Hi Jonas,
I added an initial color zone command to ChimeraX, will be in tonight’s daily build. Here’s an example, image attached.
open 5199 from emdb open 4v7q color #1 zone #2 dist 10
And a few more commands to lower the contour level, increase to full resolution (step 1), and hide the connected bits of density less than 1 nm in size:
vol #1 level .1 step 1 surf dust #1 size 10 color #1 zone #2 dist 10
This color zone doesn’t automatically recolor yet when the surface changes (e.g. new contour level). Needs some more work.
Tom
On Apr 3, 2017, at 6:53 PM, Tom Goddard wrote:
Hi Jonas,
The color zone capability is not yet in ChimeraX. I’ll see if I can add that later this week.
Tom
On Apr 3, 2017, at 6:47 PM, Jonas Barandun wrote:
Dear chimeraX users/developers
Is there an easy way to color a cryoem density map based on individual subunits (from a pdb file) - similar to the color zone functionality in chimera?
Thanks a lot
Best Jonas
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