Hi Phil,
If you start ChimeraX by clicking an icon then it puts files on your desktop. If you start it from a shell (for example on Linux) it will put the files in the directory you started in. To find the directory ChimeraX is currently in use the ChimeraX pwd command
pwd cxcmd:pwdCurrent working directory is: /Users/goddard/Desktop
To change the directory ChimeraX is currently in use the cd command
cd ~/Documents
On Oct 4, 2022, at 9:21 AM, McClean, Phillip via ChimeraX-users
wrote: Hi Everyone-
I used the following command to obtain a file with the contacts between two chains:
alphafold contacts /B to /C output contact_pae.txt I cannot seem to find where the output file is located.
Thanks for any help.
Phil McClean _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu mailto:ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users