Brilliant, thank you very much Tom ! All the best Enrico Il giorno ven 31 mag 2024 alle ore 21:27 Tom Goddard <goddard@sonic.net> ha scritto:
Hi Enrico,
open *.cif matchmaker #2-5 to #1 save [NAME] format pdb models #1-5 relModel #1
or
save alphafold_[ID].pdb format pdb models #1-5 relModel #1
Please read the documentation before asking.
https://www.cgl.ucsf.edu/chimerax/docs/user/commands/save.html#pdb
Tom
On May 31, 2024, at 8:54 AM, Enrico Martinez via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX Users !
I am dealing with the analysis of multiple structural coordinates generated by AlphaFold for a target protein in *.cif extension. My goal is superimpose all the coordinates to the first model and save them in .pdb as separate files. So my script could be:
open ./*.cif match #2-6 to #1 # probably there is a better solution # and some command for save
What could be the solution to save all the coordinates in automatic way in separate pdb with the name patterns corresponded to the ID of these models ?
Many thanks in advance
Enrico _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/