Dear Elaine I read an old post in 2010 about the surfnet tool in Chimera. Is there anything similar to surfnet tool in ChimeraX? CASTp did not find the correct pocket in out apo protein. We want to refine manually and then measure the pocket. Miao From: Elaine Meng <meng@cgl.ucsf.edu> Date: Friday, October 27, 2023 at 1:08 PM To: Zhang, Miao <zhang@chapman.edu> Cc: Tom Goddard via ChimeraX-users <chimerax-users@cgl.ucsf.edu> Subject: change label size External Message [External Message] Hi Miao, If you just want to make current labels bigger, either (A) menu: Actions... Label.. Set Label Height - or - (B) the "label" command "height" option, e.g. label height 2 (or whatever angstrom height you want). For details, see: <https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Fcommands%2Flabel.html&data=05%7C01%7Czhang%40chapman.edu%7Cdb227fbe283641aaecbe08dbd7287e44%7C809929af2d2545bf9837089eb9cfbd01%7C1%7C0%7C638340341143597152%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=QEckL4Ww%2FgF0156cqf7N%2FOJ3lWa3VXY7c%2FTBt%2FMkD%2BI%3D&reserved=0<https://rbvi.ucsf.edu/chimerax/docs/user/commands/label.html>> Or if you want to set a preference for labels created in the future, see "label defaultHeight" <https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Fcommands%2Flabel.html%23defaultHeight&data=05%7C01%7Czhang%40chapman.edu%7Cdb227fbe283641aaecbe08dbd7287e44%7C809929af2d2545bf9837089eb9cfbd01%7C1%7C0%7C638340341143597152%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=OMC1nNqy9ywqXAdyv1Kkpl6t%2BDTNzlPP1pnNI1JlnO4%3D&reserved=0<https://rbvi.ucsf.edu/chimerax/docs/user/commands/label.html#defaultHeight>> ...or, you can do the same thing with the Preferences GUI, the Labels section: <https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Fpreferences.html%23labels&data=05%7C01%7Czhang%40chapman.edu%7Cdb227fbe283641aaecbe08dbd7287e44%7C809929af2d2545bf9837089eb9cfbd01%7C1%7C0%7C638340341143597152%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=ey2EniLYdw9oSelNDM0%2Bmcf7jxJWJoe0aZcvkfs63ws%3D&reserved=0<https://rbvi.ucsf.edu/chimerax/docs/user/preferences.html#labels>> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 27, 2023, at 12:41 PM, Zhang, Miao via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
How do I change the size of label “5.6 angstrom” of distance? Miao
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