Amazing, the issue has been resolved! Many thanks to you, Elaine. Your assistance was invaluable. The command that solved the problem is: "color bfactor #1 palette 0,red:50,orange:70,yellow:90,lightblue:100,blue". ---- Replied Message ---- | From | Elaine Meng<meng@cgl.ucsf.edu> | | Date | 05/10/2024 01:07 | | To | Xiaohua Hu<minirose2021@163.com> | | Cc | chimerax-users@cgl.ucsf.edu | | Subject | Re: [chimerax-users] How can I modify the palette of alphafold? | Hi Xiaohua, You would not modify the named palettes which are built into the code (redblue, rainbow, alphafold, etc.). Instead you would use the "palette" option to directly specify whatever colors you want. How to specify colors or color/value pairs in with the "palette" option: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#palette-options> You can see the ones used in the alphafold palette and define something similar but with the differences that you want. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 9, 2024, at 9:52 AM, Xiaohua Hu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
I run command "color bfactor #1 palette alphafold", but I think the color is not so good. How can I modify or redefine the palette alphafold?