Hi Pascal,
I enhanced the ChimeraX select command so you can select the crosslinks in a length range. Then you can color the selected ones. For example,
select #1.1 minimumLength 30 color sel red
select #1.1 minimumLength 5 maximumLength 10 color sel yellow
sel #1.1 min 10 max 15 color sel blue
The minimumLength and maximumLength options will be in tonight’s ChimeraX builds (available around 5 AM Pacific time).
Tom
On Sep 1, 2018, at 2:57 AM, Pascal Albanese wrote:
Dear Support Staff,
first of all many thanks for developing Chimera!
I'm using ChimeraX to integrate CryoEM and crosslinking MS data.I think that some features might be further implemented (or maybe are already there but i don't know how to use them):
- Is it possible to load different sets of distances/crosslinks (like with different IDs)?
- is it possible to color code the distances with a cutoff (like red if >30 for instance)?
- The histogram and network is a nice feature, but it would be nice if there were some grouping based on the distances (i.e.: 1 to 5 A; 5 to 10 A, 10 to 15 A... etc), and then you can click on the column representing your distances class to select them (so you can make a subgroup, or delete them, or edit them etc...)
that's it, maybe something can be done writing the code but unfortunately it's not my job.
Thanks a lot and looking forward to hear from you,
Cheers, Pascal
-- Pascal Albanese, PhD Post-doc, Politecnico di Torino Dipartimento DISAT, BioSolar Lab@Environment Park
Via Livorno 60
10144 Torino
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