That’s really two bugs —(1) ‘dataFormat’ should accept/expect nicknames (like ‘format’ does) while allowing the full name and (2) using the full name should work. I will open a ticket with you on the recipient list so you know when they get fixed. Should be today.
—Eric
On Apr 1, 2020, at 11:29 AM, Ben Webb ben@salilab.org wrote:
On 3/24/20 2:22 PM, Eric Pettersen wrote:
I mentioned awhile back that I was working on a replacement for the Open/Save/DataFormat bundle_info tags. In the replacement scheme, this will be possible by specifying the ‘dataFormat’ keyword, /e.g./ open long-ass-url data pdb.
I see that in today's daily build this works (albeit with "open2"), great! But I can't open an alignment in the same fashion:
open2 equally-long-url data pir
complains with "Invalid "dataFormat" argument".
open2 equally-long-url data NBRF/PIR
gives a syntax error (chimerax/seqalign/parse.py tries to exec "from .io.readNBRF/PIR import read" which isn't valid Python). Is this code still in flux or should I open a bug?
Ben
ben@salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
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