
Hi Elaine, I am writing up some results. Would you please see if I am describing our method correctly? Our protein has 2 domains, one whose structure is well known and for which many PDBs are available, and another that is novel. The PDB IDs below came from your file entitled af512_template_domain_names.json "Protein structure was predicted with AlphaFold2 (Jumper* et al.*, 2021) as implemented by UCSF ChimeraX v. 1.6rc (Pettersen* et al.*, 2021) with the option to use PDB templates. In practice, this meant that the N-terminal DUF3494 domain of the protein was predicted based on several existing PDB structures (7bwy_A, 7bwx_A, 3uyu_A, 6a8k_A, 3wp9_A, 4nu3_A, 4nu3_B, 6bg8_B, 4nu2_A, 3vn3_A, 6eio_A, 4nuh_A, 7dc5_B, 5uyt_A, 5uyt_B, 5uyt_A, 5uyt_B) and the C-terminal domain was predicted de novo by AlphaFold." Is it OK? thank you Jim