I just wanted to specify that I am using the nogui mode of chimeraX for the computation. Shubham.
________________________________ From: Shubham Devesh Ramgoolam Sent: June 12, 2022 1:38 AM To: chimerax-users@cgl.ucsf.edu chimerax-users@cgl.ucsf.edu Subject: Trajectory computation slowing down overtime
Hi all,
I hope you are doing well.
I have a Python script for analyzing specific residue pairs for every frame in a trajectory.
It does so, by using 2 for loops:
For frame in list_frames:
Set current frame to frame
For pair in specific_residue_pairs:
Do computation
The computation involves defining geometric objects(centroids, axes, planes) and performing calculations with them(distance, angles).
The issue here is that as we move further in list_frames, the computation takes longer and longer. There is a somewhat linear increase in computation time, as illustrated below:
[cid:image003.png@01D87E37.C872FDF0]
Is there a way to maintain the same computation time for every frame in the trajectory?
Regards,
Shubham Ramgoolam
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