Dear All,
I am trying to visualize glycans in ChimeraX, however I cannot find the possibility to use either the 3D-SNFG, nor the filled planar representation. Am I overlooking something? Is there a possibility to do this? [image: image.png]
Thank you very much!
Best regards, Julia Varga
Dear Julia, ChimeraX does not have 3D-SNFG glycan representations currently, although it is something we would like to have in the future.
You can turn filled rings on/off with commands:
style ringFill thin style ring off
Or to limit the scope to residues that are not protein or nucleic acid, something like
style ~ (protein | nucleic) ring thick
Show the help with command "help style" or see the copy at our website here: https://rbvi.ucsf.edu/chimerax/docs/user/commands/style.html
For Chimera only (not ChimeraX), there is a 3D-SNFG plugin from the InsiliChem group in Barcelona: https://github.com/insilichem/tangram_snfg
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 26, 2022, at 5:57 AM, Varga Julia via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear All,
I am trying to visualize glycans in ChimeraX, however I cannot find the possibility to use either the 3D-SNFG, nor the filled planar representation. Am I overlooking something? Is there a possibility to do this? <image.png>
Thank you very much!
Best regards, Julia Varga
participants (2)
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Elaine Meng
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Varga Julia