Dear all,
It might be not a good question regarding chimeraX. I have a PEET generated averaged map and output of PEET is reversed vs. single particle maps. What is a good function to change the density of PEET output? I used newstack -multadd -1,0 function in imod, however it gave -137 level…
Thanks! Hong
Hi Hong,
I guess you mean you want to change the sign of the density map values. The following ChimeraX command does that
volume scale #1 factor -1
And if you wanted to save that map you could use
save mynewmap.mrc model #1
Tom
On Aug 25, 2022, at 12:59 PM, HONG ZHAN via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear all,
It might be not a good question regarding chimeraX. I have a PEET generated averaged map and output of PEET is reversed vs. single particle maps. What is a good function to change the density of PEET output? I used newstack -multadd -1,0 function in imod, however it gave -137 level…
Thanks! Hong
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Thanks Tom:D
Hong
On Aug 25, 2022, at 5:42 PM, Tom Goddard goddard@sonic.net wrote:
Hi Hong,
I guess you mean you want to change the sign of the density map values. The following ChimeraX command does that
volume scale #1 factor -1
And if you wanted to save that map you could use
save mynewmap.mrc model #1
Tom
On Aug 25, 2022, at 12:59 PM, HONG ZHAN via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear all,
It might be not a good question regarding chimeraX. I have a PEET generated averaged map and output of PEET is reversed vs. single particle maps. What is a good function to change the density of PEET output? I used newstack -multadd -1,0 function in imod, however it gave -137 level…
Thanks! Hong
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
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Tom Goddard