Interface between A and B chain in 4WW1.pdb
Hi Chimerax interfaces select<help:user/commands/interfaces.html#select> #1/A contacting #1/B [bothSides true][probeRadius 1.4][area Cutoff 3500] Expected a keyword What keyword is required? Have I supplied enough info? Kind Regards Rosy Calvert
Hi Rosy, Clicking the link in the Log will open the help page for this command, which starts with showing the typical syntax with which to run the command. In this notation, square brackets denote optional keywords, but you should not write them in your command. This is explained if you click the "Usage" link just above the command syntax. Quoting the relevant part of the "Usage" help page: "- optional keywords and parameters are referred to as options or are enclosed in square brackets: [ ] - mutually exclusive choices are separated by a vertical bar: | - mutually exclusive choices of a required item are grouped with parentheses: ( ) These brackets, vertical bars, and parentheses in Usage lines are merely symbolic and should not be included in the typed command." In brief: try writing your command without the brackets and it should work. I hope this helps! Cheers, Guillaume On 11/03/2026 19.09, Rosaleen Calvert via ChimeraX-users wrote:
Hi Chimerax *interfaces select <help:user/commands/interfaces.html#select> #1/A contacting #1/B **[bothSides true][probeRadius 1.4][area Cutoff 3500]* *Expected a keyword*
What keyword is required? Have I supplied enough info?
Kind Regards Rosy Calvert
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So your command should look like interfaces select #1/A contacting #1/B bothSides true probeRadius 1.4 area Cutoff 3500 Tom
On Mar 11, 2026, at 11:39 AM, Guillaume Gaullier via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi Rosy,
Clicking the link in the Log will open the help page for this command, which starts with showing the typical syntax with which to run the command. In this notation, square brackets denote optional keywords, but you should not write them in your command. This is explained if you click the "Usage" link just above the command syntax.
Quoting the relevant part of the "Usage" help page:
"- optional keywords and parameters are referred to as options or are enclosed in square brackets: [ ] - mutually exclusive choices are separated by a vertical bar: | - mutually exclusive choices of a required item are grouped with parentheses: ( )
These brackets, vertical bars, and parentheses in Usage lines are merely symbolic and should not be included in the typed command."
In brief: try writing your command without the brackets and it should work.
I hope this helps! Cheers,
Guillaume
On 11/03/2026 19.09, Rosaleen Calvert via ChimeraX-users wrote:
Hi Chimerax *interfaces select <help:user/commands/interfaces.html#select> #1/A contacting #1/B **[bothSides true][probeRadius 1.4][area Cutoff 3500]* *Expected a keyword*
What keyword is required? Have I supplied enough info?
Kind Regards Rosy Calvert
VARNING: Klicka inte på länkar och öppna inte bilagor om du inte känner igen avsändaren och vet att innehållet är säkert. CAUTION: Do not click on links or open attachments unless you recognise the sender and know the content is safe.
_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/
E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy
_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu <mailto:chimerax-users@cgl.ucsf.edu> To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu <mailto:chimerax-users-leave@cgl.ucsf.edu> Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (3)
-
Guillaume Gaullier -
Rosaleen Calvert -
Tom Goddard