How do i remove the ghost bonds?
open /path/to/foo.pdb hide atoms select (#1/A:15,35,52,101,129 :< 5) & protein show sel atoms cartoon suppressBackboneDisplay false and then zooming into the carboxy-term at L129 How do I hide the ghost bonds? (i.e. the bond between OXT and the end of the tube, which is not an atom, and the bond between the C atom and also the end of the tube..) Thanks
Those cones are tethers showing side chain connections to the ribbon. See this post for hiding them. https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/... Tom
On Jul 3, 2026, at 9:31 PM, Francisco via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
open /path/to/foo.pdb hide atoms select (#1/A:15,35,52,101,129 :< 5) & protein show sel atoms cartoon suppressBackboneDisplay false and then zooming into the carboxy-term at L129
How do I hide the ghost bonds? (i.e. the bond between OXT and the end of the tube, which is not an atom, and the bond between the C atom and also the end of the tube..)
Thanks <Screenshot From 2026-07-03 09-56-23.png> _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
Thanks Tom! On Sat, Jul 4, 2026 at 10:35 AM Tom Goddard <goddard@sonic.net> wrote:
Those cones are tethers showing side chain connections to the ribbon. See this post for hiding them.
https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/...
Tom
On Jul 3, 2026, at 9:31 PM, Francisco via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
open /path/to/foo.pdb hide atoms select (#1/A:15,35,52,101,129 :< 5) & protein show sel atoms cartoon suppressBackboneDisplay false and then zooming into the carboxy-term at L129
How do I hide the ghost bonds? (i.e. the bond between OXT and the end of the tube, which is not an atom, and the bond between the C atom and also the end of the tube..)
Thanks <Screenshot From 2026-07-03 09-56-23.png> _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (2)
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Francisco -
Tom Goddard