Those cones are tethers showing side chain connections to the ribbon. See this post for hiding them. https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/... Tom
On Jul 3, 2026, at 9:31 PM, Francisco via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
open /path/to/foo.pdb hide atoms select (#1/A:15,35,52,101,129 :< 5) & protein show sel atoms cartoon suppressBackboneDisplay false and then zooming into the carboxy-term at L129
How do I hide the ghost bonds? (i.e. the bond between OXT and the end of the tube, which is not an atom, and the bond between the C atom and also the end of the tube..)
Thanks <Screenshot From 2026-07-03 09-56-23.png> _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/