Hello, After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message: TypeError: 'str' object is not callable File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec() See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. If I use “info selection atom” then: info selection <help:user/commands/info.html#selection> atom Expected a keyword What am I doing wrong with? Please advice. Best, Wei
Hi Wei, I believe the traceback from “info selection” is a bug. The “atom” level is already the default, but if you wanted to specify getting atom attributes, the command would be “info selection level atom” <http://rbvi.ucsf.edu/chimerax/docs/user/commands/info.html#selection> However, it doesn’t help because the bug is still the same. Sorry about that, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 14, 2018, at 9:25 AM, Wei Wang <ww2283@columbia.edu> wrote:
Hello,
After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message:
TypeError: 'str' object is not callable
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec()
See log for complete Python traceback.
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.
If I use “info selection atom” then:
info selection atom Expected a keyword
What am I doing wrong with? Please advice.
Best,
Wei
Hi Wei, The bug is fixed now and the fix will be in tomorrow’s build. —Eric
On May 14, 2018, at 9:36 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Wei, I believe the traceback from “info selection” is a bug.
The “atom” level is already the default, but if you wanted to specify getting atom attributes, the command would be “info selection level atom”
<http://rbvi.ucsf.edu/chimerax/docs/user/commands/info.html#selection>
However, it doesn’t help because the bug is still the same. Sorry about that, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 14, 2018, at 9:25 AM, Wei Wang <ww2283@columbia.edu> wrote:
Hello,
After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message:
TypeError: 'str' object is not callable
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec()
See log for complete Python traceback.
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.
If I use “info selection atom” then:
info selection atom Expected a keyword
What am I doing wrong with? Please advice.
Best,
Wei
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participants (3)
-
Elaine Meng -
Eric Pettersen -
Wei Wang