Hello,
After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message:
TypeError: 'str' object is not callable
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec()
See log for complete Python traceback.
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.
If I use “info selection atom” then:
info selection help:user/commands/info.html#selection atom Expected a keyword
What am I doing wrong with? Please advice.
Best,
Wei
Hi Wei, I believe the traceback from “info selection” is a bug.
The “atom” level is already the default, but if you wanted to specify getting atom attributes, the command would be “info selection level atom”
http://rbvi.ucsf.edu/chimerax/docs/user/commands/info.html#selection
However, it doesn’t help because the bug is still the same. Sorry about that, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 14, 2018, at 9:25 AM, Wei Wang ww2283@columbia.edu wrote:
Hello,
After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message:
TypeError: 'str' object is not callable
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec()
See log for complete Python traceback.
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.
If I use “info selection atom” then:
info selection atom Expected a keyword
What am I doing wrong with? Please advice.
Best,
Wei
Hi Wei, The bug is fixed now and the fix will be in tomorrow’s build.
—Eric
On May 14, 2018, at 9:36 AM, Elaine Meng meng@cgl.ucsf.edu wrote:
Hi Wei, I believe the traceback from “info selection” is a bug.
The “atom” level is already the default, but if you wanted to specify getting atom attributes, the command would be “info selection level atom”
http://rbvi.ucsf.edu/chimerax/docs/user/commands/info.html#selection
However, it doesn’t help because the bug is still the same. Sorry about that, Elaine
Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 14, 2018, at 9:25 AM, Wei Wang ww2283@columbia.edu wrote:
Hello,
After using ctrl-left click to select an atom, I use “info selection” as instructed in the manual. However I received the following error message:
TypeError: 'str' object is not callable
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/list_info/util.py", line 50, in spec return o.atomspec()
See log for complete Python traceback.
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.
If I use “info selection atom” then:
info selection atom Expected a keyword
What am I doing wrong with? Please advice.
Best,
Wei
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participants (3)
-
Elaine Meng -
Eric Pettersen -
Wei Wang