Dear Chimera X users, Is it possible to show the fit of each nucleotide (not amino acid residue) in density using the resfit command or something like that? Thanks
Hi Mary, The resfit command only works on amino acid sequences. You can look at the density around specific residues using the Zone mouse mode in the "Right Mouse" toolbar. You click on residues with right mouse button (or Command-click on Mac) and it shows just the residues and density nearby and labels the residues. Here's an example open 7tzt open 7tzt from eds ui mousemode right zone # Command-click on and atom of residue 89 Clicking on an atom and dragging up or down makes the zone shown around that residue larger or smaller. Tom
On Sep 22, 2022, at 7:54 PM, Mary Liu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera X users,
Is it possible to show the fit of each nucleotide (not amino acid residue) in density using the resfit command or something like that?
Thanks _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Thank you for the example! Mary On Mon, Sep 26, 2022 at 10:28 AM Tom Goddard <goddard@sonic.net> wrote:
Hi Mary,
The resfit command only works on amino acid sequences. You can look at the density around specific residues using the Zone mouse mode in the "Right Mouse" toolbar. You click on residues with right mouse button (or Command-click on Mac) and it shows just the residues and density nearby and labels the residues. Here's an example
open 7tzt open 7tzt from eds ui mousemode right zone # Command-click on and atom of residue 89
Clicking on an atom and dragging up or down makes the zone shown around that residue larger or smaller.
Tom
On Sep 22, 2022, at 7:54 PM, Mary Liu via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera X users,
Is it possible to show the fit of each nucleotide (not amino acid residue) in density using the resfit command or something like that?
Thanks _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (2)
-
Mary Liu -
Tom Goddard