February 2003 - Chimera-dev - RBVI Mailing Lists

registering new file types for chimera
by Greg Couch 28 Feb '03

28 Feb '03

I've added an optional extra argument to chimera.fileInfo.register() that is a list of mime types that correspond to the file type. Feel free to modify your extensions to supply the extra information :-) This will eventually be used by web browsers to invoke chimera. Greg

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Profec
by Michael Trieb 18 Feb '03

18 Feb '03

Dear Chimera developers We have a question concerning the possibility to read files from PROFEC (wich is implemented in Amber 7). We know that this is possible with Midas Plus. We would like to know if this is also possible with Chimera. Thanks in advance Michael Trieb -- Mag. Michael Trieb Universität Innsbruck Institut für Allgemeine, Anorganische und Theoretische Chemie Innrain 52a A-6020 Innsbruck e-mail: michael.trieb(a)uibk.ac.at Tel.: +43(0)512/507-5142

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Re: [chimera-dev] Re: DelPhi in Chimera
by Elaine Meng 16 Feb '03

16 Feb '03

I just wanted to add that if you set the Delphi calculation parameters to also create a Grasp surface, and then use the Grasp surface for display in DelphiViewer, the neutral parts are opaque white. This is true at least in version 1602 and a few preceding versions. In the next release, you can control the color and opacity levels for positive, neutral, and negative potentials explicitly. Elaine =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Elaine C. Meng, Ph.D. Babbitt Lab and Computer Graphics Lab meng(a)cgl.ucsf.edu http://www.cgl.ucsf.edu/home/meng/index.html =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

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Re: DelPhi in Chimera
by Thomas Goddard 14 Feb '03

14 Feb '03

Hi Wade DelphiViewer shows positive potentials above the cutoff as blue, negative potentials beyond the cutoff as red, and intermediate values as whi

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ordering in file browser
by Eric Pettersen 13 Feb '03

13 Feb '03

David sent me a mail saying he would prefer the Chimera file browsing widget to separate directories from files in each column, directories first. I am fine with adding this behavior. The question is whether I should allow both the old and new behavior via a preference? I guess I'm polling to see who would prefer the separate files/directories vs. the current purely-alphabetical sorting. Then I can decide whether to keep both behaviors and if I do, which one should be the default. Thanks for your participation! --Eric

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Benchmark correction
by Rey Banatao 09 Feb '03

09 Feb '03

OOPs.... that should read 1GHz not 1MHz processor :) Hey guys- Didn't see specs for the new powerbooks up.... so here ya go. Machine info: Apple Powerbook G4, 1Mhz, 1GB SDRAM, ATI Mobility Radeon 9000 64MB DDR SDRAM running OS X 10.2.3, using Apple's X11 beta (XFree86 4.2.1) Chimera beta Build 1602 Results: surface: 98 mesh: 98 contour: 53 solid: 227 recolor:64

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benchmark
by Rey Banatao 09 Feb '03

09 Feb '03

Hey guys- Didn't see specs for the new powerbooks up.... so here ya go. Machine info: Apple Powerbook G4, 1Mhz, 1GB SDRAM, ATI Mobility Radeon 9000 64MB DDR SDRAM running OS X 10.2.3, using Apple's X11 beta (XFree86 4.2.1) Chimera beta Build 1602 Results: surface: 98 mesh: 98 contour: 53 solid: 227 recolor:64

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Chimera-dev February 2003