Hi,
I am trying to open the same pdb file twice and apply mm command on the
chains.
The following script loops through the files in the folder so i open the
same pdb twice:
#!/bin/bash
for file in `ls tmp_d2`
do
chimera --nogui --silent tmp_d2/$file tmp_d2/$file tmp_d2/$file
tmp_d2/$file chim.cmd > test_A.pdb
mv test_A.pdb temper/$file
echo "$file"
done
File "chim.cmd" has the following:
mm #0:.A:.B #1:.B:.A pair ss
measure rotation #0 #1
I get the following error:
1c9o_1.pdb
Error while sourcing chim.cmd, line 1:
"measure rotation #0 #1"
Rotation angle is near zero (0 degrees)
I should be getting an angle of 180 degrees because they are all dimers. I
have two versions of chimera on my system 1.7 and 1.11.2, does that make a
difference?
Thank you.
Regards,
Kavya Shankar
