May 2017 - Chimera-dev - RBVI Mailing Lists

Open MD Movie Trajectorie from plugin
by Pablo Solar Rodríguez 15 May '17

15 May '17

Hello all! It is possible to open the MD Movie trajectory with a custom format and a file from a plugin? I am trying to do this: *from Movie.gui import MovieDialogfrom Trajectory import EnsembleLoaderEnsembleLoader.loadEnsemble(MovieDialog, movieFile="/Users/ME/Desktop/movie.pdb")* **But I get this error *ValueError: Unknown trajectory format: 'MODEL 0'* * File "/Applications/Chimera.app/Contents/Resources/share/Trajectory/EnsembleLoader.py", line 131, in loadEnsemble* * raise ValueError("Unknown trajectory format: '%s'" % format)* *See reply log for Python traceback.* I think it is because I need to set the format (self.curFormat in the EnsembleLoader class) but it is not possible. How can I solve this? Thank you so much -- *Pablo Solar Rodríguez* *pablosolar.r(a)gmail.com <pablosolar.r(a)gmail.com>*

2 2

Save PDB and Map before fitting
by Pablo Solar Rodríguez 14 May '17

14 May '17

Hi all, Hope everything is going fine! In my plugin, it is necessary to save the PDB and the map (ccp4) to disk before the exhaustive fitting process is executed. Is there any simple and efficient way of doing this? I've checked the scripts and haven't found anything about this and I wouldn't like to have to replicate the code from the Chimera source (OpenSave and the relative to maps). This question is quite related to the previous one I made about copying a molecule. Thank you all in advance and kind regards from Spain.

5 15

Get values from other chimera dialogs
by Pablo Solar Rodríguez 08 May '17

08 May '17

Hello everyone! I feel you will get tired of me asking so many questions hehe Anyway, I continue developing my plugin and I'd like to know if there's any way to get values from other chimera dialogs although they are not open. For example, when my map is loaded I need the values, from the Volume Viewer, of the voxel size (in Coordinates panel) and the cutoff, but I didn't find how to get them and I really don't know if this is possible or not. Thank you in advance and, as usual, kind regards! Pablo.

3 2