Dear Tom,
Thank for the add, it works and is very useful. However, I don't know if I might haven't explained well: I have a complex set of pseudobonds (let's say #2) involving several Chains of #1. In the "crosslinks network" feature I'm able to subselect chains, but not subgroups of pseudobonds involving, for instance, chains A and B (can be either clicking on the network or with the command line). Would be possible to add this?
Thanks! Pascal
Il giorno mer 6 mar 2019 alle ore 21:37 Pascal Albanese < pascal.albanese@polito.it> ha scritto:
This is great! Thanks,
I’ll try tomorrow and give u some feedback.
P
Il giorno mer 6 mar 2019 alle 21:33 Tom Goddard goddard@sonic.net ha scritto:
Hi Pascal,
I added the ability to save pseudobond files (.pb suffix) in ChimeraX, will be in tonight's builds,
select /A,B min 15 max 24 save somelinks.pb selectedOnly true
This saves crosslinks between chains A and B with lengths between 15 and 24. The link colors and radii are also saved.
Tom
On Mar 6, 2019, at 2:33 AM, Pascal Albanese wrote:
Dear ChimearX Users and developers,
I'm using ChimeraX for visualization and analysis of pseudobonds datasets from Crosslinking-MS and i found new features very useful (min max selection etc). I think it would be useful (but i don't know how much effort will be required) to be able to select subsets of distances (e.g. form 15 to 24 Angstroms, or involving chain A and B) and being able to create and export these subsets. for instance i have a Complex of A, B and C and i want to select all pseudo-bonds involving A and B and export them as pb file (to be able to load them as a separate model lateron). Or to sel min 15 max 24, and then export them as pb file (with "save" function).
I think it would be really useful for both crosslinks visualization and analysis (i work with datasets of thousands of crosslinks on big complexes which make difficult to subselect them, i have to do it with pymol, then generate subsets and reformat them as .pb files).
i had a look to previous threads, but i didn't found similar topics. If i'm wrong my apologize.
Thank you!
Pascal
-- Pascal Albanese, PhD *Post-doc*, Politecnico di Torino Dipartimento DISAT,
BioSolar Lab@Environment Park
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--
Pascal Albanese, PhD
*Post-doc*, Politecnico di Torino
Dipartimento DISAT,
BioSolar Lab@Environment Park
Via Livorno 60
10144 Torino
e-mail: pascal.albanese@polito.it
Phone number: +39 011 2257655 <+39%20011%20225%207655>