Chimera-users May 2013

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chimera-users@cgl.ucsf.edu

30 participants
33 discussions

Question about measuring volume in chimera
by Varun Kumar 07 May '13

07 May '13

Hi, Can we outline a particular area and measure volume in chimera? I wish to measure specifically the purine binding site in the ATP binding pocket of Protein kinase C. Best regards -- Varun Kumar International Graduate Student School of Biomedical Sciences Department of Biological Sciences Kent State University, Kent, Ohio, U.S

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RMSD
by George Tzotzos 04 May '13

04 May '13

Hi everybody, I am trying to measure the RMSD between a docked ligand and the corresponding ligand in an X-ray structure. I've been looking to find a way of doing this in Chimera to no avail. I'd be grateful for any suggestions on how to do this. Best regards George

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save map with the adjusted threshold
by Moumita Dutta 01 May '13

01 May '13

Hello, I'm not sure if I can do this in chimera. Once I open a density map and adjust the threshold and removed dust how can I save the map in this setting so that next time when I open it I don't have to adjust again. Thanks

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