Chimera-users

chimera-users@cgl.ucsf.edu

  • 5 participants
  • 6983 discussions

01 Jun '10
Vector artwork
by Mallela, Krishna 01 Jun '10

01 Jun '10
attributes
by sette@uniroma2.it 28 May '10

28 May '10

27 May '10
a simple question
by Amitoj Chopra 27 May '10

27 May '10
locking docking
by Alex Perálvarez Marín 27 May '10

27 May '10
creating virus capsid
by Elaine Meng 27 May '10

27 May '10

26 May '10
problems reading .rec file
by Shawkey,Matthew D 25 May '10

25 May '10
measure rotation rod
by le monk 25 May '10

25 May '10
prmtop
by richardbonnet 24 May '10

24 May '10
Amino acid substitution with Chimera
by Hayeon Kwak 19 May '10

19 May '10

19 May '10
weighted distance
by Bala subramanian 19 May '10

19 May '10
Re: [Chimera-users] Grouping models
by Thomas Goddard 19 May '10

19 May '10
Saving BRIX volume file, missing data
by Thomas Goddard 18 May '10

18 May '10

18 May '10
accessing atom information
by Bala subramanian 17 May '10

17 May '10
clip planes in vrml
by Daniel Gurnon 17 May '10

17 May '10
Re: [Chimera-users] Creating movies
by Tom Goddard 15 May '10

15 May '10
Creating movies
by Matthew Skeels 15 May '10

15 May '10
Energy Minimization
by Eric Pettersen 13 May '10

13 May '10
Solvate RNA-protein Complex
by Andrew Tran 12 May '10

12 May '10
error
by zxd 11 May '10

11 May '10
Chimera failed abnormally
by emirate14 10 May '10

10 May '10
ksdssp assignments
by Tom Duncan 10 May '10

10 May '10
output data from findclash
by Kim, Sunghoon 10 May '10

10 May '10

10 May '10
Volume covered by a group of atoms
by Miguel Ortiz Lombardia 10 May '10

10 May '10
Ensemble Cluster via command line
by Jan H. Löhr 10 May '10

10 May '10
presets, python and printing
by Daniel Gurnon 10 May '10

10 May '10
Fwd: presets, python and printing
by Yang, Zheng (YZ) 10 May '10

10 May '10
superimposed 3D structure
by deeba noreen 08 May '10

08 May '10
ligand comformation clustering
by Maurice Ho 06 May '10

06 May '10

05 May '10
Sequential stereo
by Daniel Hitchcock 05 May '10

05 May '10
Adjust torsion and bump checking
by Kim, Sunghoon 04 May '10

04 May '10
place fragment (again)
by Elisabeth Ortega 04 May '10

04 May '10
about centroid
by Francesco Pietra 03 May '10

03 May '10
rmsd between two ligands
by Miriam Gochin 01 May '10

01 May '10
Volume Subtractions
by Murali Ayaluru 30 Apr '10

30 Apr '10
(no subject)
by Hanzhong Liu 28 Apr '10

28 Apr '10
DCD format error 1
by Lilian OLIVIERI 28 Apr '10

28 Apr '10
volume threshold
by Alex Perálvarez Marín 27 Apr '10

27 Apr '10

27 Apr '10
help with simple python script
by Scott Classen 27 Apr '10

27 Apr '10
ChemGroups
by Mauro Truglio 27 Apr '10

27 Apr '10
Daily Builds
by Jon N. Rumbley 27 Apr '10

27 Apr '10
saving attribute to file
by Scott Classen 26 Apr '10

26 Apr '10
POV-Ray setting for movie making
by Paul Brandt 26 Apr '10

26 Apr '10
please stop these emails
by Dr. Ahmed Sofy 26 Apr '10

26 Apr '10
7 10
0 0
placeFragment
by Elisabeth Ortega 26 Apr '10

26 Apr '10

24 Apr '10
transform coordinates
by Alex Perálvarez Marín 23 Apr '10

23 Apr '10
Displacement through vectors
by Elisabeth Ortega 23 Apr '10

23 Apr '10
level of detail (vrml)
by Damien Larivière 22 Apr '10

22 Apr '10
Small molecule dimensions
by le monk 21 Apr '10

21 Apr '10
hide dust
by weimin wu 20 Apr '10

20 Apr '10
Chimera on Acer Aspire 1410
by Mario J. Borgnia 20 Apr '10

20 Apr '10
Chimera and Nvidia 3D vision
by Joern Lenz 20 Apr '10

20 Apr '10
Save session for movie
by Francesco Pietra 18 Apr '10

18 Apr '10

17 Apr '10
Space Navigator on Linux
by Daniel Luque 15 Apr '10

15 Apr '10
why is Chimera so slow?
by Scott Classen 14 Apr '10

14 Apr '10

14 Apr '10
Fwd: Re: install
by Greg Couch 13 Apr '10

13 Apr '10
xfowarding not working in new chimera
by Kenneth Frankel 13 Apr '10

13 Apr '10

13 Apr '10
Analysis of dihedral angles
by eduardo.troche@uvigo.es 13 Apr '10

13 Apr '10
surface holes
by Eric Pettersen 12 Apr '10

12 Apr '10
question about ViewDock
by Miriam Gochin 12 Apr '10

12 Apr '10
install
by Jay Brown 12 Apr '10

12 Apr '10

10 Apr '10
[Re: Residue exposition cutoff]
by Yasser Almeida Hernández 07 Apr '10

07 Apr '10
amino acid clashes
by Kirys, Tatsiana 06 Apr '10

06 Apr '10

05 Apr '10
Residue exposition cutoff
by Yasser Almeida Hernández 05 Apr '10

05 Apr '10
Possible bug in Chimera RMSD calculation
by Yasser Almeida Hernández 03 Apr '10

03 Apr '10
Coloring model represented as PipesAndPlanks
by Ibrahim Moustafa 01 Apr '10

01 Apr '10
Daily build requirements
by sherden@caltech.edu 31 Mar '10

31 Mar '10
Problem in Surface depiction
by Kshatresh Dutta Dubey 31 Mar '10

31 Mar '10
Re: [Chimera-users] named selections
by Elaine Meng 30 Mar '10

30 Mar '10

30 Mar '10
Trouble with thermal ellipsoids
by sherden@caltech.edu 30 Mar '10

30 Mar '10
RMSD
by Beale, John 29 Mar '10

29 Mar '10
zones and residue name/number
by Francesco Pietra 29 Mar '10

29 Mar '10

29 Mar '10

26 Mar '10

24 Mar '10

23 Mar '10
3 15
0 0
question concerning volumetric data
by Eric Pettersen 22 Mar '10

22 Mar '10

17 Mar '10
Step size in MD Movie
by Francesco Pietra 16 Mar '10

16 Mar '10
Volume surface colors
by Will Moore 15 Mar '10

15 Mar '10

12 Mar '10

12 Mar '10
Recording trajectory
by Francesco Pietra 11 Mar '10

11 Mar '10
Re: [Chimera-users] Recording trajectory
by Eric Pettersen 09 Mar '10

09 Mar '10
Problem with energy minimization
by Bill McIntire 05 Mar '10

05 Mar '10
cap color from command line
by Jean-Paul Armache 05 Mar '10

05 Mar '10

04 Mar '10
positive and negative overlaps
by Kshatresh Dutta Dubey 03 Mar '10

03 Mar '10
show axis ?
by Stefan Bäckström 03 Mar '10

03 Mar '10
groups
by Jean-Paul Armache 03 Mar '10

03 Mar '10
chimera-users@cgl.ucsf.edu
by Jozef Lewandowski 03 Mar '10

03 Mar '10
Sum of distances
by Jozef Lewandowski 03 Mar '10

03 Mar '10
constraints and restraints
by Elaine Meng 02 Mar '10

02 Mar '10
NAMD trajectory and AMBER topology
by Francesco Musiani 02 Mar '10

02 Mar '10

02 Mar '10
multi-threading
by Jean-Paul Armache 02 Mar '10

02 Mar '10

01 Mar '10
saving moved maps
by Erika Mancini 26 Feb '10

26 Feb '10
question
by Huang, Xinlei 25 Feb '10

25 Feb '10
variable surface visualization
by Zambonelli, Carlo 25 Feb '10

25 Feb '10
quesitons
by Xinlei Huang 25 Feb '10

25 Feb '10
version 1.3
by n.prahl@freenet.de 24 Feb '10

24 Feb '10
Chemical groups
by Mauro Truglio 23 Feb '10

23 Feb '10
Rendering a vector/axis
by Richard Stanton 23 Feb '10

23 Feb '10
Chemical groups
by Mauro Truglio 23 Feb '10

23 Feb '10
Defining planes & Thermal ellipsoids
by David Chenoweth 22 Feb '10

22 Feb '10
How are chains paired in morphing?
by Thomas Goddard 22 Feb '10

22 Feb '10
Which Mac daily build to use
by Thomas Goddard 21 Feb '10

21 Feb '10
centroid measurements typo
by David Chenoweth 20 Feb '10

20 Feb '10
Centroid measurements
by David Chenoweth 20 Feb '10

20 Feb '10
command line writing PDB files
by Matthew Dougherty 19 Feb '10

19 Feb '10
distance measurements
by Bala subramanian 19 Feb '10

19 Feb '10
Density map in Chimera
by Pancera, Marie (NIH/VRC) [C] 17 Feb '10

17 Feb '10
copyright permission
by M P Williamson 17 Feb '10

17 Feb '10
help
by Giuseppe Falini 17 Feb '10

17 Feb '10

16 Feb '10
Re: [Chimera-users] Hydrogen Atoms
by Elaine Meng 16 Feb '10

16 Feb '10
reference for saving pdb
by Samuel Coulbourn Flores 12 Feb '10

12 Feb '10

12 Feb '10
Shadows
by David Bhella 12 Feb '10

12 Feb '10
session writing
by Jean-Paul Armache 11 Feb '10

11 Feb '10
Peptide Builder in 1.4x
by nettles 10 Feb '10

10 Feb '10
measure crossing angles for axes
by Tom Duncan 09 Feb '10

09 Feb '10
BCC CHARGES
by emrys.fslife.co.uk 08 Feb '10

08 Feb '10
Chimera/VMD visualization difference
by Keith Battle 08 Feb '10

08 Feb '10
Align the molecule
by snoze pa 08 Feb '10

08 Feb '10
display comsia contour maps
by Joern Lenz 08 Feb '10

08 Feb '10
Aligning planes with principal planes
by Dipl.-Ing. Thomas Mitterfellner 05 Feb '10

05 Feb '10
SDF partial charges
by Elaine Meng 04 Feb '10

04 Feb '10
Calculating sigma level for EM map
by Thomas Goddard 04 Feb '10

04 Feb '10
Smooth Surface
by sudheer molugu 03 Feb '10

03 Feb '10

02 Feb '10
alter volume data with python
by Michael Zimmermann 02 Feb '10

02 Feb '10
SDF Partial Charges
by Nancy 01 Feb '10

01 Feb '10

01 Feb '10
Re: [Chimera-users] holle,sir!
by Elaine Meng 30 Jan '10

30 Jan '10
H Bonds in MD simulation
by snoze pa 29 Jan '10

29 Jan '10
3 11
0 0

27 Jan '10
lighting in Chimera
by Dan Gurnon 27 Jan '10

27 Jan '10
running command scripts
by Michael Zimmermann 27 Jan '10

27 Jan '10
Rename atoms...
by Yasser Almeida Hernández 25 Jan '10

25 Jan '10
Fitting a structure to a DAMMIN/SAXS model/volume
by Byrd, Robert A. (NIH/NCI) [E] 25 Jan '10

25 Jan '10

25 Jan '10
Failed surface calculation
by Ibrahim Moustafa 23 Jan '10

23 Jan '10

22 Jan '10
Massive superposing...
by Yasser Almeida Hernández 22 Jan '10

22 Jan '10
Measuring Distances in Chimera
by Beale, John 21 Jan '10

21 Jan '10

17 Jan '10
adding hydrogens and charges
by Elaine Meng 17 Jan '10

17 Jan '10

15 Jan '10
importing colored VRML file into cinema 4d
by odonnell@chem.fsu.edu 14 Jan '10

14 Jan '10
Looping with Chimera commands
by Yasser Almeida Hernández 12 Jan '10

12 Jan '10
movie
by Alex Perálvarez Marín 12 Jan '10

12 Jan '10
problem to download chimera
by Gabriele Gucciardo 12 Jan '10

12 Jan '10
showing conservation
by Elaine Meng 07 Jan '10

07 Jan '10
Permission to use image in educational textbook
by Carolyn Arcabascio 07 Jan '10

07 Jan '10
Sphere radius
by Yasser Almeida Hernández 07 Jan '10

07 Jan '10
Re: [Chimera-users] adding hydrogens
by Eric Pettersen 06 Jan '10

06 Jan '10
use of Chimera in a paper
by Lubka roumenina 06 Jan '10

06 Jan '10
matchmaker
by Damien Larivière 06 Jan '10

06 Jan '10

04 Jan '10
Re: [Chimera-users] Residue Labeling
by Elaine Meng 04 Jan '10

04 Jan '10
Docking a ligand
by SRIRAM SATAGOPAN 04 Jan '10

04 Jan '10
selecting by radius
by Elaine Meng 04 Jan '10

04 Jan '10
matching peptides with altenate locations
by Sumitro Harjanto 31 Dec '09

31 Dec '09
distance measurement
by Farhana F Syed 30 Dec '09

30 Dec '09

29 Dec '09
hello !every one!
by gytjyb 27 Dec '09

27 Dec '09
hello!every one!
by gytjyb 27 Dec '09

27 Dec '09
perframe script
by Bala subramanian 23 Dec '09

23 Dec '09
Grouping models
by Tom Goddard 23 Dec '09

23 Dec '09
Grouping of bonds/atoms
by Dipl.-Ing. Thomas Mitterfellner 23 Dec '09

23 Dec '09