Chimera-users

chimera-users@cgl.ucsf.edu

  • 5 participants
  • 6983 discussions
H bonds
by Randy Heiland 27 May '08

27 May '08
povray problem
by Fabian Gmail 27 May '08

27 May '08
Replacing lysine with alanine
by Tom Goddard 23 May '08

23 May '08
map 3d pdf
by Tom Goddard 23 May '08

23 May '08
rotate a helix
by Maurice Ho 23 May '08

23 May '08
displacing atoms following a given vector
by Jean-Didier Maréchal 22 May '08

22 May '08

22 May '08

22 May '08
Stereo projection
by Magali Cottevieille 21 May '08

21 May '08
Stereo projection
by Steven Ludtke 21 May '08

21 May '08

21 May '08

20 May '08
saving multiple maps
by odonnell@chem.fsu.edu 19 May '08

19 May '08
building linker peptide
by Fabian Gmail 18 May '08

18 May '08
Action focus
by Thomas Goddard 15 May '08

15 May '08
electrostatic potential colored surfaces script
by Miguel Ortiz-Lombardía 15 May '08

15 May '08
Help needed
by Bagchi, Angshuman 13 May '08

13 May '08
Drawing a circle or square
by Elaine Meng 12 May '08

12 May '08
measure volume area request
by Tom Goddard 12 May '08

12 May '08
Encoding movie by hand
by Tom Goddard 12 May '08

12 May '08
Program won't open
by Abigail Lambert 12 May '08

12 May '08
Renaming chains in a PDB file with two chains
by Harinathachari Bahudhanapati 10 May '08

10 May '08
Dashed H-bond
by Ibrahim Moustafa 09 May '08

09 May '08
Number of voxels?
by Kolodziej, Steven J 09 May '08

09 May '08
saving a stereo image
by Elaine Meng 09 May '08

09 May '08

08 May '08
MemoryError restoring session
by Eric Pettersen 07 May '08

07 May '08
how to use hbonds spec
by Miguel Ortiz-Lombardía 07 May '08

07 May '08
Tile structure request
by Eduardo Sanz-Garcia 06 May '08

06 May '08
solvent-accessible surface area
by Elaine Meng 06 May '08

06 May '08
movie trajectory
by Jean-Paul Armache 05 May '08

05 May '08
movie trajectory
by Jean-Paul Armache 05 May '08

05 May '08

05 May '08
Consistency of surface color
by Bui Khanh Huy 05 May '08

05 May '08
transparent surfaces
by Charles Midgett 05 May '08

05 May '08
areaSAS_areaSES
by De Nicola, Gian 05 May '08

05 May '08
surfaces, electrostatic coloring
by Elaine Meng 03 May '08

03 May '08
Sec structure loss
by James Fethiere 02 May '08

02 May '08
automated rebuilding of side chains?
by Ian Yarbrough 02 May '08

02 May '08
adding metal ions
by Carlo Zambonelli 01 May '08

01 May '08
adding metal ions
by Carlo Zambonelli 01 May '08

01 May '08
Moving an ensemble of molecules together
by Thomas Goddard 01 May '08

01 May '08

30 Apr '08
Initial window size
by Bernard Heymann 30 Apr '08

30 Apr '08
Calling Chimera from another program
by Tom Goddard 29 Apr '08

29 Apr '08
crystal contacts to show molecules
by Miguel Ortiz-Lombardía 28 Apr '08

28 Apr '08
post-processing of Chimera images
by Jonathan Hilmer 28 Apr '08

28 Apr '08
Numbering the amino acid sequence
by Francesco Pietra 28 Apr '08

28 Apr '08

28 Apr '08
Independent model rotation
by Eduardo Sanz Garcia 26 Apr '08

26 Apr '08
questions on find hbond, find clashes/contact
by Harinathachari Bahudhanapati 25 Apr '08

25 Apr '08
correlation plot
by bala 25 Apr '08

25 Apr '08
PDF Chimera documentation
by Elaine Meng 25 Apr '08

25 Apr '08
Benchmark scores
by Sacha De Carlo 25 Apr '08

25 Apr '08
Tile 3D EM maps
by Eduardo Sanz-Garcia 24 Apr '08

24 Apr '08
Morph surfaces
by Thomas Goddard 24 Apr '08

24 Apr '08
chimera on OS X 10.5
by Mark Moll 23 Apr '08

23 Apr '08
Dialog w/ sliders?
by Randy Heiland 21 Apr '08

21 Apr '08
CHIMERA script for CONSURF
by Fabian Gmail 20 Apr '08

20 Apr '08
Command line change active to show models
by Jean-Didier Maréchal 18 Apr '08

18 Apr '08
showing buried pocket
by Eric Pettersen 18 Apr '08

18 Apr '08

17 Apr '08

15 Apr '08
Bouding box dimensions
by Damien Larivière 14 Apr '08

14 Apr '08

11 Apr '08
Drawing H-bond
by Ibrahim Moustafa 11 Apr '08

11 Apr '08
Re: [Chimera-users] Drawing H-bond
by Conrad Huang 10 Apr '08

10 Apr '08
possible Chimera bug?
by Sorani, Marco 09 Apr '08

09 Apr '08

08 Apr '08

08 Apr '08
Chimera with 3d (6-axis) mouse?
by Lee Parsons 08 Apr '08

08 Apr '08
problem with opening pdb-files
by Ackermann, Bianca 08 Apr '08

08 Apr '08
essential dynamics
by bala 07 Apr '08

07 Apr '08
about problems with windows version
by Ricardo José Soares Torquato 07 Apr '08

07 Apr '08
Fitting multiple pdb models
by Pabhashi Fernando 07 Apr '08

07 Apr '08
Map image script
by Tom Goddard 07 Apr '08

07 Apr '08
pov-ray problem
by Fabian Gmail 07 Apr '08

07 Apr '08
Chimera - Surface Residue Identification
by Thiruvarangan Ramaraj 07 Apr '08

07 Apr '08
chimera explodes
by liane saiz 05 Apr '08

05 Apr '08
Chimera crashes
by Ben Keshet 04 Apr '08

04 Apr '08
surface color command
by Michael DiMattia 04 Apr '08

04 Apr '08

03 Apr '08
chimera manual
by bala 03 Apr '08

03 Apr '08

02 Apr '08
Smooth Trajectory in MD Movie Tool
by Yan Liang 02 Apr '08

02 Apr '08
chimera
by somnath Dutta 02 Apr '08

02 Apr '08
chimera segmentation fault
by Selami ERCAN 01 Apr '08

01 Apr '08
Eliminate density with small volume
by Bui Khanh Huy 01 Apr '08

01 Apr '08

01 Apr '08
list of atoms attributes
by Jean-Didier Maréchal 01 Apr '08

01 Apr '08
vdw define
by Marta Rossini 01 Apr '08

01 Apr '08

31 Mar '08
trajectory analysis
by bala 31 Mar '08

31 Mar '08
selecting one water molecule
by hjoseph@brandeis.edu 31 Mar '08

31 Mar '08
origin of volume data
by Greg Pintilie 27 Mar '08

27 Mar '08
Collaboratory tool removed ?
by Aurelien Grosdidier 27 Mar '08

27 Mar '08
Chimera
by Robert Hilton 27 Mar '08

27 Mar '08
copy cmd in nogui script
by Nick Horelik 26 Mar '08

26 Mar '08

26 Mar '08
Chimera_v1.2470
by Brittney L. Gurda 26 Mar '08

26 Mar '08
pdb to density map function
by Jeff Triffo 25 Mar '08

25 Mar '08

24 Mar '08
Principal axis of inertia
by Jean-Didier Maréchal 21 Mar '08

21 Mar '08
BILD object question
by William Jeffrey Triffo 21 Mar '08

21 Mar '08
turning off PipesAndPlanks or Axes
by Boaz Shaanan 21 Mar '08

21 Mar '08
source headers, release
by Randy Heiland 20 Mar '08

20 Mar '08
problem with 17/03 build linux 64
by Jean-Didier Maréchal 19 Mar '08

19 Mar '08
Un-tile
by Jim Nettles 19 Mar '08

19 Mar '08
Data of Slice display
by Jason 19 Mar '08

19 Mar '08
Average slab thickness
by Tom Goddard 19 Mar '08

19 Mar '08
Requesting to solve my poblem
by Bharat Yadav 19 Mar '08

19 Mar '08
interface residues
by Francesco Malatesta 17 Mar '08

17 Mar '08

17 Mar '08
segmentation fault - surface rendering
by Michael DiMattia 13 Mar '08

13 Mar '08

11 Mar '08
pdb format and charges
by Terry Lang 06 Mar '08

06 Mar '08
one question about slicing
by Martin 06 Mar '08

06 Mar '08

05 Mar '08

05 Mar '08
Graphics cards for Mac
by Tom Goddard 04 Mar '08

04 Mar '08
scens/movies rendered with povray
by Klaas Decanniere 03 Mar '08

03 Mar '08
saving positions
by William Jeffrey Triffo 03 Mar '08

03 Mar '08

03 Mar '08
surface "holes"
by Fabian Gmail 29 Feb '08

29 Feb '08
longer bonds in image
by bala 28 Feb '08

28 Feb '08

28 Feb '08

28 Feb '08
distance in log
by 吴超 28 Feb '08

28 Feb '08

27 Feb '08
POV-Ray Export
by Greg Williams 27 Feb '08

27 Feb '08
command line mode
by snoze pa 26 Feb '08

26 Feb '08
Making an omnimax POVray movie
by Kristina Furse 26 Feb '08

26 Feb '08
[chimera-users] --nogui
by 吴超 25 Feb '08

25 Feb '08

25 Feb '08
save manipulated electron density maps in spider
by Jan-Christian Schuette 25 Feb '08

25 Feb '08
Re: [Chimera-users] distance
by Elaine Meng 22 Feb '08

22 Feb '08
Driving matchAtoms from the IDLE
by Jean-Didier Maréchal 22 Feb '08

22 Feb '08
placing a helium atom at a given position.
by Jean-Didier Maréchal 22 Feb '08

22 Feb '08
managing bond order
by Victor Kenyon 21 Feb '08

21 Feb '08
distance
by 吴超 21 Feb '08

21 Feb '08
modifying presets
by glenn millhauser 20 Feb '08

20 Feb '08

20 Feb '08

19 Feb '08
menssage error
by DRT/BA - Elias Silva dos Santos 19 Feb '08

19 Feb '08
Mac OSX install issue: SOLVED
by Greg Williams 19 Feb '08

19 Feb '08
Raytracing
by Bernard Heymann 19 Feb '08

19 Feb '08
Mac OSX install issue
by Greg Williams 19 Feb '08

19 Feb '08

19 Feb '08
Viewing mode
by James Fethiere 19 Feb '08

19 Feb '08

18 Feb '08

16 Feb '08
Chimera user, about 'turn' command
by Aguang Dai 15 Feb '08

15 Feb '08
zone tool in volume rendering
by William Jeffrey Triffo 14 Feb '08

14 Feb '08
save volume histogram transfer function
by William Jeffrey Triffo 14 Feb '08

14 Feb '08
Per-model clipping plane flickering
by Tom Goddard 14 Feb '08

14 Feb '08
Opaque volume planes
by Tom Goddard 12 Feb '08

12 Feb '08
Split into models
by Sadler, Evan 12 Feb '08

12 Feb '08
selection shadow is fixed
by jean-francois menetret 11 Feb '08

11 Feb '08

11 Feb '08
selection shadow
by jean-francois menetret 11 Feb '08

11 Feb '08
split-map
by Gatsogiannis, Christos 08 Feb '08

08 Feb '08
regd. DMS
by Vinay Kumar 08 Feb '08

08 Feb '08
clipping: solids or interior surfaces
by Ian Yarbrough 07 Feb '08

07 Feb '08

07 Feb '08
using IDLE
by Ben Keshet 07 Feb '08

07 Feb '08
clipping related models identically
by Eric Pettersen 06 Feb '08

06 Feb '08
Planes feature in the Volume Viewer
by William Jeffrey Triffo 05 Feb '08

05 Feb '08
Contact/clash detection for HETATMs
by Jonathan Magasin 05 Feb '08

05 Feb '08
Aligning two residues same name
by Elaine Meng 05 Feb '08

05 Feb '08

04 Feb '08
Aligning two residues same name
by Francesco Pietra 04 Feb '08

04 Feb '08
Fwd: Aligning two residues same name
by Francesco Pietra 04 Feb '08

04 Feb '08

01 Feb '08
Loading prmtop/mdcrd with partial workout
by Francesco Pietra 01 Feb '08

01 Feb '08
screening
by snoze pa 01 Feb '08

01 Feb '08
graphics card question (survey?)
by William Jeffrey Triffo 31 Jan '08

31 Jan '08
fourier transforms
by Matt Shawkey 31 Jan '08

31 Jan '08
Surface color
by James Fethiere 30 Jan '08

30 Jan '08

29 Jan '08
average vs ensemble
by Rachel Scherer 29 Jan '08

29 Jan '08
coordinates
by hsosa@aecom.yu.edu 25 Jan '08

25 Jan '08

24 Jan '08
volume visualization
by Enrico Malito 24 Jan '08

24 Jan '08
Save a transformed density map
by Keren Lasker 24 Jan '08

24 Jan '08
Chimera batch surface exporter
by Trent Grover 24 Jan '08

24 Jan '08

24 Jan '08

22 Jan '08
VRML alpha vs 1-alpha
by Nils Becker 22 Jan '08

22 Jan '08
(no subject)
by jean-francois menetret 21 Jan '08

21 Jan '08
visualizing density map
by francesco zonta 20 Jan '08

20 Jan '08

18 Jan '08
VRML rendering options?
by Nils Becker 18 Jan '08

18 Jan '08
Fwd: Re: Bug (?) with EnsembleCluster
by Francesco Pietra 17 Jan '08

17 Jan '08