- Chimera-users - RBVI Mailing Lists

help! questions about Join Models
by Joyce Yang 08 Sep '11

08 Sep '11

Hi, I am trying to understand what would exactly happen when join two peptide fragment together. My question is how Chimera manage to avoid any collision of atoms from two fragments. Is there any automatic minimization going on while using this Join Models function? Or it is actually possible to see overlapped coordinates of atoms in space after joining two fragments. Thank you very much. Joyce Yang

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color surface based on NMR Order parameters
by lalit.deshmukh＠huskymail.uconn.edu 08 Sep '11

08 Sep '11

Hello, I like the 'surface color ' feature in Chimera. I think, right now, the surface can be colored by radius, height, volume data and so on.. Is it also possible to color the surface based upon the NMR order parameters or intensity ratios (it will be an Excel file containing just two columns: residue numbers and the respective parameter values)? Or this can be done in some other way? Thanks in advance, Regards, Lalit Deshmukh, University of Connecticut Storrs, CT 06269

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Chimera daily-builds: session support for Animate extension
by Darren Weber 07 Sep '11

07 Sep '11

Hi, There is a recent addition to daily-builds to create a scene called 'session'. It can be seen in the Utilities > Animation dialog. The purpose of this scene is to enable easy, quick return to the saved session state after making a few changes, without reloading the session again. There are two potential problems with this new addition: 1. Some of the saved session data or properties may not be supported by the scene facility, yet. Elaine recently sent me an example session that is not yet supported by the scene facility; it contains a 'selection set' that raises an exception in the scene code. Similar problems may arise with other data models or properties. 2. Assuming everything in a session is supported by the scene facility, the 'session' scene should work. That is, it will work only while all the data that it refers to (e.g., models) are present. If changes result in removing any model data that is within the 'session' scene, the scene will contain 'orphaned' references and it will work only on the remaining model data (if any). When data is removed (closed), the scene facility will issue a prompt (warning) about how it will impact the functionality of the scene(s). This new feature to save/restore sessions is experimental in the daily-builds. For anyone using a daily-build for any mission-critical work, it may be handy to have a work around for the above problems. Try making the following changes to $CHIMERA_INSTALL_PATH/share/Animate/Session.py: 1. Comment out line 51 ("Animate.scenes.append('session')") and type 'pass' beneath it (using the same tabbed indentation). This will only disable the creation of a 'session' scene after restoring any session. All other session support remains enabled for scenes. 2. To completely disable all session support in the Animate extension, comment out all the statements that start with "chimera.triggers.addHandler". 3. If you have no need for anything in the Animate extension, completely remove it by deleting all of the content in $CHIMERA_INSTALL_PATH/share/Animate -- Darren -- Darren L. Weber, Ph.D. Programmer/Analyst on Chimera Development Team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco Mission Bay Campus (MC 2240), Genentech Hall (Room N453) 600 16th Street, San Francisco, CA 94158-2517 dweber[at]cgl.ucsf.edu, (415) 488-5439 (google voice) http://www.cgl.ucsf.edu/chimera/

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Re: [Chimera-users] inter-atomic distances do not show in session after daily build upgrade
by Elaine Meng 07 Sep '11

07 Sep '11

Hi Boaz, Generally it is better to use "Help... Report a Bug" and attach the session so that we have the data, but in this case you don't need to do it -- I just reproduced the problem in my own little test session with one distance. I will report the bug and put you on the CC list. I almost always use daily builds too, but since they aren't tested, occasionally some bug will prevent you from doing what you want or need to do. Sometimes I save more than one daily build. Otherwise, I'm hoping you will be able to use the production release (version 1.5.3) until this is sorted out. If you saved the session in a newer version, however, I understand that may not work. I will put the bug at a high priority. Sorry about that, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Sep 3, 2011, at 11:53 AM, Boaz Shaanan wrote: > Hi, > I upgraded to the latest daily build and restored a session that had quite a few distances drawn. The dashed lines don't show while the table of distances is still there. Before the upgrade the session was restored several times and always showed the distances fine. Is there a way to resuscitate the display of distances? I sure hope so. > Cheers, > Boaz

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swapna: preserve option
by Bala subramanian 07 Sep '11

07 Sep '11

Friends, 1) I used swapna command with preserve true option but chimera complains it as mangled specifier. The preserve option is denoted in online documentation http://plato.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/swapna.html 2) Just for a try i downloaded the 1VT7.pdb and changed the Guanine (first residue in chain A) to Adenine: swapna A :1.A but i found that added A is rotated. I mean the plane of A is not matching with that G (originally present in the structure). I am not sure if the preserve option is working. To be precise, i want added base to have the same plane as the original one. Thanks, Bala

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Cocoa-Togl
by Alexander Agathos 06 Sep '11

06 Sep '11

Hi, I have seen a patch concerning compiling Togl (a software component of Chimera) in Cocoa based TCL/TK http://plato.cgl.ucsf.edu/trac/chimera/browser/trunk/foreign/Togl/togl-coco… The problem is that I can't compile it because of the function in the patch : WindowRef r = TkMacOSXDrawableWindowRef(d); The function TkMacOSXDrawableWindowRef does not exist anymore. Is it possible to guide me on what I need to do? Cheers, Alexander.

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play movie forward then backward - script command?
by Gesa Volkers 01 Sep '11

01 Sep '11

Dear Chimera-Programmers, I like to create a movie in chimera by using a txt script and have some questions. I saw that it is possible to check the box "play forward then backward" in the movie recorder but it does not work when I check the box and then run my script to create the movie (maybe this is not suprising..). How can I include this command into my script commands? Another question. If I use the supersampling command, is it right to use the command as follows: movie record fformat png supersample 4 OR movie record fformat png supersample 4x4 Somehow I cannot see a difference in quality if I use the supersample command like this or if I do not use it at all, so I assume that something is wrong. Also the mp4-file size is always the same. And a third question: I liked to upgrade Chimera to the current version (I use 1.5 (build 31025) 2010-07-20). But after the upgrade all my old saved sessions did not work anymore. Is there a solution for this? Because that keeps me from upgrading.. Thank you in advance for your help! I use Chimera a lot and I am always surprised how helpful the tutorials are and how fast the programmers respond to the users. Gesa -- Gesa Volkers Institut für Biochemie, Molekulare Strukturbiologie Felix-Hausdorff-Straße 4 17489 Greifswald Germany +49 (3834)-864392

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Numbering helices sequentially
by George Tzotzos 01 Sep '11

01 Sep '11

I've been looking in the archive for a procedure describing the sequential numbering (and differential colouring, if possible) of protein helices to no avail. I'd appreciate if anyone could suggest a relevant procedure. Thanks in advance George

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fit molecule with Laplacian filtered map
by Noboru I 31 Aug '11

31 Aug '11

Hello, This is my first time trying to apply the Laplacian filter to a cryo-EM map in Chimera before I perform the global search to fit my crystal structure. However, the resulting map looks like the original map blown up into million pieces with positive and negative density showing. I get the same effect even after I "smooth" the map with the Gaussian filter first. Could someone advise me on how I could use this Laplacian filtered map information to better fit my molecule into the original EM map? Thanks for your help in advance. Noboru

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chemdraw addins
by Bill Wuest 31 Aug '11

31 Aug '11

Hi, I am a big fan of your software and would like to use it in greater capacities (primarily for drug discovery). Is there a way to dock molecules (or better yet import chemdraw files) into chimera and then swap those structures in for ligands bound to crystal structures? I would like to model proposed compounds into a binding site of a protein and riboswitch both of which have the ligand bound in the crystal structure. Ideally I would like to import a chemdraw file which could be minimized by chimera and then be able to limit the docking to the ligand binding area and minimize again. That way I can see how the new analog changes the conformation of the protein. Any help would be greatly appreciated! If it would be easier to chat on the phone please feel free to call the number below. Have a great week! -Bill Wuest ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Dr. Bill Wuest Assistant Professor of Chemistry Temple University 130 Beury Hall, Office 448 1901 N. 13th St. Philadelphia, PA 19122 Phone: 215-204-7167 Email: wwuest(a)temple.edu

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(no subject)
by Fakron, Osama Mohamed 29 Aug '11

29 Aug '11

Hello My name is Osama M.Fakron , I am PhD student in Mechanical &Material School at Washington State University , I am working on reconstruct 3D image from SEM 2D images by EM3D software ,I am using Chimera for viewing my reconstructed images , I need some help in getting 3D position for any point in my reconstructed image , and also your supporting is appreciated. All the best for you Osama

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hardware stereo switching between distal and proximal when rotating
by frederick lee 29 Aug '11

29 Aug '11

dear chimera community, i have experienced this issue for some time now. i don't think this is happening with other software like pymol, dsvisualizer, MOE, etc given the same computer and hardware setup. somehow when viewing in hardware stereo mode (sequential stereo), the model will switch back and forth between proximal and distal views during rotations. is there a particular chimera setting that will prevent such from happening. thanks much. fred

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Entra nella mia rete su LinkedIn
by Chinmaya Joshi tramite LinkedIn 29 Aug '11

29 Aug '11

LinkedIn ------------ Chinmaya Joshi ha chiesto di aggiungerti ai suoi collegamenti su LinkedIn: ------------------------------------------ Vorrei aggiungerti alla mia rete professionale su LinkedIn. Accetta l'invito di Chinmaya Joshi http://www.linkedin.com/e/fihlc9-grxnbthx-1b/s9zCzPfFBIFwqUg8JgtGw69rcczGuT… Visualizza l'invito di Chinmaya Joshi http://www.linkedin.com/e/fihlc9-grxnbthx-1b/s9zCzPfFBIFwqUg8JgtGw69rcczGuT… ------------------------------------------ SAPEVI CHE LinkedIn può trovare le risposte alle tue domande più difficili? Pubblica le domande più impegnative su Risposte di LinkedIn e potrai avvalerti dell'esperienza dei migliori professionisti al mondo. http://www.linkedin.com/e/fihlc9-grxnbthx-1b/ask/inv-23/ -- (c) 2011, LinkedIn Corporation

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Re: [Chimera-users] electron density in Chimera
by Elaine Meng 27 Aug '11

27 Aug '11

On Aug 26, 2011, at 1:24 AM, Stefano Luciano Ciurli wrote: > Hello, > for a paper reporting a new structure, I would like to make a figure with Chimera, but I need a map that can be read. I have an mtz map that can be read with Coot, but I think I need to convert it to a format that Chimera can read. I cannot use the EDS server, because the file has not been released on the PDB. > How do I do that? > Stefano Hi Stefano, I didn't know anything about MTZ format, but found some explanation in the PHENIX mailing list that the program PHENIX can do the conversion: <http://phenix-online.org/pipermail/phenixbb/2011-March/016881.html> >From that message, "it's not a simple file format conversion. In this case MTZ file is supposed to contain Fourier map coefficients, and Xplor formatted file will contain Fourier image of electron density map (typically simply called "electron density map"). So this converson also involves a FT. " The PHENIX developers provide documentation and downloads for Linux and Mac. <http://www.phenix-online.org/version_docs/dev-713/phenix_documentation.html> Here's a list of the density formats that Chimera "knows": <http://plato.cgl.ucsf.edu/chimera/docs/UsersGuide/filetypes.html#volume> Other Chimera developers or users may know more -- so it's generally better to send Chimera questions to chimera-users(a)cgl.ucsf.edu (which I CC'd here) instead of to me directly. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco

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MatchMaker in version 1.5.3 (build 33475)
by John Rose 25 Aug '11

25 Aug '11

Hi, I have been using chimera since the late 1990s. In the previous versions I could use MatchMaker to superimpose two molecules and all the atoms were moved with the model. Noe I find that when I use MatchMaker the models are aligned BUT the non-reference structures shoe up in a licorice stick representatuin and I have not been able to either (1) generate a ribbon drawing of the non-reference structures or (2) get an all atom view of the non-reference structures. Am I missing something? The two structures are 1wdn and 1hpb. This happens on both the MAC and Linux platforms. This feature is important to several classes I teach so any help you can give me would be greatly appreciated. John John Rose Ph.D. Associate Professor B204B, The Fred C. Davison Life Sciences Complex 120 Green Street Department of Biochemistry and Molecular Biology University of Georgia Athens, GA 30602-7229 ========================================= Phone: 706-542-1750 Fax: 706-542-3077

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Followup to my last question on MatchMaker
by John Rose 25 Aug '11

25 Aug '11

It looks like there is something going on with PDB entry 1HPB that is causing the problem. John John Rose Ph.D. Associate Professor B204B, The Fred C. Davison Life Sciences Complex 120 Green Street Department of Biochemistry and Molecular Biology University of Georgia Athens, GA 30602-7229 ========================================= Phone: 706-542-1750 Fax: 706-542-3077

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molecular surface isolated to chain
by Jeffrey Kentner 24 Aug '11

24 Aug '11

Hello, I am trying to create a nice aesthetic model of a protein binding to DNA. When I show molecular surface, the program doesn't seem to be able to differentiate between the DNA chain and the protein chain. I either end up with a surface on the DNA which is not fully closed, or if I extend the surface via the 'surface zone' it simply begins to cover the protein as well... I have consulted the documentation and can not find any description of how one would isolate the molecular surface to a particular chain. Is this not possible in Chimera? Cheerio, Jeffrey

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SSEHUnter and SSEBuilder questions
by Kristin Parent 24 Aug '11

24 Aug '11

Hello, I was hoping you could help me out. I am trying to locate secondary structure elements in an individual subunit of an icosahedral virus from a cryo-reconstruction. I have the entire virion in pif format and would like to use the density from a single subunit using SSEHUnter and SSEBuilder. I am not sure how best to get the volume data as a useable mrc input for this tool. I tried using the volume eraser to eliminate other areas in the map that are not the subunit I'd like. When I save the map and then the session, the subunit looks fine in the session, but if I open the subunit mrc file in a new session, I get what appears to be inverse density (the stuff I erased), and in the volume viewer, the density looks inverted. If I move the slide bar to the left, I end up with a solid cube. I am either doing something horribly wrong, or this is maybe not the best method for excising my subunit??? Please advise the best approach to creating a subunit mrc file that can be used by SSEHunter. Thanks in advance! Kristin Kristin Parent, Ph.D. University of California, San Diego Department of Chemistry and Biochemistry 9500 Gilman Drive, NSB 4104A, MC-0378 La Jolla, CA, 92093-0378 (858) 534-8038

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(no subject)
by a kauz 24 Aug '11

24 Aug '11

I am currently trying to extract data (x,y,z coordinates) from a PDB file generated by Chimera (pdbrun command) The file looks like this: MODEL 1 HETATM 1 **** 1 7881.2318439.71911918.53 1.00 0.00 H HETATM 2 **** 2 7878.3608863.83911538.22 1.00 0.00 H HETATM 3 **** 3 7362.1978948.58411340.85 1.00 0.00 H HETATM 4 **** 4 8109.6319067.12510778.80 1.00 0.00 H HETATM 5 **** 5 8512.9689160.81011582.47 1.00 0.00 H HETATM 6 **** 6 8368.0819128.66911020.52 1.00 0.00 H HETATM 7 **** 7 7260.6139750.88411592.71 1.00 0.00 H HETATM 8 **** 8 5841.5699031.23313127.43 1.00 0.00 H HETATM 9 **** 9 6579.8098604.13912097.33 1.00 0.00 H HETATM 10 **** 10 7584.5978302.09511466.04 1.00 0.00 H HETATM 11 **** 11 8520.92710251.0411690.68 1.00 0.00 H HETATM 12 **** 12 9185.69810212.1111417.11 1.00 0.00 H (this is just an extract) How can I know how many decimal numbers each coordinate has? is there a way to set how many decimal numbers will be reported? or to put some kind of tab separation between the coordinates? thanks, Annamaria

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Re: [Chimera-users] creating a peptide bond between two fragments
by Eric Pettersen 23 Aug '11

23 Aug '11

On Jun 7, 2011, at 2:30 PM, Glenn Millhauser wrote: > Hi Folks, > I am trying to add a four amino acid segment to the N-terminus of > a protein in the pdb. I can generate the four residue stretch and > move its C-term close to the N-term of the structured protein. I > can then select the C' and N atoms, which are about 1.0 Angstrom > apart. At that point, I am stuck. Not sure how to add a bond and > then create a proper structure. I've played around with Join > Models, but no luck. Without a peptide bond recognized by Chimera, > ribbons are discontinuous. Any ideas? > Many thanks, > glenn There is now a section of the Join Models page specifically for joining two peptides, so this problem should be easy to solve in the future. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu

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a simple question about multiple sequence alignment
by Lan Hua 22 Aug '11

22 Aug '11

Hi all, I want to use chimera to create a multiple sequence alignment which will be used to build a model. From elsewhere, I know the pdb id of desirable templates, but I don't know how to create the alignment in the Chimera. Any inputs will be very much appreciated. Thank you! Best, Lan

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Fwd: Showing more than a single centroid trace
by Francesco Pietra 22 Aug '11

22 Aug '11

There is still a problem that had previously escaped my attention. I.e., after the centroid sequence is obtained for model 0 and residue 1, I run the movie for model 1 and residue 2. That's OK, however the second series of centroids starts with progressive number where the first one had ended plus one (if the first series was 1-250, the second series starts from 251). This means that the first part of centroids for model 1 (corresponding to the centroids for model 0, i.e., 250) is not shown. I used define centroid radius ... color ... #modelnumber:residuename & :residuenumber where the residuename is the same for the two series of centroids. Can the command be modified so that both complete series of centroids is shown? I am using chimera production version 1.5.3 (build 33475) 2011-05-24 17:23:26 GMT on Debian i386 (I found this more stable than on Debian amd64 with GTX-580 as the sole graphic cards) Thanks francesco pietra ---------- Forwarded message ---------- From: Francesco Pietra <chiendarret(a)gmail.com> Date: Thu, Aug 18, 2011 at 8:08 PM Subject: Re: [Chimera-users] Showing more than a single centroid trace To: Eric Pettersen <pett(a)cgl.ucsf.edu> On Thu, Aug 18, 2011 at 7:48 PM, Eric Pettersen <pett(a)cgl.ucsf.edu> wrote: > Try selecting just the one ligand first with this: > sel #0:residuename & #0:residuenumber > then it and the environment around it with: > sel sel z<5 > --Eric That works fine, thank you very much francesco > Eric Pettersen > UCSF Computer Graphics Lab > http://www.cgl.ucsf.edu > On Aug 18, 2011, at 10:36 AM, Francesco Pietra wrote: > > On Thu, Aug 18, 2011 at 7:07 PM, Elaine Meng <meng(a)cgl.ucsf.edu> wrote: > > HI Francesco, > > Just put the model number wherever you need it, with no space before residue > name or number, maybe something like: > > sel #0:residuename & #0:residuenumber z<5 > > For me that works between the three ligands only. I.e, with a large > z<20, all the three residues are highlighted, while with z<3 only the > residue with the specified residue number is highlighted. The number > of atoms at the bottom line correspond. For example, with z<20, 6 > atoms, 3 bonds (three diatomic molecules) > > francesco > > > Elaine > > On Aug 18, 2011, at 9:46 AM, Francesco Pietra wrote: > > Hi Elaine: > > Thanks a lot. Could you also help me as how to find the environment of > > the moved ligand, when there are three of them with the same residue > > number? > > While define centroid works nicely with: > > define centroid radius# color # :residuename & :residuenumber > > sel #modelnumber :residuename & :residuenumber z<# > > does not. Could the command be modified to refer to only one of the > residues? > > Thanks > > francesco > > On Wed, Aug 17, 2011 at 7:34 PM, Elaine Meng <meng(a)cgl.ucsf.edu> wrote: > > Hi Francesco, > > If your movies are different model numbers, you can put model number before > residue name, for example: > > #0:hem > > You can see what models you have in the Model Panel (under Favorites in > menu). > > Elaine > > On Aug 17, 2011, at 7:11 AM, Francesco Pietra wrote: > > Hi Elaine; > > I selected with line command the molecule that was giving the centroid > > sequence. I was interested in the surroundings of that biatomic > > molecule at various frame numbers. What I said, is that this is > > possible only for the first movie. On subsequent movies, superimposed > > to the first one, the line command always refers to that molecule of > > the first movie. > > francesco > > On Tue, Aug 16, 2011 at 7:38 PM, Elaine Meng <meng(a)cgl.ucsf.edu> wrote: > > Hi Francesco, > > You cannot select centroid objects with a command -- they do not have > residue or atom names. You can only select them by clicking their lines in > the Axes/Planes/Centroids dialog, or by Ctrl-clicking on them in the Chimera > graphics window. > > Elaine > > On Aug 16, 2011, at 9:36 AM, Francesco Pietra wrote: > > Hi Elaine: > > I'll try your advice as soon as possible. However, turning mode1 out > > of view in model window while playing movie for model 1, the centroid > > for mode1 is still seen above model 0 and the trace for centroid for > > model 0 . What I could not do was to select the centroid for model 1, > > in order to highlight it. Command "sel :residuename" always selected > > the centroid for model 0. > > francesco > > On Tue, Aug 16, 2011 at 5:51 PM, Elaine Meng <meng(a)cgl.ucsf.edu> wrote: > > Hi Francesco, > > I'm not sure I understand what you are asking. Maybe you are saying that > when you hide a model, the centroid is also hidden? > > Instead of hiding the model with the Model Panel "Shown" checkbox or command > "~modeldisplay", which hides everything in the model, you can undisplay the > protein parts and leave the centroid displayed. For example, if I had > protein models #0 and #1 and also centroids for each of those, I could > undisplay the protein part only of #0: > > ~display #0 > > ~ribbon #0 > > ~surf #0 > > (commands to undisplay atoms/bonds, ribbon, and molecular surface of model > #0). Then, you would have the protein #1 plus the centroids of both #0 and > #1 displayed. I hope this helps, > > Elaine > > ---------- > > Elaine C. Meng, Ph.D. > > UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab > > Department of Pharmaceutical Chemistry > > University of California, San Francisco > > On Aug 15, 2011, at 11:36 PM, Francesco Pietra wrote: > > Hello: > > I would like to show several centroid traces for model 0, 1, 2, .. > > Actually, it is the same model, differing, in the movies, for the > > protein fluctuations. > > What I did, was to superimpose movie for model 1 to the already done > > movie for model 0, hiding the protein for model 1 and choosing a > > different color for the centroid. Doing that, the instant position of > > the centroid can only be color-highlighted for model 0. > > I wonder whether there is a better procedure to show the various > > centroid traces above a single protein model. > > thanks > > francesco pietra > > > > _______________________________________________ > > Chimera-users mailing list > > Chimera-users(a)cgl.ucsf.edu > > http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users > > > > > _______________________________________________ > > Chimera-users mailing list > > Chimera-users(a)cgl.ucsf.edu > > http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users > > > > > _______________________________________________ > > Chimera-users mailing list > > Chimera-users(a)cgl.ucsf.edu > > http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users > > > > > _______________________________________________ > Chimera-users mailing list > Chimera-users(a)cgl.ucsf.edu > http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users > > > > > >

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register file extension .xmp for volume data
by Dieter Blaas 22 Aug '11

22 Aug '11

Hi, I routinely visualize spider format volume data that are output from Xmipp with the extension .xmp. This extension is not registered in Chimera and I have to scroll through the formats page each time to select 'spider volume data' or open the file with 'chimera spider:xxx.xmp'. Is there a way to make Chimera recognize this extension as 'spider format' automatically? There was an older Windows version that allowed to tell Chimera that all following data were of the same format as the first one but I have not seen this in any of the recent Linux versions. Thanks for hints, D. - ------------------------------------------------------------------------ Dieter Blaas, Max F. Perutz Laboratories Medical University of Vienna, Inst. Med. Biochem., Vienna Biocenter (VBC), Dr. Bohr Gasse 9/3, A-1030 Vienna, Austria, Tel: 0043 1 4277 61630, Fax: 0043 1 4277 9616, e-mail: dieter.blaas(a)meduniwien.ac.at ------------------------------------------------------------------------

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<no subject>
by Sacha De Carlo 22 Aug '11

22 Aug '11

unsuscribe

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Morph with Chimera: how to make visible connection/interaction in Morph
by WENHE ZHONG 19 Aug '11

19 Aug '11

Dear all, I would like to show the visible metal-residue interaction during the Morph movie. Anyone knows how to do that in Chimera? Thank you. King regards, Wenhe

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