Chimera-users

chimera-users@cgl.ucsf.edu

  • 5 participants
  • 6983 discussions
Cannot resample to voxel size of 1
by Ryan Harlich 22 Jul '19

22 Jul '19

22 Jul '19

22 Jul '19
RMSD Chimera
by Ishita Gupta 22 Jul '19

22 Jul '19

18 Jul '19
how to obtain information regarding complexes
by Quadir, Farhan (MU-Student) 18 Jul '19

18 Jul '19
Finding dimensions of density map
by Ryan Harlich 16 Jul '19

16 Jul '19
3 11
0 0
energy minimization
by sara20@mail.ustc.edu.cn 16 Jul '19

16 Jul '19

16 Jul '19

16 Jul '19
command lines to replace "joint models"
by wangdj7@mail.ustc.edu.cn 15 Jul '19

15 Jul '19
Parse error Chimera
by Dorfner, Maja 15 Jul '19

15 Jul '19

11 Jul '19
Issue regarding Chimera-Vina
by Prabuddha Bhattacharya 11 Jul '19

11 Jul '19
Structure overlay
by Chakraborty, Joydeep 10 Jul '19

10 Jul '19
Volumes comparison
by Dmitry A. Semchonok 09 Jul '19

09 Jul '19
Question regarding RR Distance Maps
by Meysam T. Chorsi 03 Jul '19

03 Jul '19
Cylinder coloring extension
by Thomas Marcellino 03 Jul '19

03 Jul '19
Creating a smooth disk
by Henrique C. S. Junior 02 Jul '19

02 Jul '19
Volume save after volume changes
by Ryan Harlich 01 Jul '19

01 Jul '19

27 Jun '19
Looking for an image...
by David Cohen 27 Jun '19

27 Jun '19

27 Jun '19
coloring mmCIF files
by Josef Sprinzak 27 Jun '19

27 Jun '19
Sudden Chimera issues with OSX Mojave?
by Neil Rzechorzek 27 Jun '19

27 Jun '19
time counter
by CLARA BLANES MIRA 26 Jun '19

26 Jun '19
time counter
by CLARA BLANES MIRA 26 Jun '19

26 Jun '19
Unsubscribe
by Ina Oestroem 26 Jun '19

26 Jun '19
installing vintage chimera
by Francesco Pietra 25 Jun '19

25 Jun '19
full pdb path
by petra wendler 24 Jun '19

24 Jun '19
segment and group density together
by Yangqi Gu 21 Jun '19

21 Jun '19
Chimera - mask after vop
by Ryan Harlich 18 Jun '19

18 Jun '19
Chimera local resolution color
by Dmitry Semchonok 14 Jun '19

14 Jun '19
Stereo glasses
by Jonathan Sheehan 13 Jun '19

13 Jun '19
Script to generate and fit structures
by Ahmad Khalifa 12 Jun '19

12 Jun '19
counter ions
by patrizio.arrigo@ge.ismac.cnr.it 12 Jun '19

12 Jun '19

11 Jun '19

11 Jun '19
APBS
by Karl R Voigtritter 11 Jun '19

11 Jun '19
Regarding MD simulation
by Divakar S 10 Jun '19

10 Jun '19

10 Jun '19
voxel coordinates
by Andrew Garven 07 Jun '19

07 Jun '19

06 Jun '19
Chimera question
by Mike de la Flor 05 Jun '19

05 Jun '19

03 Jun '19
animation commands in a morph movie
by Natesh Singh 31 May '19

31 May '19

31 May '19
Select by attribute value in a .psf file
by MARIA CLARA BLANES MIRA 29 May '19

29 May '19
How to get the best references
by temban billyhp 28 May '19

28 May '19
How to get the best references
by temban billyhp 28 May '19

28 May '19
(no subject)
by MARIA CLARA BLANES MIRA 23 May '19

23 May '19

22 May '19

20 May '19

17 May '19
display bond lengths and angles
by Thomas Evangelidis 17 May '19

17 May '19
Still won't work after libfreetype.so* and libz.so* removal
by Яцкевич Максим 14 May '19

14 May '19
Upload color scheme
by Cornelius Hunter 10 May '19

10 May '19
Volume Step default
by Rebecca Swett 10 May '19

10 May '19

08 May '19
FW: Association info
by Hernando J Sosa 08 May '19

08 May '19

08 May '19
RR distance map, scale normalization
by Arvind SHARMA 07 May '19

07 May '19
4 10
0 0

06 May '19
How do I find the active site?
by Abryn Jeuness Luna 06 May '19

06 May '19
AutoDock Vina
by Hernando J Sosa 02 May '19

02 May '19
get_view, set_view
by Pranav Shah 02 May '19

02 May '19
Installing vina webserver?
by Antoine Daina 01 May '19

01 May '19
Deleting data contained in a session
by David Sáez 29 Apr '19

29 Apr '19

29 Apr '19
A query
by Bhanu Sharma 26 Apr '19

26 Apr '19

25 Apr '19
Surface representation
by MARIA CLARA BLANES MIRA 25 Apr '19

25 Apr '19
Chimera Settings
by Nuwan De Silva 24 Apr '19

24 Apr '19
high quality surface figure
by 陈柳青 24 Apr '19

24 Apr '19
write PDB from MDmovie
by Kenyon, Victor 23 Apr '19

23 Apr '19

23 Apr '19
two-letter ID of polypeptide
by Pu Qian 22 Apr '19

22 Apr '19

21 Apr '19
Comparison of 2 structures
by Dmitry A. Semchonok 21 Apr '19

21 Apr '19
shape sphere
by Francesco Pietra 21 Apr '19

21 Apr '19
Origin of transformation matrices
by Daniel Asarnow 19 Apr '19

19 Apr '19

18 Apr '19
Using ChimeraX in no-gui mode
by James Starlight 17 Apr '19

17 Apr '19
FW: UCSF Chimera License Inquiry
by Williams, Joanne 16 Apr '19

16 Apr '19
Marker Link Text Label
by Carlos G. Oliver 16 Apr '19

16 Apr '19
Error in starting Chimera (Return code: -1073741819)
by 박지민(Park, Jimin) 15 Apr '19

15 Apr '19
Helical Parameter estimate using Chimera
by Rejaul Hoq Nayem 15 Apr '19

15 Apr '19

15 Apr '19
Fw: Properly citation
by Williams, Joanne 15 Apr '19

15 Apr '19

15 Apr '19

14 Apr '19
Area central hole oligomer
by Roberto Marotta 13 Apr '19

13 Apr '19

13 Apr '19

12 Apr '19
Hidden water molecules
by Michael Sharkey 11 Apr '19

11 Apr '19
Constructing biological assmebly
by Boaz Shaanan 10 Apr '19

10 Apr '19

09 Apr '19
3 16
0 0

05 Apr '19

04 Apr '19
Sample 3d models of whole cells
by Fatlum Hajredini 04 Apr '19

04 Apr '19
PDB file of D-amino acids
by Mohsen Asadbegi 04 Apr '19

04 Apr '19
Visualisation in Headless Chimera
by James Starlight 03 Apr '19

03 Apr '19
4 13
0 0

03 Apr '19
Hi good morning
by prasad ssv 30 Mar '19

30 Mar '19
rna-protein complex
by soo khim 29 Mar '19

29 Mar '19

28 Mar '19

27 Mar '19
focus over N frames
by Elena Zehr 27 Mar '19

27 Mar '19
Save multiscale model as PDB?
by Divjak Maja 26 Mar '19

26 Mar '19
Change map gridding for better display
by Ahmad Khalifa 25 Mar '19

25 Mar '19
creating a new color palette - viridis
by Saladi, Shyam M. 22 Mar '19

22 Mar '19
Using Chimera _ Query
by Hina Khan 22 Mar '19

22 Mar '19
Constrainted fitting
by Christoph Wigge 22 Mar '19

22 Mar '19
(no subject)
by JOHN FLANAGAN 21 Mar '19

21 Mar '19
color key in chimera X
by Pranav Shah 18 Mar '19

18 Mar '19
drawing axes of rotational symmetry
by Arvind SHARMA 15 Mar '19

15 Mar '19
32-bit release
by Marwa Elnaiem 14 Mar '19

14 Mar '19
Re: [Chimera-users] CASTp to Chimera
by Elaine Meng 13 Mar '19

13 Mar '19
MD simulation fails with barostat
by Simon Wheeler 13 Mar '19

13 Mar '19
CHIMERA ISSUES
by Acco . 13 Mar '19

13 Mar '19

12 Mar '19
membrane boundaries
by Anaswara Ashok 12 Mar '19

12 Mar '19
OS differences in Chimera
by Marco J. Müller 11 Mar '19

11 Mar '19
font problem
by 管泓翔 11 Mar '19

11 Mar '19
Deterministic traversal of a chemical graph
by Jaime Rodríguez-Guerra Pedregal 08 Mar '19

08 Mar '19
Saving files from MD Movie
by Divjak Maja 05 Mar '19

05 Mar '19

02 Mar '19
Re: [Chimera-users] Morph Help
by Elaine Meng 01 Mar '19

01 Mar '19
Chimera using question
by Khải Trần Gia 28 Feb '19

28 Feb '19
Chimera Help
by Debamita Paul 28 Feb '19

28 Feb '19
Seeking for help
by temban billyhp 27 Feb '19

27 Feb '19
Installation problem on Fedora 29
by Murpholino Peligro 26 Feb '19

26 Feb '19

21 Feb '19
Measure angle and effect length
by Shishir Adhikari 21 Feb '19

21 Feb '19

21 Feb '19
Chimera PDB2PQR
by Sowmya Indrakumar 21 Feb '19

21 Feb '19
Chimera
by Giovanny Rincon S 21 Feb '19

21 Feb '19
Broad selection with command
by masoud aliyar 21 Feb '19

21 Feb '19
STL/OBJ 3D models exported by Chimera cannot be read in Office 2019
by Jaime Rodríguez-Guerra Pedregal 20 Feb '19

20 Feb '19
Chimera laptop features required
by p.tapi@alice.it 20 Feb '19

20 Feb '19

19 Feb '19

19 Feb '19
rmf3 control in Chimera
by Daniel Ziemianowicz 15 Feb '19

15 Feb '19
Question about AutoDock
by Cassidy Terrell 13 Feb '19

13 Feb '19
Troubleshooting Docking Problem
by Alexandru Buhimschi 13 Feb '19

13 Feb '19
Measure unmodeled density
by Chen Sun 13 Feb '19

13 Feb '19
Volume Viewer Planes
by Michael Elbaum 12 Feb '19

12 Feb '19
Linking structure to Multialign viewer
by Ahmad Khalifa 12 Feb '19

12 Feb '19
using a surface as a mask for a volume
by Michael Elbaum 11 Feb '19

11 Feb '19

11 Feb '19
Question
by Vito Calderone 07 Feb '19

07 Feb '19
Running vina locally
by Sam Freeman-Fox 06 Feb '19

06 Feb '19
How to color density maps using markers?
by Ahmad Khalifa 05 Feb '19

05 Feb '19
Help: 'broken pipe' error
by Mungo Carstairs (Staff) 04 Feb '19

04 Feb '19
Slicing/Subdividing Models in Chimera
by Mauser, Jonathon 04 Feb '19

04 Feb '19
Display showing a gap in my chain
by Ahmad Khalifa 04 Feb '19

04 Feb '19
question
by Craig Scoville 31 Jan '19

31 Jan '19
rmsd graph
by SEFA ÇELİK 31 Jan '19

31 Jan '19
Morph conformation - side chains
by arrafzaher@campus.technion.ac.il 28 Jan '19

28 Jan '19
babel-type not found
by Ryan Cairns 25 Jan '19

25 Jan '19
Select multiple chains
by Racaniello, Vincent R. 25 Jan '19

25 Jan '19
Update VDW Dots During Torsion Rotation
by Brian E Coggins 23 Jan '19

23 Jan '19

23 Jan '19
Serine 371 in a protein (ATR)
by leifepeterson@sbcglobal.net 22 Jan '19

22 Jan '19

21 Jan '19
I-TASSER secondary structure
by nadineh.1991@web.de 21 Jan '19

21 Jan '19
match command
by Hernando J Sosa 20 Jan '19

20 Jan '19
question
by Willenbring, Holger 18 Jan '19

18 Jan '19
Volume blob and sum internal map value(s)
by Esser, Lothar (NIH/NCI) [E] 17 Jan '19

17 Jan '19