October 2013 - compbio-allhands@cgl.ucsf.edu

[Compbio-allhands] FREE Laser Toner Cartridges
by babbitt 28 Oct '13

28 Oct '13

The Babbitt lab is giving away four unused toner cartridges: HP-96A (part #C4096A). These cartridges fit HP LaserJet Series 2100/2200* (really old) printers. Please contact Joslyn Polzien atjoslyn.polzien(a)ucsf.edu<mailto:%20joslyn.polzien@ucsf.edu> if you are interested in some or all of them. *2100, 2100EP, 2100M, 2100SE, 2100TN, 2100XI, 2200, 2200D, 2200DN, 2200DT, 2200DSE, 2200DTN -- Patricia Babbitt, Professor Dept. of Bioengineering & Therapeutic Sciences 1700 4th Street, MC2550 University of California San Francisco, CA 94158 Phone: 1-415-476-3784 Email: babbitt(a)cgl.ucsf.edu Assistant: Ms. Joslyn Polzien Email: Joslyn.Polzien(a)ucsf.edu 8 AM – 12 PM: (415) 514-1214 1 PM – 5 PM: (415) 514-4861

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[Compbio-allhands] Fwd: ignite Bay Area (protein) Dynamics - November 5th
by Flowers, Nicole 28 Oct '13

28 Oct '13

Want to get together and talk science with other Bay Area researchers interested in the ways macromolecules move? Come to ignite Bay Area Dynamics (iBAD) on November 5th. Absolutely everyone is invited, from student to professor and academia to industry. Hear the latest work on dynamics in a fast, pithy form: Ignite talks are only five minutes apiece, with auto-advancing slides! Refreshments are provided and there will be plenty of time to chat with colleagues and speakers. Speakers: Susan Marqusee (Berkeley) Vijay Pande (Stanford) Jacob Corn (Genentech) Gira Bhabha (UCSF) November 5th, 2013 - 7 PM UCSF - Mission Bay Campus Byers Hall 212 More info: http://www.fraserlab.com/ibad or email Jaime Fraser (james.fraser(a)ucsf.edu<mailto:james.fraser@ucsf.edu>) or Jacob Corn (corn.jacob(a)gene.com<mailto:corn.jacob@gene.com>) Sponsored by the Protein Society (Society membership not required to attend). James Fraser, PhD Assistant Professor Department of Bioengineering and Therapeutic Sciences Office: N212C Genentech Hall, Lab: N216 Genentech Hall james.fraser(a)ucsf.edu<mailto:james.fraser@ucsf.edu> // jaimefraser(a)gmail.com<mailto:jaimefraser@gmail.com> (415) 493-8421 http://www.fraserlab.com Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Protein Society Sponsored Dynamics Meeting - Tuesday November 5th 7PM at UCSF
by Jacobson, Matt 27 Oct '13

27 Oct '13

-- Matt Sent from my iPad Begin forwarded message: From: James Fraser <jaimefraser(a)gmail.com<mailto:jaimefraser@gmail.com>> Date: October 27, 2013 12:58:39 PM PDT To: Mark Kelly <mark.kelly(a)ucsf.edu<mailto:mark.kelly@ucsf.edu>>, Tanja Kortemme <kortemme(a)cgl.ucsf.edu<mailto:kortemme@cgl.ucsf.edu>>, Agard Dave <agard(a)msg.ucsf.edu<mailto:agard@msg.ucsf.edu>>, Robert Stroud <stroud(a)msg.ucsf.edu<mailto:stroud@msg.ucsf.edu>>, Fletterick Robert <flett(a)msg.ucsf.edu<mailto:flett@msg.ucsf.edu>>, Matthew Jacobson <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>>, Andrej Sali <sali(a)salilab.org<mailto:sali@salilab.org>>, Jim Wells <Jim.Wells(a)ucsf.edu<mailto:Jim.Wells@ucsf.edu>>, Jack Taunton <taunton(a)cmp.ucsf.edu<mailto:taunton@cmp.ucsf.edu>>, Patsy Babbitt <babbitt(a)cgl.ucsf.edu<mailto:babbitt@cgl.ucsf.edu>>, Charles Craik <Charles.Craik(a)ucsf.edu<mailto:Charles.Craik@ucsf.edu>>, "Danica Fujimori" <fujimori(a)cmp.ucsf.edu<mailto:fujimori@cmp.ucsf.edu>>, Natalia Jura <natalia.jura(a)ucsf.edu<mailto:natalia.jura@ucsf.edu>>, "Degrado, William" <Bill.DegRado(a)ucsf.edu<mailto:Bill.DegRado@ucsf.edu>>, "England, Pamela" <Pamela.England(a)ucsf.edu<mailto:Pamela.England@ucsf.edu>>, John Gross <jdgross(a)cgl.ucsf.edu<mailto:jdgross@cgl.ucsf.edu>>, Bo Huang <bo.huang(a)ucsf.edu<mailto:bo.huang@ucsf.edu>>, Xiaokun Shu <xiaokun.shu(a)ucsf.edu<mailto:xiaokun.shu@ucsf.edu>>, Susan Miller <smiller(a)cgl.ucsf.edu<mailto:smiller@cgl.ucsf.edu>>, "Gestwicki, Jason" <Jason.Gestwicki(a)ucsf.edu<mailto:Jason.Gestwicki@ucsf.edu>>, "Cheng, Yifan" <YCheng(a)ucsf.edu<mailto:YCheng@ucsf.edu>>, Alan Frankel <frankel(a)cgl.ucsf.edu<mailto:frankel@cgl.ucsf.edu>>, "Narlikar, Geeta" <geeta.narlikar(a)ucsf.edu<mailto:geeta.narlikar@ucsf.edu>>, "Lim, Wendell" <Wendell.Lim(a)ucsf.edu<mailto:Wendell.Lim@ucsf.edu>>, <Shawn.Douglas(a)ucsf.edu<mailto:Shawn.Douglas@ucsf.edu>>, Chris Waddling <waddling(a)msg.ucsf.edu<mailto:waddling@msg.ucsf.edu>>, Ajay Jain <ajain(a)jainlab.org<mailto:ajain@jainlab.org>>, Adam Abate <arabate(a)gmail.com<mailto:arabate@gmail.com>>, Michael Fischbach <fischbach(a)fischbachgroup.org<mailto:fischbach@fischbachgroup.org>>, "John Kuriyan" <kuriyan(a)berkeley.edu<mailto:kuriyan@berkeley.edu>>, Jamie Cate <jcate(a)lbl.gov<mailto:jcate@lbl.gov>>, <doudna(a)berkeley.edu<mailto:doudna@berkeley.edu>>, Bryan Krantz <bakrantz(a)berkeley.edu<mailto:bakrantz@berkeley.edu>>, David Wemmer <DEWemmer(a)lbl.gov<mailto:DEWemmer@lbl.gov>>, Andreas Martin <a.martin(a)berkeley.edu<mailto:a.martin@berkeley.edu>>, Judith Klinman <klinman(a)berkeley.edu<mailto:klinman@berkeley.edu>>, <jfkirsch(a)berkeley.edu<mailto:jfkirsch@berkeley.edu>>, Ron Vale <vale(a)cmp.ucsf.edu<mailto:vale@cmp.ucsf.edu>>, James Partridge <partridge.james(a)gmail.com<mailto:partridge.james@gmail.com>>, David Sivak <david.sivak(a)gmail.com<mailto:david.sivak@gmail.com>> Cc: Jacob Corn <corn.jacob(a)gene.com<mailto:corn.jacob@gene.com>> Subject: Protein Society Sponsored Dynamics Meeting - Tuesday November 5th 7PM at UCSF Want to get together and talk science with other Bay Area researchers interested in the ways macromolecules move? Come to ignite Bay Area Dynamics (iBAD) on November 5th. Absolutely everyone is invited, from student to professor and academia to industry. Hear the latest work on dynamics in a fast, pithy form: Ignite talks are only five minutes apiece, with auto-advancing slides! Refreshments are provided and there will be plenty of time to chat with colleagues and speakers. Speakers: Susan Marqusee (Berkeley) Vijay Pande (Stanford) Jacob Corn (Genentech) Gira Bhabha (UCSF) November 5th, 2013 - 7 PM UCSF - Mission Bay Campus Byers Hall 212 More info: http://www.fraserlab.com/ibad or email Jaime Fraser (james.fraser(a)ucsf.edu<mailto:james.fraser@ucsf.edu>) or Jacob Corn (corn.jacob(a)gene.com<mailto:corn.jacob@gene.com>) Sponsored by the Protein Society (Society membership not required to attend). -- -- James Fraser, PhD Assistant Professor Department of Bioengineering and Therapeutic Sciences Office: N212C Genentech Hall, Lab: N216 Genentech Hall james.fraser(a)ucsf.edu<mailto:james.fraser@ucsf.edu> // jaimefraser(a)gmail.com<mailto:jaimefraser@gmail.com> (415) 493-8421 http://www.fraserlab.com

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[Compbio-allhands] Fwd: Postdoctoral Fellow Position - The Rockefeller University
by Jacobson, Matt 25 Oct '13

25 Oct '13

-- Matt Sent from my iPad Begin forwarded message: From: "Melanie J. Lee" <leem(a)mail.rockefeller.edu<mailto:leem@mail.rockefeller.edu>> Date: October 25, 2013 11:17:43 AM PDT To: "Melanie J. Lee" <leem(a)mail.rockefeller.edu<mailto:leem@mail.rockefeller.edu>> Subject: Postdoctoral Fellow Position - The Rockefeller University We would greatly appreciate sharing the attached position within your graduate students and postdocs. Best regards, Melanie J. Lee Administrative Assistant Center for Studies in Physics and Biology The Rockefeller University 1230 York Avenue New York, NY 10065 Tel: 212-327-8636 Fax: 212-327-8544 http://www.rockefeller.edu/research/intercenter/cenphysics

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[Compbio-allhands] 10/31/13 Seminar with Erin Carlson
by Nicole Takesono Flowers 24 Oct '13

24 Oct '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Erin Carlson Indiana Chemical Probes to Explore and Inhibit Bacterial Pathogenesis October 31, 2013 D. Fujimori, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 10/24/13 Seminar with David Bartel
by Nicole Takesono Flowers 18 Oct '13

18 Oct '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 David Bartel MIT MicroRNAs and a developmental switch in the nature of translational control. October 24, 2013 H. Madhani, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Dr. Nicholas Furnham Seminar -- Thursday, October 24th
by Flowers, Nicole 17 Oct '13

17 Oct '13

Please join Patsy Babbitt on Thursday, October 24th, 2013 3:00 – 4:00 PM Byers Hall, Room BH-215 for a talk by visiting speaker Nick Furnham, PhD Postdoctoral Fellow, Thornton Research Group EMBL-EBI (European Molecular Biology Laboratory — European Bioinformatics Institute) on Automatically Cataloguing Changes in Enzyme Chemistry with Changes in Protein Evolution for 380 Domain Superfamilies --- Joslyn Polzien Assistant to Drs. Patricia Babbitt & Tanja Kortemme Dept. of Bioengineering & Therapeutic Sciences University of California, San Francisco 8 AM – 12 PM: (415) 514-1214 1 PM – 5 PM: (415) 514-4861 joslyn.polzien(a)ucsf.edu<mailto:joslyn.polzien@ucsf.edu> Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Assistant Professor Position in Biochemistry CU Boulder
by Brian Shoichet 14 Oct '13

14 Oct '13

---------- Forwarded message ---------- From: Brian Shoichet <bshoichet(a)gmail.com> Date: Mon, Oct 14, 2013 at 11:56 AM Subject: Fwd: Assistant Professor Position in Biochemistry CU Boulder To: Ryan Coleman <ryan.g.coleman(a)gmail.com> FYI. Brian ---------- Forwarded message ---------- From: Amy E Palmer <amy.palmer(a)colorado.edu> Date: Mon, Oct 14, 2013 at 11:45 AM Subject: Assistant Professor Position in Biochemistry CU Boulder To: Amy E Palmer <amy.palmer(a)colorado.edu> Dear Colleagues I am writing to request your help in identifying candidates for a *faculty position in Biochemistry at the Assistant Professor* level at the *University of Colorado, Boulder*. In addition to establishing a vigorous research program, the new faculty will participate in teaching biochemistry or chemistry at the undergraduate and graduate levels. Candidates working in all areas of research will be considered. We have a healthy graduate program with each faculty member taking about one new graduate student a year, as well as excellent support facilities and a large amount of shared research equipment. Because the Biochemistry Program is situated within the Department of Chemistry & Biochemistry, there are many opportunities to interact with chemistry faculty, some of whom have considerable interest in biochemistry. We also have a joint graduate program with the Department of Molecular, Cellular, and Developmental Biology, located on campus, thus there are excellent interactions with molecular biologists and geneticists. There are strong connections between biochemistry and the physical sciences, and these connections are supported by an NIH-funded training program in Biophysics. Finally, we moved into a new state of the art Jennie Smoley Caruthers Biotechnology Building about 1 year ago which also houses the Department of Chemical and Biological Engineering and the BioFrontiers Institute, providing ample opportunity for cross-disciplinary and interdisciplinary interactions. The University has a strong interest in recruiting minority and women for faculty positions. There is a general feeling that simply stating in advertisements that "The University of Colorado is an Affirmative Action/Equal Opportunity Institution" is not enough. We would like to maximize chances of identifying all minorities and women who would be appropriate candidates for present and future openings in the Biochemistry Program. We would greatly appreciate it if you would bring this opening to the attention of candidates you feel are suitable. Enclosed is a copy of our position announcement. The position is advertised in Sciencejobs and Naturejobs.**** Sincerely,**** Amy Palmer ************************************ Associate Professor Department of Chemistry and Biochemistry BioFrontiers Institute UCB 596 3415 Colorado Ave Univesity of Colorado Boulder, CO 80303 303-492-1945 http:/Chem.colorado.edu/palmergroup -- Brian Shoichet, Professor http://www.uoft.bkslab.org/ University of Toronto, Leslie Dan Faculty of Pharmacy Donnelly Centre Room 604 (416) 978-7224 University of California, San Francisco Dept. of Pharmaceutical Chemistry -- Brian Shoichet, Professor http://www.uoft.bkslab.org/ University of Toronto, Leslie Dan Faculty of Pharmacy Donnelly Centre Room 604 (416) 978-7224 University of California, San Francisco Dept. of Pharmaceutical Chemistry

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[Compbio-allhands] 10/17/13 Seminar with Richard Bonneau
by Nicole Takesono Flowers 11 Oct '13

11 Oct '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Richard Bonneau NYU Integrative computational methods for learning dynamic regulatory models: application to T-cell differentiation and function October 17, 2013 A. Sczesnak, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Group leader in Computational Biology at EMBL Heidelberg
by Andrej Sali 10 Oct '13

10 Oct '13

Sent from my iPhone Begin forwarded message: > From: Christoph Mueller <cmueller(a)embl.de> > Date: October 10, 2013 at 6:30:23 AM PDT > To: sali(a)salilab.org > Subject: Group leader in Computational Biology at EMBL Heidelberg > > Dear Andrej, > > We are seeking to recruit a group leader/teamleader in Computational Biology/Bioinformatics at EMBL Heidelberg. > > Although the call is deliberately broad structural bioinformatics (e.g. modelling of protein complexes and their interactions and/or dynamics in a cellular context), image analysis/visualisation (e.g. reading out data from GFP screens, E-tomograms or visualising a virtual cell atlas) is one of the topics. I would be grateful if you could forward the attached advert to suitable candidates! > > Thanks for your help! > Christoph > -- > ---------------------------------------------------------------------------- > Dr. Christoph W. Müller > Joint Head of Structural and Computational Biology Unit > > EMBL > Meyerhofstrasse 1 > 69117 Heidelberg, Germany > > email: cmueller(a)embl.de > phone: 0049-6221-387-8320 > fax: 0049-6221-387-519 > http://www.embl.de > ----------------------------------------------------------------------------- > > > >

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compbio-allhands October 2013