May 2014 - compbio-allhands@cgl.ucsf.edu

[Compbio-allhands] Fwd: Data Scientist Position at Quid
by Tom Ferrin 30 May '14

30 May '14

-------- Original Message -------- Subject: Data Scientist Position at Quid Date: Wed, 28 May 2014 11:16:50 -0700 From: Emmanuel Yera <eyera(a)quid.com> To: tef(a)cgl.ucsf.edu Hey Tom, I hope you are doing well. Time passes so quickly, I graduated about a year ago. Work has been going well and have really been enjoying my time at Quid. I wanted to reach out and ask if you knew any students or post-docs interested in Data Science. We just opened a position (https://quid.com/careers?gh_jid=14685). Let me know what you think. Regards, - Emmanuel -- Emmanuel R. Yera, PhD Data Scientist Quid, Inc. 733 Front St, C1A San Francisco, California 94111 Mobile: +1 408 242 7171 www.quid.com <http://www.quid.com/>

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[Compbio-allhands] 5/29/14 Seminar with Johan Paulsson
by Flowers, Nicole 23 May '14

23 May '14

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus Library 220 Johan Paulsson Harvard Quantifying dynamics in single cells May 29, 2014 G. Heimberg, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Job Openings at IO
by Jacobson, Matt 15 May '14

15 May '14

Begin forwarded message: From: Patrick Weinkam <pweinkam(a)gmail.com<mailto:pweinkam@gmail.com>> Subject: Job Openings at IO Date: May 15, 2014 2:06:02 PM PDT To: Andrej Sali <sali(a)salilab.org<mailto:sali@salilab.org>>, Matt Jacobson <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>>, James Fraser <james.fraser(a)ucsf.edu<mailto:james.fraser@ucsf.edu>>, <tef(a)cgl.ucsf.edu<mailto:tef@cgl.ucsf.edu>> Hi all, In an effort to keep in touch with the good people at UCSF, I am also reaching out because my new company is undergoing a hiring push. We are looking for people with data analysis and programming skills to help us develop the next generation of energy efficient, software controlled data centers. We also have need for people with simulation backgrounds. If you know any good candidates looking for a job, please forward these job descriptions along. Hope you all are doing well! Pat Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] 5/22/14 Seminar with Cliff Brangwynne
by Flowers, Nicole 15 May '14

15 May '14

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Cliff Brangwynne Princeton Intracellular Phase Transitions and Cell Size May 22, 2014 D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Informatics Day on June 10 @ Mission Bay
by Patsy Babbitt 13 May '14

13 May '14

Save the Date! Informatics Day at UCSF: Leveraging clinical data for research June 10, 2014, 9:00 am to 5:00 pm Location: Mission Bay Conference Center We are pleased to announce the first UCSF Informatics Day. This event will showcase clinical data sources for use in basic, translational, and clinical research. Over the past few years UCSF has significantly invested in its informatics and IT footprint, providing expanded critical services to support basic, translational, and clinical research. Informatics Day 2014 will give you the opportunity to learn about the systems and tools available to support your research. The day will feature: Keynote Speaker addressing the role of informatics in biomedical research Short presentations highlighting the available systems and tools Scientific presentations by investigators who are utilizing these resources in their own research Hands on demonstrations of tools and resources available at UCSF Opportunities to meet researchers from across the campus using information resources Please join us to see how you can benefit from the expanding informatics infrastructure at UCSF. Sponsored by: CTSI, the Institute for Computational Health Sciences, the Institute for Human Genetics, the UCSF Office of Research, and the UCSF Medical Center Institute for Human Genetics 415-476-2470 http://humangenetics.ucsf.edu -- Patricia Babbitt Professor, Department of Bioengineering & Therapeutic Sciences and Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences Director, Graduate Program in Biological & Medical Informatics University of California, San Francisco UCSF MC 2550 Byers Hall Room508E 1700 4th Street San Francisco, CA 94158-2330, USA (CA 94158 for direct delivery by courier) Tel +1 (415) 476-3784 Fax +1 415-502-8193 Email: babbitt(a)cgl.ucsf.edu; Web http://babbittlab.ucsf.edu/ Assistant: Ms. Joslyn Polzien, +1 415-514-1214, 415-514-4861 Joslyn.Polzien(a)ucsf.edu

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[Compbio-allhands] CANCELLED- 5/15/14 Seminar with L. Mahadevan- CANCELLED
by Flowers, Nicole 12 May '14

12 May '14

Dr. L. Mahadevan regretfully has to cancel his seminar this Thursday, May 15, 2014. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546 From: <Flowers>, Office 2004 Test Drive User <nicole.flowers(a)ucsf.edu<mailto:nicole.flowers@ucsf.edu>> Date: Friday, May 9, 2014 at 1:05 PM To: CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:CCB_STUDENTS@LISTSRV.UCSF.EDU>>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:BMI_STUDENTS@LISTSRV.UCSF.EDU>>, "bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>" <bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>>, "BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>" <BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>> Subject: 5/15/14 Seminar with L. Mahadevan BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 L. Mahadevan Harvard A physical basis for morphogenesis? May 15, 2014 M. Thomson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 5/15/14 Seminar with L. Mahadevan
by Flowers, Nicole 09 May '14

09 May '14

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 L. Mahadevan Harvard A physical basis for morphogenesis? May 15, 2014 M. Thomson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Computer-Aided Drug Design Position at Roche Basel
by Brian Shoichet 09 May '14

09 May '14

FYI Brian Shoichet Professor sent from my PDA. Please excuse the grammar and spelling ---------- Forwarded message ---------- From: "Hert, Jerome" <jerome.hert(a)roche.com> Date: May 9, 2014 10:42 AM Subject: Computer-Aided Drug Design Position at Roche Basel To: "Jerome Hert" <jerome.hert(a)roche.com> Cc: Dear colleague, I would like to inform you of a new job opportunity in our Computer-Aided Drug Design (CADD) team at Roche Basel. Our team is involved in drug discovery projects with the goal of guiding the design of new pharmaceutically active molecules. We are looking for an enthusiastic and talented collaborator with industry experience. If you know of any suitable candidate, please let me know. Feel also free to forward this message to anyone who might be interested in this opening. Thank you. Link to the job offer: http://t.co/pnDzkpywo5 -- With best regards, Jérôme Hert. T: +41 6168 79639 E: jerome.hert(a)roche.com Section Head, Computer-Aided Drug Design Molecular Design and Chemical Biology F. Hoffmann-La Roche Ltd. -- *Want to know more about Roche?* Explore our marketed products - click here<http://www.roche.com/products/product-list.htm?type=divpharma&id=Pharmaceut…> Have a look at our pipeline - click here<http://www.roche.com/research_and_development/who_we_are_how_we_work/pipeli…> Take a tour of pRED - click here<http://www.youtube.com/watch?v=DVvPCOXdMI0> Hear from one of our scientists - click here<http://www.youtube.com/watch?v=E9TVJ9UZna4> Discover our Brain Shuttle approach - click here<http://www.youtube.com/watch?v=TfJBwoQNaaw>

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[Compbio-allhands] message from Adrian Roitberg
by Jacobson, Matt 06 May '14

06 May '14

For those of you who do MD simulations: An Overview of AMBER 14 – Creating the World’s Fastest MD Package Date: May 13th, 9am PST Hosted by: Prof. R. Walker, UC San Diego; Prof. A. Roitberg, University of Florida; S. Grand, Amazon Web Services Register at: http://bit.ly/AMBER14<http://www.google.com/url?q=http%3A%2F%2Fbit.ly%2FAMBER14&sa=D&sntz=1&usg=A…> This webinar will provide an overview of new GPU-accelerated features in the recently released AMBER Molecular Dynamics Software package version 14. New features include support for multi–dimensional replica exchange MD and hydrogen mass partitioning. High performance peer–to–peer support and optimizations make version 14 the fastest MD software package on commodity hardware

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Re: [Compbio-allhands] 5/8/14 Seminar with Trey Ideker
by Flowers, Nicole 02 May '14

02 May '14

Hi Everyone, Please note the subject line correction. The talk is definitely with Trey Ideker next week. Thank you, Nicole Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546 From: <Flowers>, Office 2004 Test Drive User <nicole.flowers(a)ucsf.edu<mailto:nicole.flowers@ucsf.edu>> Date: Friday, May 2, 2014 at 2:18 PM To: CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:CCB_STUDENTS@LISTSRV.UCSF.EDU>>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:BMI_STUDENTS@LISTSRV.UCSF.EDU>>, "bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>" <bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>>, "BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>" <BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>> Subject: 5/8/14 Seminar with Dorothee Kern BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Trey Ideker UCSD Siri of the Cell: What Biology Can Learn From The iPhone May 8, 2014 J. Webber, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, & CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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compbio-allhands May 2014