October 2017 - compbio-allhands@cgl.ucsf.edu

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium with Dr. Herman van Vlijmen, Nov 7th
by magdalena K 02 Nov '17

02 Nov '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, Please join us for the Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) If you would like to attend this COMP Together event, please register at the COMP website: http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38>. Poster Submission: Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together on Nov 7": johanna.jansen(a)novartis.com <mailto:johanna.jansen@novartis.com>, wei.binqing(a)gene.com <mailto:wei.binqing@gene.com>, siegfried.leung(a)circlepharma.com <mailto:siegfried.leung@circlepharma.com>, Uli.Schmitz(a)gilead.com <mailto:Uli.Schmitz@gilead.com>, xtal.ca(a)gmail.com <mailto:xtal.ca@gmail.com> We will confirm availability of a poster slot by October 31st. ———————————————————————————————————————— The COMP Together champions in your area would like to announce the following event: Speaker: Dr. Herman van Vlijmen Title: Poster session and seminar "The Use of FEP to Drive Drug Discovery at Janssen: BACE and PDE2 Inhibitor Design" Date: 2017-11-07 Time: 6:00 PM Event ID: 38 Sponsor: Novartis Location UCSF 1700 4th St. UCSF Mission Bay - GH114N San Francisco CA 94158 Note that we decided to only host one speaker, to allow plenty of time for discussion. We expect many of you have experience with FEP in drug discovery or questions about FEP in drug discovery, so we count on you to bring your questions and your experience. Schedule: 6-7 pm: Poster session (pizza and drinks provided) 7-8 pm: Seminar & discussion "The Use of FEP to Drive Drug Discovery at Janssen: BACE and PDE2 Inhibitor Design" a seminar by Herman van Vlijmen 8-9 pm: Opportunity for extended discussion on FEP or any of the posters The location is the same as the event in October, GH114N Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com <mailto:atjohanna.jansen@novartis.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>

1 1

[Compbio-allhands] 11/2/17 Seminar with Hassane Mchaourab
by Flowers, Nicole 27 Oct '17

27 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Hassane Mchaourab Vanderbilt Principles of Energy Transduction and Alternating Access of ABC Transporters November 2, 2017 D. Minor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 0

[Compbio-allhands] Fwd: Doctoral and Post-Doctoral Positions Open
by Andrej Sali 19 Oct '17

19 Oct '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Michnick Stephen <stephen.michnick(a)umontreal.ca> > Subject: Doctoral and Post-Doctoral Positions Open > Date: October 19, 2017 at 3:03:02 PM PDT > To: Michnick Stephen <stephen.michnick(a)umontreal.ca> > > Dear Colleague, > > I would appreciate if you could kindly post the attached announcement in your lab or department. > > Apologies if you received this message more than once. > > Thanks, > > Steve > ______________________________ > > Stephen Michnick Ph.D. F.R.S.C. (UK) > Professor > Canada Research Chair in Cell Architecture and Dynamics > Département de Biochimie > Université de Montreal > C.P. 6128, > Succ. Centre-Ville > Montreal, Quebec, > Canada H3C 3J7 > Bur/office: (514) 343-5849 > Fax: (514) 343-2010 > Lab: (514) 343-6111 Ext. 3205 > http://michnick.bcm.umontreal.ca > > Adresse pour/Address for FEDEX/livraison: > Département de Biochimie > Pavillon Roger-Gaudry, E-523 > Université de Montreal > 2900 Blvd. Edouard-Montpetit > Montreal, Quebec, Canada >

1 0

[Compbio-allhands] 10/26/17 Seminar with HARC Speaker Wes Sundquist
by Flowers, Nicole 19 Oct '17

19 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og [cid:image001.png@01D348E0.5A74E200] Wes Sundquist Utah Harnessing and Inhibiting the ESCRT Virus Budding Pathway October 26, 2017 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 0

[Compbio-allhands] 10/19/17 Seminar with Andre Levchenko
by Flowers, Nicole 16 Oct '17

16 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Andre Levchenko Yale Are signaling networks Rube Goldberg machines? Information processing vs. Network structure October 19, 2017 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 1

[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Jacobson, Matt 11 Oct '17

11 Oct '17

Begin forwarded message: From: Greg Lakatos <glakatos(a)zymeworks.com<mailto:glakatos@zymeworks.com>> Subject: Employment opportunity in computational protein modeling for a student or postdoc Date: October 11, 2017 at 1:56:20 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Dear Professor Jacobson, I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com<http://www.zymeworks.com/>). Thank you for your time and assistance. Sincerely, Greg Lakatos Principal Scientist and Simulations Team Lead Zymeworks Inc. Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

1 0

[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Andrej Sali 11 Oct '17

11 Oct '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Greg Lakatos <glakatos(a)zymeworks.com> > Subject: Employment opportunity in computational protein modeling for a student or postdoc > Date: October 11, 2017 at 1:59:15 PM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Professor Sali, > > I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com <http://www.zymeworks.com/>). > > Thank you for your time and assistance. > > Sincerely, > > Greg Lakatos > Principal Scientist and Simulations Team Lead > Zymeworks Inc. > > Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

1 0

[Compbio-allhands] 10/12/17 Seminar with Peng Wu
by Flowers, Nicole 10 Oct '17

10 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Peng Wu Scripps Chemoenzymatic glycan labeling; methods and applications October 12, 2017 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 0

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium, Thursday, October 5th, 6-9 pm
by magdalena K 03 Oct '17

03 Oct '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, A reminder of the upcoming event on Thursday. Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) Please register so that we can have an accurate headcount for the food order. http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37> If you want to present a poser, please follow this link (space is limited): www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> Thanks and look forward to seeing you there. ——————————————————————————————- When: Thursday, October 5th, 6-9 pm Where: UCSF Mission bay, Genentech Hall Room GH114N If you would like to present a poster please visit: www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> If you would like to register for the event only, please visit: www.tiny.cc/UCSF-Comp <http://www.tiny.cc/UCSF-Comp> 6-7pm Poster session (food and refreshments provided); 7-8pm Two talks 1) Huifen Chen (Genentech), Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project 2) Alan Cheng (Merck), Designing Beyond Rule of 5 Molecules for Tough Targets 8-9pm Poster session;

1 0

compbio-allhands October 2017