November 2020 - compbio-allhands@cgl.ucsf.edu

[Compbio-allhands] 12/3/20 BBC Seminar with Laura Kiessling, PhD
by Flowers, Nicole 30 Nov '20

30 Nov '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Laura Kiessling, Ph.D. MIT Carbohydrates as Cellular IDs December 3, 2020 D. Schwarz & J. Braxton, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

1 0

[Compbio-allhands] Fwd: open position in Gilead's modeling group
by Jacobson, Matt 21 Nov '20

21 Nov '20

— Matt Begin forwarded message: From: Vickie Tsui <Vickie.Tsui(a)gilead.com<mailto:Vickie.Tsui@gilead.com>> Subject: open position in Gilead's modeling group Date: November 17, 2020 at 1:03:43 PM PST To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt, It has been a long time since we talked, and I hope you and your family are doing well in spite of the crazy time. I wanted to let you know that our Modeling Group at Gilead has an opening currently. We are a group of 7 modelers (one just left last week – hence the open position), and we work closely with the other two groups (crystallography and informatics) in the Department of Structural Chemistry. We are parallel with the Medicinal Chemistry and Biology departments, and work closely with them on project teams. Modelers are involved from the target conception stage all the way to delivering a development candidate, and also have opportunities to be Core Team members or even to lead a project. Please feel free to pass this information on to your group, or to recommend specific people in your lab. My email isVickie.tsui(a)gilead.com<mailto:Vickie.tsui@gilead.com>, and my number is 650-534-8426. Thank you very much - I hope you take care and stay healthy. Best Regards, Vickie Vickie Tsui, Ph.D. Senior Director, Structural Chemistry Gilead Sciences, Inc. (650)653-9447

1 0

[Compbio-allhands] FW: Reminder: Gustavo Silva seminar at noon today
by Flowers, Nicole 19 Nov '20

19 Nov '20

From: "Floor, Stephen" <Stephen.Floor(a)ucsf.edu> Date: Thursday, November 19, 2020 at 6:17 AM Subject: Reminder: Gustavo Silva seminar at noon today Hi everyone, Quick reminder there's a special seminar from Gustavo Silva from Duke at noon today. His talk is titled "K63 ubiquitin and translation control during oxidative stress”. His CV and the flyer are attached. The talk zoom is at http://tiny.ucsf.edu/SilvaSeminar. Hope you can make it! Best regards, Stephen

1 0

[Compbio-allhands] Fwd: help with recrutiment
by Andrej Sali 16 Nov '20

16 Nov '20

> Dear Andrej > Please find the ad below and many thanks for helping out: > > The A*STAR Bioinformatics Institute in Singapore is a leading esearch institute connecting clinical, biological and cellular omics > data to biomolecular mechanisms through big data analysis and computational method development. We advance science and > develop innovative technology to further economic growth and improve lives. > > We are recruiting internationally recognized new group leaders with experience in biomolecular mechanism discovery through > computational data analysis of clinical, biological or cellular omics data. These could be genomics, transcriptomics, proteomics or > other omics data ideally intersecting with clinical data sets. > > Research areas include metabolic, infectious and neurological diseases including early childhood development. Experience in > applying AI and Machine learning is a plus. > > The applicant is expected to: > > 1. have solid background in Computer Science and Bioinformatics > 2. have shown abilities to combine and integrate data from multiple data sources linking data to molecular mechanisms > 3. be very versatile in understanding concepts in diverse biological fields and have the ability to use domain knowledge > effectively in the design and execution of analyses > 4. have good communication skills and fit in well in teams of very diverse background > 5. have strong publication background and academic track record > > Please contact chandra verma (chandra(a)bii.a-star.edu.sg <mailto:chandra@bii.a-star.edu.sg>) with your CV and have 3-4 letters of reference sent > > chandra >

1 0

[Compbio-allhands] Fwd: Hiring a postdoc in my group
by Jacobson, Matt 15 Nov '20

15 Nov '20

— Matt Begin forwarded message: From: Chia-en Chang <chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu>> Subject: Hiring a postdoc in my group Date: November 12, 2020 at 1:41:26 PM PST To: Chia-En Angelina Chang <chia-en.chang(a)ucr.edu<mailto:chia-en.chang@ucr.edu>> Cc: chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu> Dear friends, I'm looking for a postdoc to work in the area of ligand and protein binding kinetics and free energy. The position is available immediately and will focus on developing and applying our newly developed Binding Kinetics (BKiT) package to compute unbinding free energy profile to problems in pharmaceutical drug discovery. Ideal candidates are someone with programming experience and expertise with MD and/or other molecular mechanics simulation techniques. Please pass along this link to anyone suitable you might be aware of: https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> Hope all is well and stay safe! Thank you very much, Chia-en -- Chia-en A. Chang, Ph.D. Professor and Vice Chair of Chemistry Cooperating Faculty Member in the Department of Chemical Eng ETOX Program, GGB Program and Biochemistry program UC, Riverside Riverside, CA 92521 Ph:951-827-7263 https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h… <https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h…>

1 0

[Compbio-allhands] 11/19/20 Seminar with Gustavo Silva
by Flowers, Nicole 05 Nov '20

05 Nov '20

Seminar with Dr. Gustavo Silva Duke University K63 upbiquitin and translation control during oxidative stress Stephen Floor, Host November 19, 2020 Noon http://tiny.ucsf.edu/silvaseminar Flyer attached -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

1 0

[Compbio-allhands] Fwd: computational biology positions in the Pritykin lab at Princeton
by Andrej Sali 04 Nov '20

04 Nov '20

> Begin forwarded message: > > From: Matvei Khoroshkin <khorms21(a)gmail.com> > Subject: Fwd: computational biology positions in the Pritykin lab at Princeton > Date: November 4, 2020 at 6:27:26 PM PST > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > A friend of mine has just started as an Assistant Professor at Princeton and he is looking for people. Is there a chance you could spread the word through Compbio-allhands listserv? > Thank you! > > Best, > Matvei > > ---------- Forwarded message --------- > From: Yury Pritykin <pritykin(a)princeton.edu <mailto:pritykin@princeton.edu>> > Date: Wed, Nov 4, 2020 at 6:13 PM > Subject: computational biology positions in the Pritykin lab at Princeton > To: Matvei Khoroshkin <khorms21(a)gmail.com <mailto:khorms21@gmail.com>> > > > Computational biology positions at multiple levels are available in the Pritykin lab in the Lewis-Sigler Institute for Integrative Genomics and the Computer Science Department at Princeton University. > > The lab is broadly interested in developing computational methods for design and analysis of high-throughput functional genomic assays and perturbations, with a focus on multi-modal single-cell technologies, and applying these methods to study regulatory genomics of cell function and cell-cell interactions in vivo in close collaboration with experimental biologists, with a focus on immunology and cancer. More information is available at https://pritykin.github.io/ <https://pritykin.github.io/> > > Postdoctoral, staff scientist, internship positions are available for highly motivated individuals with strong background in computational biology and other quantitative and computational fields. (Prospective PhD students interested in working in the lab are encouraged to apply for QCB (https://lsi.princeton.edu/qcbgraduate <https://lsi.princeton.edu/qcbgraduate>) and/or COS (https://www.cs.princeton.edu/grad <https://www.cs.princeton.edu/grad>) programs at Princeton.) > > For any questions and additional details about the positions, please contact Yuri Pritykin at pritykin(a)princeton.edu <mailto:pritykin@princeton.edu> > >

1 0