October 2022 - compbio-allhands@cgl.ucsf.edu

[Compbio-allhands] 11/3/22 BBC Seminar with Mohammed AlQuraishi, PhD
by Flowers, Nicole 28 Oct '22

28 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Mohammed AlQuraishi, PhD Columbia OpenFold: Lessons learned and insights gained from rebuilding AlphaFold2 November 3, 2022 B. Orr, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/27/22 BBC Seminar with Greg Bowman, PhD
by Flowers, Nicole 21 Oct '22

21 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Greg Bowman, PhD University of Pennsylvania Protein dynamics and energy landscape design October 27, 2022 M. Jacobson, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/20/22 Clements Lecture with Daniel Asarnow, PhD
by Flowers, Nicole 17 Oct '22

17 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Biophysics Alumnus Daniel Asarnow, PhD Clements Lecture Membrane unanchored - how Dispatched releases lipid-modified Hedgehog in animal development October 20, 2022 Y. Chang, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Calendar available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series

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[Compbio-allhands] Fwd: Structural Bioinformatics position at Interline
by Andrej Sali 15 Oct '22

15 Oct '22

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[Compbio-allhands] Fwd: hi! and teaching opportunity
by Grabe, Michael 10 Oct '22

10 Oct '22

Teaching opportunity for mathy types. Michael Grabe Professor University of California, San Francisco Cardiovascular Research Institute Department of Pharmaceutical Chemistry 555 Mission Bay Blvd South, Room 452T<x-apple-data-detectors://4/1>, MC 3122 San Francisco, California 94143<x-apple-data-detectors://5/0> 415-502-2874<tel:415-502-2874> (office) 415-476-8173<tel:415-476-8173> (fax) Begin forwarded message: From: Hana Mori <hana.mori(a)usfca.edu> Date: October 8, 2022 at 3:16:43 PM PDT To: "Grabe, Michael" <Michael.Grabe(a)ucsf.edu> Subject: hi! and teaching opportunity Michael, I hope you are doing well! It's been some time. We have a teaching opportunity coming up in Fall 2023, for a colleague who will be on sabbatical. It's essentially a differential equations course with engineering applications, ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization. ZjQcmQRYFpfptBannerEnd Michael, I hope you are doing well! It's been some time. We have a teaching opportunity coming up in Fall 2023, for a colleague who will be on sabbatical. It's essentially a differential equations course with engineering applications, plus a computational lab component with Python. I'm attaching a brief course description. Do you happen to have any grad students, post-docs etc who might be interested? Please let me know! Thanks so much. Hana

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[Compbio-allhands] 10/13/22 BBC Seminar with Samara Reck-Peterson, PhD
by Flowers, Nicole 08 Oct '22

08 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Samara Reck-Peterson, PhD UCSD My squid teacher: RNA recoding of the intracellular transport machinery October 13, 2022 S. Dumont, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] 10/13/22 BBC Seminar with Sergey Ovchinnikov, PhD
by Flowers, Nicole 07 Oct '22

07 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Samara Reck-Peterson, PhD UCSD My squid teacher: RNA recoding of the intracellular transport machinery October 13, 2022 S. Dumont, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] Fwd: Computational Chemist Opening @ Photys Therapeutics
by Brian Shoichet 07 Oct '22

07 Oct '22

FYI ---------- Forwarded message --------- From: AJ Campbell <acampbell(a)photys.com> Date: Thu, Oct 6, 2022 at 12:27 PM Subject: Computational Chemist Opening @ Photys Therapeutics To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Cc: Alyssa Ozimek-Maier <aozimek(a)photys.com> Hi Dr. Shoichet, I hope you are doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join our CADD group at Photys Therapeutics and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance therapeutic projects within Photys through structure-based and ligand-based modeling approaches. Please take a look at this exciting opportunity below. Here is a link to the job description: https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723-a361-3fb7c0c78839 Here is a link to Photys Therapeutics homepage: https://www.photys.com Please feel free to pass this email along to any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our Head of Recruiting, Alyssa Ozimek-Maier, to fill in the details – she can be reached at aozimek-Maier(a)photys.com Let me know if you have any questions and many thanks! Best, AJ _____________________________________________________ *Arthur J Campbell, Ph.D. * *Senior Director, CADD* acampbell(a)photys.com <acampbell(a)photystx.com> Tel 631-767-8922 [image: signature_3585878821] -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Computational Chemist Opening @ Photys Therapeutics
by Andrej Sali 06 Oct '22

06 Oct '22

Begin forwarded message: > > From: AJ Campbell <acampbell(a)photys.com> > Subject: Computational Chemist Opening @ Photys Therapeutics > Date: October 6, 2022 at 12:32:26 PM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > Cc: Alyssa Ozimek-Maier <aozimek(a)photys.com> > > This Message Is From an Untrusted Sender > You have not previously corresponded with this sender. > Hi Dr. Sali, > > I hope you are doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join our CADD group at Photys Therapeutics and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance therapeutic projects within Photys through structure-based and ligand-based modeling approaches. Please take a look at this exciting opportunity below. > > Here is a link to the job description: > https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723-a361-3fb7c0c78839 <https://urldefense.com/v3/__https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723…> > > Here is a link to Photys Therapeutics homepage: > https://www.photys.com <https://urldefense.com/v3/__https://www.photys.com__;!!LQC6Cpwp!qRVZXErKYFw…> > > Please feel free to pass this email along to any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our Head of Recruiting, Alyssa Ozimek-Maier, to fill in the details – she can be reached at aozimek-Maier(a)photys.com <mailto:aozimek-Maier@photys.com> > > Let me know if you have any questions and many thanks! > > > Best, > AJ > > > > > _____________________________________________________ > > Arthur J Campbell, Ph.D. > Senior Director, CADD > acampbell(a)photys.com <mailto:acampbell@photystx.com> > Tel 631-767-8922 >

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[Compbio-allhands] Register for Upcoming Bioinformatic Workshops
by Zainab Yusufsada 03 Oct '22

03 Oct '22

Linear Mixed Effects Modeling Reuben Thomas October 13, 2022 1–4pm Online Join to learn about linear mixed effects modeling. Discover the motivation for the use of these models, the underlying description and assumptions behind them, example scenarios where they can be used, and the code to implement and interpret these models in R. LEARN MORE AND REGISTER <https://gladstone.org/events/linear-mixed-effects-modeling> Advanced Cytoscape Automation Alex Pico November 15, 2022 1–4pm Online Learn how Cytoscape can be integrated into programmatic workflows and pipelines using R or Python. LEARN MORE AND REGISTER <https://gladstone.zoom.us/meeting/register/tJApce6rpzgrG9LdgAughqt3XwhJp2dF…> Cordially, *Zainab Yusuf Sada* | Executive Administrator Gladstone Institute of Data Science & Biotechnology 1650 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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