- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Fwd: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College
by Andrej Sali 05 Jan '22

05 Jan '22

Sent from my iPhone Begin forwarded message: > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Date: January 5, 2022 at 12:00:52 PM PST > Subject: FW: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College > > > > > From: Sternberg, Michael J E <m.sternberg(a)imperial.ac.uk> > Sent: 05 January 2022 19:51 > To: Sternberg, Michael J E <m.sternberg(a)imperial.ac.uk> > Subject: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College > > Please advertise to suitable applicants. > > The Department of Life Sciences at Imperial College London is recruiting at any level from Lecturer to Professor in Bioinformatics and Data-intensive Biology: any aspect of data-intensive biology, e.g. utilising machine learning, including synthetic cells and/or engineered organisms, systems and synthetic biology, populations. https://www.imperial.ac.uk/jobs/description/NAT01065/lecturersenior-lecture… > > The advert is at https://www.jobs.ac.uk/job/CLV465/lecturer-senior-lecturer-reader-chair > The positions are open to outstanding candidates whose research and teaching is focused on seeking solutions for global challenges across the breadth of Life Sciences. Appointees are expected to broaden the Department’s research capabilities, while complementing our existing strengths (https://www.imperial.ac.uk/life-sciences/research/research-themes/) > > We especially welcome applicants who are female or from other under-represented groups. > > Duties and responsibilities > > Undertake original research at a high international standard in the following fields: Climate Change and Environmental Biology; Plant Sciences and Food Security; Human and Animal Health, Cell and Developmental Biology; Bioinformatics and Genomics. > Publish the results of this research in internationally recognised peer reviewed journals > Obtain external funding to support the research from Government Research Councils, Charity, Industry and other national and international funding agencies > Contribute to teaching and examination on appropriate courses of the undergraduate Biochemistry and Biological Sciences degree streams within the Department of Life Sciences > Contribute to teaching and examination on appropriate Masters courses within the Department of Life Sciences > Supervise MRes/MPhil/PhD research students > To undertake appropriate administrative tasks as directed by the Head of Department > To undertake necessary training and/or development > Full information on duties, responsibilities and criteria can be found in the Job Description. > > Essential requirements > > You must meet the following essential criteria (commensurate with the level of appointment) > > You should hold a PhD (or equivalent) in Life Sciences or a related discipline. > A developing or established, national or international reputation and expertise in your field of research > A proven track record in conducting high quality independent research, as evidenced by high quality publications in peer reviewed journals > Experience of training undergraduate and postgraduate students > Experience of preparing grant applications for submission > Experience of developing skills in leading, motivating, developing and managing the performance of colleagues > An effective communicator, conveying ideas and concepts clearly and effectively to a range of audiences through a variety of methods and media > An ability to raise significant research funding from a variety of sources > For further information about the college and benefit available to staff, please see the Further Particulars on our website. > > Candidates are required to complete an online application via our website at https://www.imperial.ac.uk/jobs/ > > Informal enquiries may be made to: Professor Anne Dell, (Head of Department; a.dell(a)imperial.ac.uk) or Professor Mark Isalan (Chair, Appointments Committee; m.isalan(a)imperial.ac.uk) > > For further information on the recruitment process please contact: Maria Monteiro, Senior Appointments Manager, email: m.monteiro(a)imperial.ac.uk Telephone: +44 (0)207 594 5498 > > Closing date: 21 January 2022 (Midnight GMT) > > The College is a proud signatory to the San-Francisco Declaration on Research Assessment (DORA), which means that in hiring and promotion decisions, we evaluate applicants on the quality of their work, not the journal impact factor where it is published. For more information, see https://www.imperial.ac.uk/research-and-innovation/about-imperial-research/… > > The College believes that the use of animals in research is vital to improve human and animal health and welfare. Animals may only be used in research programmes where their use is shown to be necessary for developing new treatments and making medical advances. Imperial is committed to ensuring that, in cases where this research is deemed essential, all animals in the College’s care are treated with full respect, and that all staff involved with this work show due consideration at every level. > > http://www.imperial.ac.uk/research-and-innovation/about-imperial-research/r… > > We are committed to equality of opportunity, to eliminating discrimination and to creating an inclusive working environment for all. We therefore encourage candidates to apply irrespective of age, disability, marriage or civil partnership status, pregnancy or maternity, race, religion and belief, gender identity, sex, or sexual orientation. We are an Athena SWAN Silver Award winner, a Disability Confident Leader and a Stonewall Diversity Champion. > > > > > > ******************************************** > Professor Michael J E Sternberg > Director Centre for Integrative Systems Biology and Bioinformatics (CISBIO) > Room 306 - Sir Ernst Chain Building > Department of Life Sciences > Imperial College London, London SW7 2AZ,UK > m.sternberg(a)imperial.ac.uk > http://www3.imperial.ac.uk/cisbio (CISBIO) > www.sbg.bio.imperial.ac.uk (Group's research) > > Tel +44 (0)20 7594 5212 > **************************************************************************** >

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[Compbio-allhands] Neomorph job opportunity
by Andrej Sali 19 Dec '21

19 Dec '21

https://careers-neomorph.icims.com/jobs/1666/data-scientist-ii%2c-molecular… <https://careers-neomorph.icims.com/jobs/1666/data-scientist-ii,-molecular-m…> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 1/6/22 BBC Seminar with Feng Zhang, PhD, Noon
by Flowers, Nicole 16 Dec '21

16 Dec '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Feng Zhang, PhD MIT Exploration of Biological Diversity January 6, 2022 P. Klauser & W. Shen, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Open Postdoc Positon
by Michael Keiser 09 Dec '21

09 Dec '21

---------- Forwarded message --------- From: Colin Smith <colin.smith(a)wesleyan.edu> Date: Thu, Dec 9, 2021 at 12:50 PM Subject: Open Postdoc Positon To: Colin Smith <colin.smith(a)wesleyan.edu> Dear Colleagues, I have a postdoc position currently open in my group to develop and apply computational techniques for refining NMR structures. I would appreciate it if you would distribute the description below to your lab members or colleagues that may know suitable candidates. Thanks and happy holidays! Colin Colin A. Smith Assistant Professor Department of Chemistry Wesleyan University +1 860 685-3274 http://smithlab.wesleyan.edu The Smith Lab at Wesleyan University has an immediate opening for a postdoc (http://smithlab.research.wesleyan.edu/joining) Our lab specializes in developing and applying methods for computationally modeling NMR data. We use these and other techniques to study dynamics of computationally designed proteins and allostery in natural proteins. We have recently developed the Kinetic Ensemble theoretical framework that allows us to rigorously model how many types of motion affect the Nuclear Overhauser Effect (NOE), which is foundational to NMR-based structure determination. We have shown that approximations made in traditional NOE-based structure determination can result in significant underfitting of the data. We would like to now extend this methodology to enable direct refinement of highly accurate protein ensembles using leading biomolecular modeling software packages. We are seeking an individual with programming experience in a compiled language like C++ who will create and apply next-generation NOE restraints using the Kinetic Ensemble methodology. Together with advanced NOE peak integration using our FitNMR software package, the overall goal is to develop a fully quantitative pipeline to generate the most accurate solution ensembles of proteins to date. We hope this will advance the field of NMR structure determination and yield insights into how the solution state dynamics of proteins at the atomic level differ from those found in crystals. Suitable candidates are encouraged to contact Prof. Colin Smith ( colin.smith(a)wesleyan.edu) to apply and/or discuss this opportunity. Individuals having demonstrated experience with high-performance programming in the context of a large existing codebase are especially well-suited for this position. -- Michael J Keiser, PhD Associate Professor, UCSF p/1-415-886-7651 calendly.com/mjke

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[Compbio-allhands] Fwd: Requesting your help in filling entry level Comp. Chem. Position
by Brian Shoichet 30 Nov '21

30 Nov '21

FYI ---------- Forwarded message --------- From: Suresh Singh <suresh.singh(a)eocystx.com> Date: Mon, Nov 29, 2021 at 5:22 PM Subject: Requesting your help in filling entry level Comp. Chem. Position To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Hi Brian, I hope you are doing well. Since September I have been heading the Computation group at EoCys Therapeutics, a stealth biotech start-up based in Cambridge, MA. We are funded with seed funding of $30 MM from Atlas Ventures and Access Biotechnology funds. We are 15-person company seeking to grow in the coming year to build our technology platform and the pipeline. Our technology platform comprises ultra-deep proteomics, bioinformatics, structural informatics, and machine learning. All our drug discovery targets are structurally enabled, and it plays a major part in our design process. I will appreciate you passing the job description to members of your group as well as other comp. chem. groups at UCSF. Thanks for your help in this effort. Best, Suresh -------------------------------------------------------------- Suresh B Singh Senior Vice President Computational Science & Structural Biology EoCys Therapeutics suresh.singh(a)eocystx.com 732-491-7470 -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Job Opportunity: Associate Scientific Editor – Cell Chemical Biology and Structure
by Andrej Sali 21 Nov '21

21 Nov '21

> Begin forwarded message: > > From: "Dey, Mishtu (ELS-CMA)" <deym(a)science.regn.net> > Subject: Job Opportunity: Associate Scientific Editor – Cell Chemical Biology and Structure > Date: November 19, 2021 at 6:59:21 AM PST > To: Andrej Sali <sali(a)salilab.org>, "Lima, Christopher/Sloan Kettering Institute" <LimaC(a)MSKCC.ORG> > > Hi Chris and Andrej, > > I hope you are doing well. > > I’d like to seek your help in passing around the word about a new opportunity at Cell Press, working as an editor for Cell Chemical Biology and Structure. Any life sciences PhD interested in being a scientific editor can apply. No previous editorial work is required with a preference for someone with chemical biology or structural biology background. > > We have a job posting <https://relx.wd3.myworkdayjobs.com/ElsevierJobs/job/London/Associate-Scient…> (also appended below), and it would be great if you could circulate it to various labs at UCSF/Sloan. If there is a trainee in your labs who might be interested, encourage them to apply. Please feel free to let me know if you need any specific information or, have any questions/concerns. > > Many thanks, > Mishtu > > > Mishtu Dey, Ph.D. | Editor-in-Chief | Cell Chemical Biology <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.cell.…> | > Cell Press <https://nam03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.cell.c…> | Cambridge, MA, USA | Tel: +1-508-239-8606 | @DeyMishtu <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.c…> | @CellChemBiol <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.c…> | > > > > > > Associate Scientific Editor – Cell Chemical Biology & Structure > Cell Chemical Biology and Structure are seeking a Scientific Editor to help publish the best research across both areas. We are looking for candidates with strong communication skills and research experience in one or more of the topics published in the journals - see our Aims and Scope - https://www.cell.com/structure/home <https://www.cell.com/structure/home> and https://www.cell.com/cell-chemical-biology/home <https://www.cell.com/cell-chemical-biology/home>. > The core responsibilities of this position include: > Assessing submitted research papers > Overseeing the peer review process > Recruiting exciting research studies and review material > Driving our front matter and diversity initiatives > Contribute to the ongoing development of both journals > Establishing relationships with researchers > Representing both journal and Cell Press at scientific meetings and visits to research institutions > Building effective working relationships with colleagues across Cell Press and beyond > Contributing to broader Cell Press initiatives to shape the future of science communication > > Qualifications: > Broad interests, love of science, and desire to learn. As an editor, you will need to understand the diverse science covered by Cell family of journals, and you will need to appreciate the issues and questions that drive different fields. > A talent for clear communication. Good editors help authors make their message clear, concise, and compelling, so readers know why the science is important and how it will impact their work. > Interest in digital communication and publishing trends. > Creativity, willingness to experiment, with and desire to improve. > The ability to organize, prioritize, and focus, and meet deadlines consistently is critical. > Great interpersonal skills. Collaboration and networking are core aspects of the job. > The ability to work successfully both independently and in a diverse global team. > PhD in a relevant discipline. > Applicants with a professional background such as running a research group or working in the biotech industry are encouraged to apply. > This is a full-time in-house editorial position based in our offices in either the Netherlands, UK, or US (London/Oxford UK, Amsterdam NL, or Cambridge, MA US ). We are also open to candidates who are eligible to be based in our China office locations (e.g. Shanghai/Beijing/ShenzhenChina). Cell Press offers an attractive salary and benefits package and a stimulating working environment. > To apply, please submit your CV and a cover letter indicating your reasons for being interesting in this role. Applications will be held in the strictest of confidence. > > About Cell Press: > Cell Press, which is part of Elsevier, is a dynamic, interactive, diverse, and creative scientific community located in the heart of Cambridge, MA, and with additional offices in the UK, the Netherlands, and China. With 100+ PhD scientists, a forward-looking and experienced editorial support and digital production team, a results-driven marketing and press office, and a vibrant commercial partnership group, Cell Press aims to facilitate effective scientific exchange and is a leader in communicating the most important scientific findings. > ----------------------------------------------------------------------- > Elsevier is an equal opportunity employer: qualified applicants are considered for and treated during employment without regard to race, color, creed, religion, sex, national origin, citizenship status, disability status, protected veteran status, age, marital status, sexual orientation, gender identity, genetic information, or any other characteristic protected by law. If a qualified individual with a disability or disabled veteran needs a reasonable accommodation to use or access our online system, that individual should please contact accommodations(a)relx.comor <mailto:accommodations@relx.comor> if you are based in the US you may also contact us on 1.855.833.5120.

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[Compbio-allhands] 12/2/21 BBC Seminar with Olga Boudker, PhD, Noon
by Flowers, Nicole 19 Nov '21

19 Nov '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Olga Boudker, PhD Weill Cornell Substrate discrimination and transport determinants in plasma membrane glutamate transporters December 2, 2021 R. Edwards & D. Minor, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f ________________________________________________________________________________ Microsoft Teams meeting Join on your computer or mobile app Click here to join the meeting<https://urldefense.com/v3/__https://teams.microsoft.com/l/meetup-join/19*3a… > Learn More<https://urldefense.com/v3/__https://aka.ms/JoinTeamsMeeting__;!!LQC6Cpwp!_h… > | Meeting options<https://urldefense.com/v3/__https://teams.microsoft.com/meetingOptions/?org… > ________________________________________________________________________________

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[Compbio-allhands] Fwd: Elmlund, new lab
by Andrej Sali 04 Nov '21

04 Nov '21

> Begin forwarded message: > > From: "Elmlund, Hans (NIH/NCI) [E]" <hans.elmlund(a)nih.gov> > Subject: Elmlund, new lab > Date: November 3, 2021 at 11:07:39 AM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Andrej: > > I hope this email finds you well. I’m writing to you because I am interested in recruiting computationally inclined post-doctoral students that are keen to apply their skills in the structural biology and nanoscience areas. I’m starting up a new computational electron microscopy (EM) lab at the National Institutes of Health at the Center for Structural Biology (CSB), Frederick, MD: > > https://ccr.cancer.gov/staff-directory/hans-elmlund <https://ccr.cancer.gov/staff-directory/hans-elmlund> > > My lab will continue to develop algorithms for liquid cell EM of nanocrystals and design tools for stream single-particle cryo-EM analysis in real time as well as pursuing computational methods development for integrative structural biology. > > Broadly, research within the CSB seeks to either directly advance our understanding of cancer mechanisms or to develop structural methodologies that may later be applied to answer cancer-related questions. A core objective is to develop and apply new tools for molecular characterization using novel biophysical and biochemical techniques including cryo-EM, NMR, X-ray diffraction and scattering methods. > > The cryo-EM kit that we currently have in-place (and running) at the Frederick site: > > Titan G4 with pre and post GIF Falcon 4 (to be upgraded to 4i early spring), Selectris filter > Arctica with BioQuantum and K3 > Aquilos II (with online fluorescent scope to be mounted 2022) > 120 kV screening instrument > Leicabot > 2 x Vitrobots > Chameleon > Extensive HPC resources for real time streaming of data > > If you could please forward my contact details to prospective fellows, I would greatly appreciate it and I’m happy to provide additional information. The NIH just declared that non-mission critical travel is now allowed (subject to approval) so I hope we can meet in person soon. > > With best regards > > -- > HANS ELMLUND PhD > Senior Investigator > > National Institutes of Health > National Cancer Institute—Frederick Campus > 1050 Boyles St, Fredrick MD 21702 > United States of America > > T: +1(240)739-9079 > E: hans.elmlund(a)nih.gov <mailto:hans.elmlund@nih.gov> > simplecryoem.com <http://simplecryoem.com/>

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[Compbio-allhands] 11/4/21 Clements Lecture with with Marco Mravic, PhD
by Flowers, Nicole 29 Oct '21

29 Oct '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Biophysics Alumnus Marco Mravic Clements Lecture Membrane Protein Design: biophysical principles and chemical biology tools November 4, 2021 B. DeGrado, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry.

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[Compbio-allhands] Fwd: Faculty search in quantitative virology
by Andrej Sali 29 Oct '21

29 Oct '21

Sent from my iPad Begin forwarded message: > From: Frank Alber <falber(a)g.ucla.edu> > Date: October 28, 2021 at 9:48:10 PM PDT > To: Andrej Sali <sali(a)salilab.org> > Subject: Faculty search in quantitative virology > > Dear Andrej, > > I hope things are going well. > I wanted to let you know that our department has a faculty search for a position in Quantitative Virology. It could be fully computational or partial computational/experimental. I just wanted to let you know in case you know some people who might be interested. > So I attach the search description and also a pdf of the description here in this email. > > Best wishes, > Frank > > > ——————————————------------------------------------------------------------------------------------ > > View this position online: https://recruit.apo.ucla.edu/JPF06810 > Apply now: https://recruit.apo.ucla.edu/JPF06810/apply > > Tenure Track Assistant or Associate Professor in Quantitative Virology > > POSITION OVERVIEW > Position title: Assistant or Associate Professor > > APPLICATION WINDOW > Open date: October 5th, 2021 > Next review date: Monday, Nov 8, 2021 at 11:59pm (Pacific Time) > Apply by this date to ensure full consideration by the committee. > Final date: Wednesday, Nov 17, 2021 at 11:59pm (Pacific Time) > Applications will continue to be accepted until this date, but those received after the review date will only be considered if the position has not yet been filled. > > POSITION DESCRIPTION > Tenure Track Assistant or Associate Professor in Quantitative Virology > The Department of Microbiology, Immunology & Molecular Genetics (MIMG) and the Institute for Quantitative and Computational > The ideal candidates will lead a creative and impactful research program in quantitative virology and/or pathogen-immune interactions and/or viral pathogenesis. The candidate will employ cutting edge theoretical approaches, computational approaches of data analysis, and/or dynamical modeling. The successful candidate may seek to have a wet lab for data generation or leverage public or collaborator data. > UCLA hosts thriving communities of microbial, cell, and systems biology, virology and immunology, computational biologists, and is well- > The successful candidate will contribute to our undergraduate and graduate teaching missions in the MIMG major, and in the Computational > Questions regarding the position should be sent to Frank Alber at falber(a)g.ucla.edu. The following materials should be submitted online: > > Submit materials to https://recruit.apo.ucla.edu/analyst/recruitments/JPF06810/details . > Application review will begin on November 8, 2021. > As UCLA is California's largest university with a diverse student body, we encourage applications from women, minorities, and individuals with a commitment to mentoring students from backgrounds traditionally under-represented in the sciences. > > Department: https://www.mimg.ucla.edu/ > > QUALIFICATIONS > Basic qualifications (required at time of application) > PhD or equivalent degree in computational, molecular, cell or systems biology, virology, genetics, ecology and evolutionary biology, biochemistry, bioengineering, physics, mathematics, or computer science or related fields. > > APPLICATION REQUIREMENTS > MIMG/QCBio 2021-22 > Generated Oct 5, 2021 at 3:34pm Page 1 > MIMG/QCBio 2021-22 (JPF06810) > Document requirements > Curriculum Vitae - Your most recently updated C.V. > Cover Letter > Statement of Research - Including past accomplishments and future plans Statement of Teaching > Statement on Contributions to Equity, Diversity, and Inclusion - An EDI Statement describes a faculty candidate’s past, present, and future (planned) contributions to equity, diversity, and inclusion. To learn more about how UCLA thinks about contributions to equity, diversity, and inclusion, please review our Sample Guidance for Candidates and related EDI Statement FAQ document. > Notable Pieces of Work - Up to three key papers exemplifying the applicant’s research accomplishments > Reference requirements > 3 letters of reference required > Please submit at least three letters of recommendation > > Apply link: https://recruit.apo.ucla.edu/JPF06810 > Help contact: cvonderach(a)mednet.ucla.edu > > CAMPUS INFORMATION > The University of California is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age or protected veteran status. For the complete University of California nondiscrimination and affirmative action policy, see: UC Nondiscrimination & Affirmative Action Policy. > > JOB LOCATION > Los Angeles, CA > > > > >

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[Compbio-allhands] CORRECTION: 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 25 Oct '21

25 Oct '21

This week’s seminar with Jeremy England, PhD is indeed on: THURSDAY, OCTOBER 28, 2021 NOON An updated outlook invitation was just sent as well. BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Canceled: 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 25 Oct '21

25 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 22 Oct '21

22 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Looking for Data Scientists
by Andrej Sali 12 Oct '21

12 Oct '21

see some job opportunities for data scientists. -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Patrick Weinkam <pweinkam(a)gmail.com> > Subject: Re: Looking for Data Scientists > Date: October 11, 2021 at 4:15:56 PM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > Thanks for helping to post the job list. See attached or the link below for the same job description: > > https://www.linkedin.com/jobs/view/2733281748/ <https://www.linkedin.com/jobs/view/2733281748/> > We anticipate growing and hiring consistently so if you do know someone interesting in going into data science, please do not hesitate to send them my way. > > Thanks! > > Pat > > >

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[Compbio-allhands] 10/14/21 BBC Seminar with Carlos Bustamante, PhD, Noon
by Flowers, Nicole 07 Oct '21

07 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Carlos Bustamante, PhD UC Berkeley Division of Labor and Mechanism of Translocation of a Ring ATPase October 14, 2021 M. Jaime Garza, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/7/21 BBC Seminar with Chloe-Agathe Azencott, PhD, 9 AM
by Flowers, Nicole 07 Oct '21

07 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays Zoom: http://tiny.ucsf.edu/pUYmCK *please do not share this link outside of UCSF Chloe-Agathe Azencott, PhD CBIO Mines ParisTech, Institut Curie, INSERM Network-guided genome-wide association studies October 7, 2021 **9 AM** C. Stephens, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: MSK Tenure-Track Faculty Position in Chemistry or Chemical Biology
by Tom Ferrin 05 Oct '21

05 Oct '21

-------- Forwarded Message -------- Subject: MSK Tenure-Track Faculty Position in Chemistry or Chemical Biology Date: Thu, 30 Sep 2021 21:01:52 +0000 From: marquezj(a)mskcc.org To: tef(a)cgl.ucsf.edu ThomasFerrin Professor Chemistry and Chemical Biology University of California, San Francisco San Francisco, CA 94158 *Re: Tenure-Track Faculty Position in Chemistry or Chemical Biology* Dear Professor Ferrin, I write to request your assistance in identifying innovative individuals for a tenure-track position in the Chemical Biology Program at the Memorial Sloan Kettering Cancer Center (MSK). We seek candidates with strong research accomplishments in chemical biology or organic chemistry and interests in bringing chemical approaches to bear upon problems at the interface with biomedical research, including basic and translational research and across all disease areas. Women and candidates from underrepresented groups are especially encouraged to apply. MSK has a rich history in chemical research spanning over 70 years, and we are continuing our recent expansion in this area. We provide a unique and collaborative scientific environment, exceptional research facilities and resources, and generous startup packages. Faculty are eligible to hold appointments in and to recruit students from multiple outstanding graduate programs, including the Tri-Institutional PhD Program in Chemical Biology, Tri-Institutional MD-PhD Program, Gerstner Sloan Kettering Graduate School of Biomedical Sciences, and Weill Cornell Graduate School of Medical Sciences. The application deadline is*October 15, 2021*. Interested candidates should visithttps://facultysearch.ski.edu <https://facultysearch.ski.edu/>to access the online application and to obtain important information on required application materials and deadlines. Applicants must have a PhD degree in chemistry, biochemistry, chemical biology, or a closely related discipline, and a strong track record of scientific achievement. A copy of the search advertisement is below. If you have anyone you believe would be interested in applying or if there is someone you would like to recommend, please feel free to contact me directly. Sincerely, *Derek S. Tan, PhD* Chairman, Member, and Tri-Institutional Professor Chemical Biology Program *Memorial Sloan Kettering Cancer Center* 1275 York Ave., New York, NY 10065 T: 646-888-2234 • F: 646-422-0416 • tand(a)mskcc.org • www.dstan.org Director, Tri-Institutional PhD Program in Chemical Biology T: 212-746-5267 • F: 212-746-8992 • chembio.triiprograms.org ===================================================================== Please note that this e-mail and any files transmitted from Memorial Sloan Kettering Cancer Center may be privileged, confidential, and protected from disclosure under applicable law. If the reader of this message is not the intended recipient, or an employee or agent responsible for delivering this message to the intended recipient, you are hereby notified that any reading, dissemination, distribution, copying, or other use of this communication or any of its attachments is strictly prohibited. If you have received this communication in error, please notify the sender immediately by replying to this message and deleting this message, any attachments, and all copies and backups from your computer.

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[Compbio-allhands] structural biology position at Vir Bio Inc
by Andrej Sali 10 Sep '21

10 Sep '21

https://jobs.lever.co/vir/fdbfc8f1-fe73-49e1-a2b2-dee1b6a03554 <https://jobs.lever.co/vir/fdbfc8f1-fe73-49e1-a2b2-dee1b6a03554> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Positions in Sweden
by Andrej Sali 22 Aug '21

22 Aug '21

> Begin forwarded message: > > From: Arne Elofsson <arne(a)bioinfo.se> > Subject: Positions in Sweden > Date: August 22, 2021 at 12:59:50 AM PDT > To: undisclosed-recipients:; > > Dear friend > > As you might have heard we have just started an extremely well-funded program in data-driven life science in Sweden (total budget $300M). Now we are recruiting the first 20 (7 in Stockholm) assistant professors. These tenure-track positions are really well-funded ($2M in startup - priority access to a Nvidia Superpod etc). If you know of any good postdocs that you think might be interested could you send me their names so that I can contact them? The strict deadline is Sep 5 I think and one caveat is that there is a strict limit that the candidates should be maximum five years from their PhD. More information can be found here: https://www.scilifelab.se/data-driven/fellows/ <https://www.scilifelab.se/data-driven/fellows/> > > Yours > > Arne >

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[Compbio-allhands] Fwd: Rockefeller University Faculty Open Search 2021
by Andrej Sali 19 Aug '21

19 Aug '21

> Begin forwarded message: > > From: Nathaniel Heintz <heintz(a)rockefeller.edu> > Subject: FW: Rockefeller University Faculty Open Search 2021 > Date: August 19, 2021 at 6:33:00 AM PDT > To: Nathaniel Heintz <heintz(a)rockefeller.edu>, Kasia Turbek <kturbek(a)rockefeller.edu>, Jill Benz <benzj(a)rockefeller.edu> > > Dear Colleague, > > Under the leadership of our President, Richard P. Lifton, The Rockefeller University continues its effort to recruit outstanding new Heads of Laboratory. The right candidate will have a creative and rigorous research program and will be highly interactive with our small but exceptional research community. In return, The Rockefeller University is committed to fostering outstanding scientists through a superb research environment and resources to promote innovative research. > > We are writing to seek your help in identifying highly motivated and innovative scientists working in any of the following major areas of research: > > - Biochemistry, Biophysics, Chemical Biology, and Structural Biology > - Cancer Biology > - Cell Biology > - Genetics and Genomics > - Neurosciences and Behavior > - Immunology, Virology, and Microbiology > - Organismal Biology and Evolution > - Mechanisms of Human Disease > - Physical, Mathematical, and Computational Biology > - Stem Cells, Development, Regeneration, and Aging > > The Search Committee would appreciate greatly your assistance in encouraging exceptional candidates to apply. We seek tenure-track faculty candidates possessing either a Ph.D. degree, an M.D. degree, or both. We also welcome applications from tenured scientists at an early stage of their career. Applications are being accepted electronically through our Online Application System at: http://oas.rockefeller.edu <http://oas.rockefeller.edu/>. Our application deadline is October 1, 2021. > > We would also be grateful for your suggestions of specific candidates we should consider. We are especially interested in the names of women or under-represented minority candidates whom we might contact and encourage to apply. Please forward any recommendations you may have to: facultysearch(a)rockefeller.edu. <x-msg://39/facultysearch@rockefeller.edu.> > > Further information regarding our current search can be found in the attached advertisements and at http://www.rockefeller.edu/facultysearch. <http://www.rockefeller.edu/facultysearch.> > > We very much appreciate your help with this important effort. > > Best regards, > > Nathaniel Heintz > Chair, 2021-2022 Faculty Open Search Committee > James and Marilyn Simons Professor > Howard Hughes Medical Institute > The Rockefeller University > >

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[Compbio-allhands] Fwd: Opening for computational chemist in my group
by Brian Shoichet 14 Aug '21

14 Aug '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Patrick Lee <plee(a)mazetx.com> Date: Fri, Aug 13, 2021, 3:24 PM Subject: Opening for computational chemist in my group To: Brian Shoichet <bshoichet(a)gmail.com>, John Irwin <jir322(a)gmail.com> Hello Brian and John, Hope you’ve been well. As an FYI I have an entry level computational chemist opening at Maze so if you know of any qualified individuals who may be interested, please feel free to have them e-mail me directly. The job should be posted on our website (https://mazetx.com/careers/) next week. Patrick This email and any attachments may contain CONFIDENTIAL or PRIVILEGED information and is a private communication between the intended addressee and Maze Therapeutics, Inc. If you have received this email in error, reading, copying, using or disclosing its contents to others is prohibited. Please notify us of the delivery error by replying to this message and then delete it from your system. Thank you.

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[Compbio-allhands] Fwd: EMBL Cell Biology & Biophysics Group Leader recruitment 2021
by Andrej Sali 06 Aug '21

06 Aug '21

> Begin forwarded message: > > From: Jan Ellenberg <jan.ellenberg(a)embl.de> > Subject: EMBL Cell Biology & Biophysics Group Leader recruitment 2021 > Date: August 6, 2021 at 3:45:46 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > I would like to draw your attention to the opening for two group leader positions in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry, engineering or mathematics who want to pursue original and interdisciplinary research in cutting-edge molecular cell biology or imaging technology development. > > Regarding research topic, our call is broad and not limited to a particular topic. In the area of cell biology, the candidate’s research should aim at elucidating the molecular mechanism of an important biological function at the cellular level and we would for example also welcome applicants that plan to work in unusual, including marine and bacterial, model systems, or that take a theoretical approach to model dynamic cell biological processes. In the area of imaging technology, we would for example welcome applicants that develop novel microscopy technologies to probe the molecular or physical structure and function of cells. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and not too rarely even immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > > Jan > > Dr. Jan Ellenberg > Head, Cell Biology and Biophysics Unit > > Head EMBL Imaging Centre > > European Molecular Biology Laboratory (EMBL) > > Meyerhofstr. 1 > > D-69117 Heidelberg > > Germany > > T +49-6221-387-8391 > > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.org/research/units/cell-biology-biophysics/ <http://www.embl.org/research/units/cell-biology-biophysics/> > www.embl.org/about/info/imaging-centre/ <http://www.embl.org/about/info/imaging-centre/> > > > > > > > > > > > >

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[Compbio-allhands] Fwd: Computational Chemist I Opening @ Broad Institute of MIT & Harvard
by Brian Shoichet 19 Jul '21

19 Jul '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: AJ Campbell <arthurc(a)broadinstitute.org> Date: Mon, Jul 19, 2021, 1:49 PM Subject: Computational Chemist I Opening @ Broad Institute of MIT & Harvard To: Brian Shoichet <shoichet(a)cgl.ucsf.edu> Hi Dr. Shoichet, I hope you're doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join the Center for the Development of Therapeutics (CDoT) CADD group at the Broad Institute and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance current therapeutic projects within CDoT through structure-based and ligand-based modeling approaches. Please take a look at the exciting pipeline of projects we are working on: Here are the links to the job description: https://broadinstitute.wd1.myworkdayjobs.com/broadinstitute_cdot/job/Cambri… Please let me know if you have any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our recruiter, Aruna Mandulapalli, to fill in the details - she can be reached at amandula(a)broadinstitute.org Let me know if you have any questions and many thanks! Best, AJ *Working at CDoT <https://www.broadinstitute.org/center-development-therapeutics/working-cdot> - Broad Institute of MIT & Harvard* *Broadminded Blog:* A drug discovery scientist discusses the Broad Institute’s unique role in drug development <https://www.broadinstitute.org/blog/whyiscience-qa-drug-discovery-scientist…> *CDoT Publications <https://www.broadinstitute.org/publications-list/1146>* *- CDoT's scientific leadership has an average of 15 years of Drug Discovery career experience and have advanced 32 compounds into the clinic. Together, they lead an organization of 80 research scientists and associates, 60% of whom have doctorates in relevant fields or areas of expertise.* *Arthur J Campbell, Ph.D.* Group Leader, Senior Computational Chemist I _________________________________________ *The Broad Institute of MIT and Harvard* Center for the Development of Therapeutics Stanley Center for Psychiatric Research 415 Main Street, Cambridge, MA 02142 Tel 1-617-714-7372 Email ArthurC(a)BroadInstitute.org www.BroadInstitute.org

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[Compbio-allhands] Fwd: Job openings for "Assistant professor in data-driven cell and molecular biology"
by Andrej Sali 17 Jun '21

17 Jun '21

Sent from my iPhone Begin forwarded message: > From: Arne Elofsson <arne(a)bioinfo.se> > Date: June 17, 2021 at 2:13:10 PM GMT+2 > To: socbin(a)socbin.org, 3d-bioinfo-all-contacts <3d-bioinfo-all-contacts(a)live.ucl.ac.uk>, 3D-BioInfo-SC <3d-bioinfo-sc(a)live.ucl.ac.uk> > Subject: Job openings for "Assistant professor in data-driven cell and molecular biology" > > > > Dear colleagues > > Sorry for disturbing you. > > We have a number of extremely good positions in Sweden with deadlines in the fall. They are tenure track and funded by a new initiative by the Wallenberg foundation with approximately $2M in startup funding. Additional funding will be available to apply for. The main rule is that you have to be within 5 years from your PhD (with additional time allowed for parental leave, military service etc). In total there are 20 positions, with approximately 5 of these relevant to our community (the others are in Precision medicine, evolution and biodiversity, epidemiology and infection biology) > > The title of all position is "Assistant professor in data-driven cell and molecular biology", but a slight variation on the descriptions exist (but in principle, you could apply for all (although obviously the best in Stockholm University as I can get you as my colleague). > > A general link for all positions can be found here: https://www.scilifelab.se/data-driven/fellows/ > > Here are links to the five positions > Stockholm University (2 positions) > https://www.su.se/english/about-the-university/work-at-su/available-jobs?rm… > KTH: "A specific focus is the development of methods that take a quantitative approach to cell and molecular biology with potential to give new insights of biophysical relevance." > https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:406593/wher… > Chalmers: > https://www.chalmers.se/en/about-chalmers/Working-at-Chalmers/Vacancies/Pag… > Linköping University > https://liu.se/jobba-pa-liu/lediga-jobb/ (link not available yet) > > > I would appreciate that if you could spread the information to any suitable candidate, and if anyone wants to contact me please ask them to do so. > > Yours > > Arne > > > ----------------------------------------- > Arne Elofsson Science for Life Laboratory > Tel:+46-(0)70 695 1045 Stockholm University > http://bioinfo.se/ Box 1031, > Email: arne(a)bioinfo.se 17121 Solna, Sweden > Twitter: https://twitter.com/arneelof > Scholar: http://scholar.google.se/citations?user=s3OCM3AAAAAJ > ORCID: 0000-0002-7115-9751

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[Compbio-allhands] Fwd: Life, Job
by Brian Shoichet 15 Jun '21

15 Jun '21

FYI. I think highly of this company, fwiw. ---------- Forwarded message --------- From: Jonathan Mason <Jonathan.Mason(a)soseiheptares.com> Date: Mon, Jun 14, 2021 at 2:25 PM Subject: Fwd: Life, Job To: Brian Shoichet <bshoichet(a)gmail.com> Hi Brian, I hope that all is well with you and things are going well with the group. Heptares has more comp chem positions open. Please let me know if you know of anyone with GPCR experience who could be suitable and let anyone who could be interested know. Hoping to see you again soon! Thanks and Best Wishes Jon Computational Chemist position https://cezanneondemand.intervieweb.it/heptares/jobs/computational_chemist_… Jonathan Mason PhD CChem FRSC Senior Research Fellow d +44 (0)1223 949214 m +44 (0)7540 689784 e *Jonathan.Mason(a)SoseiHeptares.com* <Jonathan.Mason(a)soseiheptares.com> <https://www.soseiheptares.com/> Steinmetz Building Granta Park Cambridge CB21 6DG United Kingdom The information in this e-mail is confidential and may be legally privileged. It is intended for the exclusive attention of the addressee stated above and should not be copied or disclosed to any other. If you have received this transmission in error, please contact the sender immediately, make no use of its contents and delete this message from your system. ontact and registered office address: Heptares Therapeutics Limited, Granta Park, Great Abington, Cambridge, CB21 6DG. Company No: 06267989. -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 6/3/21 BBC Seminar with Vincent Tagliabracci, PhD- FINAL SEMINAR
by Flowers, Nicole 28 May '21

28 May '21

Final seminar of the year BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vincent Tagliabracci, PhD UT Southwestern Expanding the kinome June 3, 2021 N. Jura, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 5/20/21 BBC Seminar with Wes Sundquist, PhD
by Flowers, Nicole 12 May '21

12 May '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… HARC Lecture Wes Sundquist, PhD University of Utah Structure and Function of the HIV Capsid May 20, 2021 N. Krogan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 5/13/21 Seminar with Lawrence Hamann
by Flowers, Nicole 06 May '21

06 May '21

Seminar with Dr. Lawrence Hamann Takeda Pharmaceuticals EXPANDING THE DRUGGABLE GENOME THROUGH CEREBLON-MEDIATED PROTEIN DEGRADATION Danica Galonic Fujimori, Host May 13, 2021 Noon https://urldefense.com/v3/__https://ucsf.zoom.us/j/93580865207?pwd=dlU3MXpO… Meeting ID: 935 8086 5207 Password 459156 Flyer attached Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 5/6/21 BBC Seminar with Helen Blackwell, PhD
by Flowers, Nicole 30 Apr '21

30 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Helen Blackwell, PhD University of Wisconsin-Madison Chemical Interventions into Bacterial Cell-Cell Signaling May 6, 2021 W. Shen, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/29/21 BBC Seminar with Demet Araç, PhD
by Flowers, Nicole 23 Apr '21

23 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Demet Araç, PhD University of Chicago Cellular Communication via Adhesion in the Nervous System April 29, 2021 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Fwd: Open position in our Lab, please distribute
by Andrej Sali 19 Apr '21

19 Apr '21

Begin forwarded message: > > From: Marc Marti-Renom <martirenom(a)cnag.crg.eu> > Subject: Open position in our Lab, please distribute > Date: April 19, 2021 at 8:19:03 AM PDT > To: "Marc A. Marti-Renom" <martirenom(a)cnag.crg.eu> > > Dear friends and colleagues, > > Apologies for the mass email. I would love if you can distribute this advertisement along your colleagues. > > We are looking for a Postdoctoral fellow who would like to join our lab in Barcelona to work on spatial transcriptomics and cancer as part of a larger interdisciplinary team. > > You can read more details here: https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct… <https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct…> > > Thanks and stay safe! > Marc > ... > Marc A. Marti-Renom, ICREA Research Professor > Structural Genomics Group Leader > Centre Nacional d’Anàlisi Genòmica - Centre de Regulació Genòmica (CNAG-CRG) > The Barcelona Institute of Science and Technology (BIST) > Parc Científic de Barcelona – Torre I (10th floor) > Baldiri Reixac, 4, 08028 Barcelona > Tel +34 9340 33743 > Email: martirenom(a)cnag.crg.eu <mailto:martirenom@cnag.crg.eu> · martirenom(a)gmail.com <mailto:martirenom@gmail.com> > Web: http://marciuslab.org <http://marciuslab.org/> · http://cnag.crg.eu <http://cnag.crg.eu/> · http://crg.cat <http://crg.cat/> > > *** Consider the environment. Print responsibly. *** > > > > > >

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host This lecture will NOT be recorded as unpublished data will be shared. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/15/21 BBC Seminar with Lisa Jones, PhD
by Flowers, Nicole 09 Apr '21

09 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Lisa Jones, Ph.D. University of Maryland In-Cell Protein Footprinting Coupled with Mass Spectrometry for Proteome-Wide Structural Biology April 15, 2021 S. Naing & S. Thompson, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/1/21 BBC Seminar with Eugene Valkov, PhD
by Flowers, Nicole 29 Mar '21

29 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Eugene Valkov, Ph.D. NIH Biochemical Studies of Messenger RNA Degradation April 1, 2021 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Fwd: Post-doc opportunity: Machine learning for biology (Biancalani lab)
by Michael Keiser 16 Mar '21

16 Mar '21

---------- Forwarded message --------- From: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Date: Sat, Mar 13, 2021 at 2:08 PM Subject: Post-doc opportunity: Machine learning for biology (Biancalani lab) To: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Hi, I am looking for a postdoc for my lab in Genentech (in the beautiful San Francisco, CA), and I would appreciate it if you could circulate the opening to potentially interested candidates. The position is for four years and includes competitive salary (>$80k gross) and benefits - you can find more details here <https://www.gene.com/careers/university-and-early-career/postdocs>. Broadly speaking, in my lab we leverage AI methods to understand -omic data, with focus on scRNA-seq, *ISH, and spatial transcriptomics. Some topics of interest include identifying cell cell communication mechanisms, revealing spatial co-localization of cell types or gene programs, and predicting the outcome of perturbation assays. We address these topics using modern machine learning methods, such as training a convolutional neural network for extracting features from images, learning a latent representation for harmonizing different data modalities, using gradient boosting to forecast biological responses from medical records and so forth. My lab is within Research Biology in Genentech which is *very* academic-like. Our environment is ideal either for landing an academic professorship or an industry job. I would be delighted to provide more information about how life is in Genentech. The interested candidates can apply here <https://www.gene.com/careers/detail/202102-103783/Postdoctoral-Fellow-Artif…>. Feel free to drop me a message so that I am aware of your application. Ciao, -- *Tommaso Biancalani PhD* *Director and Senior Scientist* AI/ML (Research Biology) Genentech <https://www.gene.com/> | +1-650-608-0381 -- Michael J Keiser, PhD Associate Professor, UCSF Chan Zuckerberg Initiative Ben Barres Investigator Paul G. Allen Frontiers Group Distinguished Investigator Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Kavli Institute for Fundamental Neuroscience Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: Postdoc position available at Institut Pasteur
by Andrej Sali 15 Mar '21

15 Mar '21

Sent from my iPhone Begin forwarded message: > From: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Date: March 15, 2021 at 1:03:08 AM PDT > To: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Subject: Postdoc position available at Institut Pasteur > > Dear friends and colleagues, > > I hope you are all well in these strange times. > > I am writing to you because there is a postdoc position available in my group at Institut Pasteur (Paris, France) starting September 2021. > The position is funded by the French Research Agency (ANR) to work on integrating cryo-EM data in MD simulations for > single-structure and ensemble refinement. If you have talented PhD students (or postdocs) looking for a postdoc, please let them know of this opportunity. > They can contact me directly with any question. More info about this position can be found here: > > https://research.pasteur.fr/en/job/154853/ > > Have a nice day and stay safe, > Max > > --------------------------------------------------------------------------------- > Max Bonomi, Ph.D. HDR > Chargé de Recherche, CNRS UMR 3528 > Group Leader, Institut Pasteur > Department of Structural Biology and Chemistry > 28 rue du Docteur Roux > 75015 Paris, France > phone: +33 (0)1 44 38 93 63 > web: https://research.pasteur.fr/en/member/massimiliano-bonomi/ > email: mbonomi(a)pasteur.fr > twitter: https://twitter.com/BonomiMax >

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[Compbio-allhands] 3/18/21 BBC Seminar with Hunter Fraser, PhD
by Flowers, Nicole 12 Mar '21

12 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Hunter Fraser, Ph.D. Stanford Using hybrids to explore the evolution of complex traits March 18, 2021 N. Ahituv, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Spring 2021 UCSF BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 10 Mar '21

10 Mar '21

Dear all, Please see the attached spring quarter flyer to see what’s in store for the BBC Seminar Series! Note that the zoom link is the same as the one we used for the winter quarter. Thank you! Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: Lots of new US positions at exscientia
by Brian Shoichet 07 Mar '21

07 Mar '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Reid Olsen <reidolsen(a)gmail.com> Date: Sun, Mar 7, 2021, 2:59 AM Subject: Lots of new US positions at exscientia To: Brian Shoichet <bshoichet(a)gmail.com> Hi Dr. Shoichet, I wanted to pass along that we are opening a miami branch focused on chemistry/computational chemistry/machine-learning and AI. While the office is in miami most of the positions could likely accommodate work from home on the east coast time zone. If you know anyone who might be interested, or another person or group to reach out to, please let me know. Hope you guys are doing well, -Reid Reid Olsen Ph.D. Pharmacology +447936861355 (UK) +1-503-896-1186 (USA)

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[Compbio-allhands] 3/11/21 BBC Seminar with Judith Klinman, PhD
by Flowers, Nicole 05 Mar '21

05 Mar '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Judith Klinman, Ph.D. UC Berkeley Emerging Experimental Probes of Reaction Specific Dynamical Networks that Control Enzyme Activation March 11, 2021 S. Dickinson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Fwd: A prestigious postdoctoral fellowship in Singapore for early-career researchers
by Andrej Sali 04 Mar '21

04 Mar '21

> Begin forwarded message: > > From: "Nanyang Technological University $NTU$, Singapore" <ntu(a)sci.scientific-direct.net> > Subject: A prestigious postdoctoral fellowship in Singapore for early-career researchers > Date: March 4, 2021 at 6:32:06 AM PST > To: "A Sali" <sali(a)salilab.org> > Reply-To: "Talent Recruitment and Career Support Office, NTU, Singapore" <ntuppf(a)ntu.edu.sg> > > <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/B/~/0> > Online version <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> > > Young and research-intensive, Nanyang Technological University (NTU Singapore) is ranked 13th globally. It is also placed 1st among the world’s best young universities. NTU has a vibrant research eco-system with a high proportion of early career researchers. It has a healthy environment for interdisciplinary research collaboration and the research is well funded. NTU invites outstanding early-career researchers to apply for appointment as a NTU Presidential Postdoctoral Fellow. > > > > APPLY NOW <https://sci.scientific-direct.net/c/1677209/625329550f36b449/9> > The NTU Presidential Postdoctoral Fellowship, aims to provide the opportunity for outstanding early career researchers from Singapore and around the world, to conduct independent investigations in any discipline at NTU. This Fellowship provides research funding over two years. There is personal development opportunities coupled with mentorship in an established research group. These conditions will empower the Fellows to strive for research excellence and impact and enable them to meet their ambitions as global research leaders. > > PPF BENEFITS > > The Presidential Postdoctoral Fellowship provides: > > A two-year tenure with a salary of SGD 80,000 per year. > A research grant of up to SGD 100,000 per year. > A housing grant of SGD 18,000 per year with eligibility for subsidized apartment accommodation (subject to availability) > Relocation expenses of up to SGD 4,000 (if eligible) > Mentorship and support in an established research group. > Opportunity to work with faculty in mentoring graduate students. > Exposure to the most dynamic and diverse global growth regions. > ELIGIBILITY CRITERIA > > Within 5 years of obtaining Ph.D. or equivalent degree > Demonstrable intellectual excellence. > Maturity and capacity to begin an independent research career. > Desire and potential to develop as a future academic leader. > Submit a thoughtful and realistic research proposal > Be available to take up the position no later than 31 Dec 2021. > HOW TO APPLY > > The application is open from 15 January 2021 to 15 April 2021 (Singapore Time, UTC+8). > > Applications must submitted in electronic format via NTU Online Application Portal <https://sci.scientific-direct.net/c/1677209/625329550f36b449/1>. > > > APPLY NOW <https://sci.scientific-direct.net/c/1677209/625329550f36b449/3> > > Checklist > > The following supporting documents have to be attached to the online application form: > > Cover Letter > Comprehensive CV (with full publication list) > Official transcript or Degree Certificate in English (PhD’s degree) > Research proposal (in no more than 2 pages, template for download <https://sci.scientific-direct.net/c/1677209/625329550f36b449/4>) > Contact information of two referees (one must be PhD Supervisor) > Top 3 publications (in PDF) and any other supporting documents (scanned copy) > Interested applicants are advised to have them ready before applying on-line. Late or incomplete applications will not be considered. > > For more information on the Presidential Postdoctoral Fellowship 2021, please visit http://www.ntu.edu.sg/tracs/ppf <https://sci.scientific-direct.net/c/1677209/625329550f36b449/5> > > Queries about the application can be directed to ntuppf(a)ntu.edu.sg <mailto:ntuppf@ntu.edu.sg> > > > If you no longer wish to receive emails from NTU please send an email to ntuppf(a)ntu.edu.sg <mailto:ntuppf@ntu.edu.sg> with the word Unsubscribe in the subject line. > Share: <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/sali@salilab.…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> > You have received this e-mail in the genuine belief that its contents would be of interest to you. To not receive these messages from Web of Science Author Connect®, please go to our preference page <https://sci.scientific-direct.net/r/r.asp?1677209&625329550f36b449&H>. Web of Science Author Connect® (also known as Scientific Direct) is a service provided by Clarivate. To access our privacy statement, please click here <https://sci.scientific-direct.net/c/1677209/625329550f36b449/10>. > > > Clarivate > 1500 Spring Garden Street > 4th Fl > Philadelphia, PA 19130 > USA > > <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/E/~/0>

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[Compbio-allhands] 3/4/21 BBC Seminar with David Relman, MD
by Flowers, Nicole 26 Feb '21

26 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK [cid:3f1e4789-f312-4f01-ba7a-5d9297c88bb9] Co-Sponsored by The Gladstone Center for Cell Circuitry David Relman, MD Stanford The response to disturbance in the human microbial ecosystem March 4, 2021 L. Weinberger, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/25/21 BBC Seminar with Kevin Eggan, PhD
by Flowers, Nicole 19 Feb '21

19 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Kevin Eggan, Ph.D. Harvard Deciphering the Molecular Logic of Motor Neuron Degeneration in ALS February 25, 2021 L. Wu, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/18/21 BBC Seminar with Gaudenz Danuser, PhD
by Flowers, Nicole 12 Feb '21

12 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Gaudenz Danuser, Ph.D. UT Southwestern How shape shapes cancer cells February 18, 2021 T. Nagy, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/11/21 BBC Seminar with Philip Kranzusch, PhD
by Flowers, Nicole 05 Feb '21

05 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Philip Kranzusch, Ph.D. Harvard Evolution of antiviral immunity February 11, 2021 R. Tibble, Host This lecture will NOT be recorded as unpublished data will be shared. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Fwd: New Postdoc Fellowship at the Chicago Center for Theoretical Chemistry
by Andrej Sali 05 Feb '21

05 Feb '21

> Begin forwarded message: > > From: "Gregory A. Voth" <gavoth(a)uchicago.edu> > Subject: New Postdoc Fellowship at the Chicago Center for Theoretical Chemistry > Date: February 4, 2021 at 4:57:10 PM PST > To: "Gregory A. Voth" <gavoth(a)uchicago.edu> > > > Dear Colleague, > > We have a prestigious new postdoc fellowship at the CCTCh. The advertisement can be found here: > > https://chemistryjobs.acs.org/job/31039/research-fellowship-in-theoretical-… <https://chemistryjobs.acs.org/job/31039/research-fellowship-in-theoretical-…> > > Please ask the very best people in your group to apply if they are interested. According to the add linked above, the search closes March 5th but this deadline may be extended. > > Best wishes, > Greg Voth > > __________________________________________________________________ > > Gregory A. Voth, Ph.D., FRSC > Haig P. Papazian Distinguished Service Professor, > Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics > Founding Director, Chicago Center for Theoretical Chemistry (CCTCh) > > Department of Chemistry > The University of Chicago > 5735 S. Ellis Avenue > Chicago, Illinois 60637 > Phone: 773-702-9092 > Fax: 773-795-9106 > Administrative Assistant: 773-702-9096 > Email: gavoth(a)uchicago.edu <mailto:gavoth@uchicago.edu> > Group Web Site: vothgroup.uchicago.edu <http://vothgroup.uchicago.edu/> > CCTCh Web Site: https://cctch.uchicago.edu/ <https://cctch.uchicago.edu/> > ___________________________________________________________________

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[Compbio-allhands] OpenEye Scientific
by Grabe, Michael 30 Jan '21

30 Jan '21

Hi everyone, Please see the opportunities from OpenEye below. Best Michael Begin forwarded message: From: Lillian Chong <ltchong42(a)gmail.com<mailto:ltchong42@gmail.com>> Subject: Re: students? Date: January 21, 2021 at 10:12:59 AM PST To: "Grabe, Michael" <Michael.Grabe(a)ucsf.edu<mailto:Michael.Grabe@ucsf.edu>> Hi Michael, I hope you are keeping well. The job listings for OpenEye Scientific can be found here: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.eyesopen.com_caree… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.eyesopen.com_caree…> Senior Scientific Software Developer (MD Specialist) - looking to hire 2 or more for this position Scientific Software Developer (Antibody Modeling) Scientific Software Developer (Molecular Modeling) Scientific Software Developer (Free-Energy Calculations) The computational cryo-EM position is not yet posted, but there is definitely interest in hiring someone in this area. Can you please post to the computational biophysics list at UCSF? Thanks so much! Lillian -- Lillian T. Chong Associate Professor Department of Chemistry University of Pittsburgh 219 Parkman Avenue Pittsburgh, PA 15260 (412) 624-6026

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[Compbio-allhands] 2/4/21 Clements Lecture with Lillian Kenner
by Flowers, Nicole 29 Jan '21

29 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/pUYmCK Biophysics Alumna Lillian Kenner Clements Lecture A Structural View of Translation Initiation using cryo-EM February 4, 2021 A. Frost, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry.

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[Compbio-allhands] 1/28/21 BBC Seminar with Robert Spitale, PhD
by Flowers, Nicole 22 Jan '21

22 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Robert Spitale, Ph.D. UC Irvine Chemical Approaches to Analyzing the Transcriptome January 28, 2021 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/21/21 BBC Seminar with Axel Brunger, PhD
by Flowers, Nicole 15 Jan '21

15 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Axel Brunger, Ph.D. Stanford Molecular Mechanisms of Synaptic Neurotransmitter Release January 21, 2021 R. Edwards, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/14/21 BBC Seminar with Donita Brady, PhD
by Flowers, Nicole 08 Jan '21

08 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Donita Brady, Ph.D. University of Pennsylvania Cellular and Molecular Determinants of Copper Activation of Protein Kinases in Cancer January 14, 2021 N. Jura, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/7/21 BBC Seminar with Florentine Rutaganira, PhD
by Flowers, Nicole 30 Dec '20

30 Dec '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK CCB Alum Florentine Rutaganira, Ph.D. UC Berkeley Chemical Biology in the Closest Living Relatives of Animals January 7, 2021 C. Chio, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Winter 2021 UCSF BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 18 Dec '20

18 Dec '20

Dear all, Please see the attached winter quarter flyer to see what’s in store for the BBC Seminar Series! Note that we will be using the same link for the entirety of the quarter. Thank you and Happy Holidays! Nicole -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] Fwd: Vertex Fellows Recruitment (Applications Due Jan 15, 2021)
by Brian Shoichet 13 Dec '20

13 Dec '20

FYI. ---------- Forwarded message --------- From: Georgia McGaughey <georgia_mcgaughey(a)vrtx.com> Date: Sun, Dec 13, 2020 at 3:47 AM Subject: Vertex Fellows Recruitment (Applications Due Jan 15, 2021) To: Brian Shoichet <shoichet(a)cgl.ucsf.edu> Brian, I'm writing to ask for your help as we seek great candidates for the 6th class of the Vertex Fellows program. Our goal in creating the Vertex Fellowship is to attract some of the most talented scientists and physicians to join Vertex for one year of immersive learning about the science of discovering and developing medicines.  Vertex Fellows get to work as part of a project team to create transformative medicines for patients with serious diseases, learn about the variety of functions that contribute to getting these medicines to patients, and receive mentorship from senior leaders. This is a highly competitive program, and our 35 Fellows to date have been fantastic. Each Fellow is assigned both a project mentor and a career mentor, and is embedded within an existing project team based on his or her interests and experience, and our needs.  In addition, Fellows receive a week of intensive didactic training on the science of drug discovery and the business of creating medicines, as well as ongoing group training throughout the year.  The program is intentionally short (one year) so it augments rather than replaces a traditional postdoc or medical training.   Fellows are placed at one of our Research sites starting in September 2021.  We provide career advice and mentorship to help the Fellows as they consider their next step, potentially including open positions at Vertex, toward the end of the program. I am asking for your help with identifying stellar applicants for this opportunity. *Do you know anyone who might be a good fit?  Applications are due by January 15, 2021.  More information and a link to apply can be found on our website:* https://www.vrtx.com/we-are-vertex/innovation-programs I'm also attaching a 1-page flyer with more information.  I’d be particularly grateful if you would pass this along to any students or postdocs whom you think might be interested.  Please do let me know what questions or feedback you have about the program. Thanks for your help, Georgia This email message and any attachments are confidential and intended for use by the addressee(s) only. If you are not the intended recipient, please notify me immediately by replying to this message, and destroy all copies of this message and any attachments. Thank you. -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 12/17/20 Seminar with Sarah Loerch
by Flowers, Nicole 04 Dec '20

04 Dec '20

Seminar with Dr. Sarah Loerch UC Santa Cruz Structural basis of P-body regulation in sensory neurons Stephen Floor, Host December 17, 2020 Noon http://tiny.ucsf.edu/LoerchSeminar<http://tiny.ucsf.edu/LoerchSeminar> Flyer attached -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] 12/10/20 BBC Seminar with Aviv Regev
by Flowers, Nicole 03 Dec '20

03 Dec '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Aviv Regev, Ph.D. Genentech Co-Sponsored by the Helen Diller Cancer Center: Cell Atlases as Roadmaps to Understand Genes and Treat Disease December 10, 2020 B. Zaro, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] 12/3/20 BBC Seminar with Laura Kiessling, PhD
by Flowers, Nicole 30 Nov '20

30 Nov '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Laura Kiessling, Ph.D. MIT Carbohydrates as Cellular IDs December 3, 2020 D. Schwarz & J. Braxton, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] Fwd: open position in Gilead's modeling group
by Jacobson, Matt 22 Nov '20

22 Nov '20

— Matt Begin forwarded message: From: Vickie Tsui <Vickie.Tsui(a)gilead.com<mailto:Vickie.Tsui@gilead.com>> Subject: open position in Gilead's modeling group Date: November 17, 2020 at 1:03:43 PM PST To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt, It has been a long time since we talked, and I hope you and your family are doing well in spite of the crazy time. I wanted to let you know that our Modeling Group at Gilead has an opening currently. We are a group of 7 modelers (one just left last week – hence the open position), and we work closely with the other two groups (crystallography and informatics) in the Department of Structural Chemistry. We are parallel with the Medicinal Chemistry and Biology departments, and work closely with them on project teams. Modelers are involved from the target conception stage all the way to delivering a development candidate, and also have opportunities to be Core Team members or even to lead a project. Please feel free to pass this information on to your group, or to recommend specific people in your lab. My email isVickie.tsui(a)gilead.com<mailto:Vickie.tsui@gilead.com>, and my number is 650-534-8426. Thank you very much - I hope you take care and stay healthy. Best Regards, Vickie Vickie Tsui, Ph.D. Senior Director, Structural Chemistry Gilead Sciences, Inc. (650)653-9447

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[Compbio-allhands] FW: Reminder: Gustavo Silva seminar at noon today
by Flowers, Nicole 19 Nov '20

19 Nov '20

From: "Floor, Stephen" <Stephen.Floor(a)ucsf.edu> Date: Thursday, November 19, 2020 at 6:17 AM Subject: Reminder: Gustavo Silva seminar at noon today Hi everyone, Quick reminder there's a special seminar from Gustavo Silva from Duke at noon today. His talk is titled "K63 ubiquitin and translation control during oxidative stress”. His CV and the flyer are attached. The talk zoom is at http://tiny.ucsf.edu/SilvaSeminar. Hope you can make it! Best regards, Stephen

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[Compbio-allhands] Fwd: help with recrutiment
by Andrej Sali 17 Nov '20

17 Nov '20

> Dear Andrej > Please find the ad below and many thanks for helping out: > > The A*STAR Bioinformatics Institute in Singapore is a leading esearch institute connecting clinical, biological and cellular omics > data to biomolecular mechanisms through big data analysis and computational method development. We advance science and > develop innovative technology to further economic growth and improve lives. > > We are recruiting internationally recognized new group leaders with experience in biomolecular mechanism discovery through > computational data analysis of clinical, biological or cellular omics data. These could be genomics, transcriptomics, proteomics or > other omics data ideally intersecting with clinical data sets. > > Research areas include metabolic, infectious and neurological diseases including early childhood development. Experience in > applying AI and Machine learning is a plus. > > The applicant is expected to: > > 1. have solid background in Computer Science and Bioinformatics > 2. have shown abilities to combine and integrate data from multiple data sources linking data to molecular mechanisms > 3. be very versatile in understanding concepts in diverse biological fields and have the ability to use domain knowledge > effectively in the design and execution of analyses > 4. have good communication skills and fit in well in teams of very diverse background > 5. have strong publication background and academic track record > > Please contact chandra verma (chandra(a)bii.a-star.edu.sg <mailto:chandra@bii.a-star.edu.sg>) with your CV and have 3-4 letters of reference sent > > chandra >

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[Compbio-allhands] Fwd: Hiring a postdoc in my group
by Jacobson, Matt 16 Nov '20

16 Nov '20

— Matt Begin forwarded message: From: Chia-en Chang <chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu>> Subject: Hiring a postdoc in my group Date: November 12, 2020 at 1:41:26 PM PST To: Chia-En Angelina Chang <chia-en.chang(a)ucr.edu<mailto:chia-en.chang@ucr.edu>> Cc: chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu> Dear friends, I'm looking for a postdoc to work in the area of ligand and protein binding kinetics and free energy. The position is available immediately and will focus on developing and applying our newly developed Binding Kinetics (BKiT) package to compute unbinding free energy profile to problems in pharmaceutical drug discovery. Ideal candidates are someone with programming experience and expertise with MD and/or other molecular mechanics simulation techniques. Please pass along this link to anyone suitable you might be aware of: https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> Hope all is well and stay safe! Thank you very much, Chia-en -- Chia-en A. Chang, Ph.D. Professor and Vice Chair of Chemistry Cooperating Faculty Member in the Department of Chemical Eng ETOX Program, GGB Program and Biochemistry program UC, Riverside Riverside, CA 92521 Ph:951-827-7263 https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h… <https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h…>

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[Compbio-allhands] 11/19/20 Seminar with Gustavo Silva
by Flowers, Nicole 05 Nov '20

05 Nov '20

Seminar with Dr. Gustavo Silva Duke University K63 upbiquitin and translation control during oxidative stress Stephen Floor, Host November 19, 2020 Noon http://tiny.ucsf.edu/silvaseminar Flyer attached -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: computational biology positions in the Pritykin lab at Princeton
by Andrej Sali 05 Nov '20

05 Nov '20

> Begin forwarded message: > > From: Matvei Khoroshkin <khorms21(a)gmail.com> > Subject: Fwd: computational biology positions in the Pritykin lab at Princeton > Date: November 4, 2020 at 6:27:26 PM PST > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > A friend of mine has just started as an Assistant Professor at Princeton and he is looking for people. Is there a chance you could spread the word through Compbio-allhands listserv? > Thank you! > > Best, > Matvei > > ---------- Forwarded message --------- > From: Yury Pritykin <pritykin(a)princeton.edu <mailto:pritykin@princeton.edu>> > Date: Wed, Nov 4, 2020 at 6:13 PM > Subject: computational biology positions in the Pritykin lab at Princeton > To: Matvei Khoroshkin <khorms21(a)gmail.com <mailto:khorms21@gmail.com>> > > > Computational biology positions at multiple levels are available in the Pritykin lab in the Lewis-Sigler Institute for Integrative Genomics and the Computer Science Department at Princeton University. > > The lab is broadly interested in developing computational methods for design and analysis of high-throughput functional genomic assays and perturbations, with a focus on multi-modal single-cell technologies, and applying these methods to study regulatory genomics of cell function and cell-cell interactions in vivo in close collaboration with experimental biologists, with a focus on immunology and cancer. More information is available at https://pritykin.github.io/ <https://pritykin.github.io/> > > Postdoctoral, staff scientist, internship positions are available for highly motivated individuals with strong background in computational biology and other quantitative and computational fields. (Prospective PhD students interested in working in the lab are encouraged to apply for QCB (https://lsi.princeton.edu/qcbgraduate <https://lsi.princeton.edu/qcbgraduate>) and/or COS (https://www.cs.princeton.edu/grad <https://www.cs.princeton.edu/grad>) programs at Princeton.) > > For any questions and additional details about the positions, please contact Yuri Pritykin at pritykin(a)princeton.edu <mailto:pritykin@princeton.edu> > >

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[Compbio-allhands] 11/5/20 BBC Seminar with Pardis Sabeti, PhD
by Flowers, Nicole 23 Oct '20

23 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/aJBL3J Pardis Sabeti, Ph.D. Harvard Outbreak Response in the Genomic Age November 5, 2020 W. Saylor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/22/20 BBC Seminar with Mikhail Shapiro, PhD
by Flowers, Nicole 16 Oct '20

16 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/miFF7x Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function October 22, 2020 J. Witte, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Jnana Therapeutics
by Jacobson, Matt 16 Oct '20

16 Oct '20

Two more job postings for comp chemists, via UCSF alum https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_job-2D… https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_job-2D… — Matt Begin forwarded message: From: Justin Rettenmaier <jrettenmaier(a)jnanatx.com<mailto:jrettenmaier@jnanatx.com>> Subject: Jnana Therapeutics Date: October 13, 2020 at 2:12:57 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, It’s been quite some time since I’ve seen you! I hope you are well and staying safe during these crazy times. One of our last interactions I remember was taking your CADD mini-course. We just had a candidate interview a few weeks ago who was surprised that a “biologist” would have ever heard of free energy perturbations :) After leaving Jim Wells' lab at UCSF, I ended up taking a postdoc position with Sue Lindquist at the Whitehead Institute up until she tragically passed away in late 2016. I was planning to continue my postdoc with Stuart Schreiber, but once I found out about a new company he was forming, I decided to jump in as employee #6. Jnana is focused on identifying small-molecule therapeutics targeting the SLC family of metabolite transporters for a range of therapeutic indications, including inborn errors of metabolism, autoimmune disease, and neurological disease. I co-invented a novel ligand discovery technology here at Jnana that we call RAPID, which was inspired by Ben Cravatt’s work with covalent fragment screening in live cells as well as my experiences with Tethering in Jim’s lab. It would be really fun to tell you a bit about it at some point if you were interested. I am writing to let you know that we have two job openings - one in cheminformatics and another in computational modeling (postings here<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_join-2…>). I’ve tried and failed miserably in the past to recruit my old friends from the Bay Area to come out to the East Coast! I wonder if you could recommend any brave souls that might want to make the journey. All the best, Justin

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[Compbio-allhands] Fwd: post-doc offer front edge academic/industrial setting
by Andrej Sali 11 Oct '20

11 Oct '20

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: dp devos <damienpdevos(a)gmail.com> > Subject: post-doc offer front edge academic/industrial setting > Date: October 10, 2020 at 3:19:46 AM PDT > To: Francisco Melo <fmelo(a)bio.puc.cl>, Maya Topf <m.topf(a)cryst.bbk.ac.uk>, Christian Jogler <Christian(a)jogler.de>, Ida van der Klei <i.j.van.der.klei(a)rug.nl>, Laura van Niftrik <l.vanniftrik(a)science.ru.nl>, Lucas Nicolás Alberca (vía Google Drive) <lucasalberca(a)gmail.com>, Luciano Marcon <lmarcon(a)upo.es>, Xavier De Bolle <xavier.debolle(a)unamur.be>, Cedric Govaerts <cgovaert(a)ulb.ac.be>, Lista IPs y asociados del CABD <cabd_associates(a)upo.es>, Simonetta Gribaldo <simo(a)pasteur.fr>, celine brochier <celine.brochier-armanet(a)univ-lyon1.fr>, Ricardo Rodriguez de la Vega <ricardo.rodriguezdelavega(a)gmail.com>, lazaro centanin <lazaro.centanin(a)cos.uni-heidelberg.de>, Maximiliano Gutierrez <max.g(a)crick.ac.uk>, Claudia Chica <ensentis(a)gmail.com>, "Mark C. Field" <mfield(a)mac.com>, Emmanuel Reynaud <emmanuel.reynaud(a)ucd.ie>, Marco Carraro <refract(a)ngp-net.bio.unipd.it>, Edu Andrés León <eduardo.andres.leon(a)gmail.com>, Andrey Kajava <andrey.kajava(a)crbm.cnrs.fr>, Silvio C E Tosatto <silvio.tosatto(a)unipd.it>, IDPfun - Diana Battistella <idpfun(a)ngp-net.bio.unipd.it>, Luis Sanchez-Pulido <sanchezpulido(a)gmail.com>, "Andrade, Dr. Miguel" <andrade(a)uni-mainz.de>, "Antonio J. Perez" <ajperez(a)upo.es>, Bruno Contreras Moreira <bcontreras(a)eead.csic.es>, Andrej Sali <sali(a)salilab.org>, "Michael P. Rout" <rout(a)mail.rockefeller.edu>, "Korkin, Dmitry" <dkorkin(a)wpi.edu> > > Dear colleague, > Please spread around this opportunity for realizing a post-doc between my lab and the industry in Seville. > Thanks in advance > d > > > > > Looking forward to applying your academic knowledge in an industrial setting? Here is a great opportunity to work at the front edge of collaboration between university research and commercial application. > > The CABD in collaboration with CITRE, a Bristol-Myers Squibb Company is offering a postdoctoral position on the groundbreaking topic of targeted protein degradation, in the context of an academic-industrial research collaboration. The project involves studying and understanding fundamental aspects of targeted protein degradation, involving molecular glue and heterobifunctional degraders (aka PROTACs) of enormous therapeutic potential. We are looking for a talented scientist with: > • PhD in a relevant discipline, such as structural biology, computational biology, bioinformatics or related fields, accompanied by original research publications. > • Experience in understanding protein structures and sequences from a computational perspective, combined with a strong interest in evolution and fundamental principles. > • Strong expertise in scripting and programming (e.g. R, Python, C++ or others), machine/deep learning and methods development experience is a plus. > • Attention to detail and capacity to communicate technical/scientific concepts clearly and > concisely to audiences of varied backgrounds. > • Verbal and written English language fluency. > > The position will be shared between the CABD and CITRE in Seville, Spain. Please send a short motivation letter, CV and 2 contacts for references to Alejandro Panjkovich and Damien Devos at damienpdevos at gmail.com <http://gmail.com/> and Alejandro.Panjkovich at bms.com <http://bms.com/>. > --- > Damien P. Devos, Cientifico Titular CSIC > Andalusian Center for Developmental Biology (CABD) > Pablo de Olavide University (UPO) > Spanish Science Council (CSIC) > > Latest publication: Origin and evolution of polycyclic triterpene synthesis. Santana-Molina et al., MBE. 2020 > https://doi.org/10.1093/molbev/msaa054 <https://doi.org/10.1093/molbev/msaa054> > > Research highlight: > https://www.csic.es/es/actualidad-del-csic/las-bacterias-podrian-ser-el-ori… <https://www.csic.es/es/actualidad-del-csic/las-bacterias-podrian-ser-el-ori…> > > Direction: > CABD/UPO, > Carretera de Utrera km1, > 41013 Sevilla, Spain > Tel: +34 (0) 954977930 > Fax: +34 954349376 > http://cellcollectives.com/dt_doctors/microbiologys-platypus/ <http://cellcollectives.com/dt_doctors/microbiologys-platypus/> > http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa… <http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa…> > > ORCID: orcid.org/0000-0002-9453-4753 <http://orcid.org/0000-0002-9453-4753> > Scopus author ID: 7004062844 > https://www.scopus.com/authid/detail.uri?authorId=7004062844 <https://www.scopus.com/authid/detail.uri?authorId=7004062844> > Twitter: @pvcbacteria > > PVC bacteria: > http://www.pvcbacteria.org <http://www.pvcbacteria.org/> > > Next conference: > PVC meeting, Bergen, NO 2021 > > "Education is the most powerful weapon which you can use to change the world." > Nelson R. Mandela (1918-2013) >

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[Compbio-allhands] 10/8/20 BBC Seminar with Cole Trapnell, PhD
by Flowers, Nicole 08 Oct '20

08 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/XsDVET Cole Trapnell, Ph.D. University of Washington Embryo scale single-cell spatial transcriptomics October 8, 2020 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view the calendar in iCal.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/15/20 Seminar with Nicholas Ball, PhD, Noon
by Flowers, Nicole 07 Oct '20

07 Oct '20

Seminar with Nicholas D. Ball, PhD Pomona College Synthetic strategies toward fluorosulfurylation of organic molecules & sulfer-fluoride exhange (SUFEX) Thursday, October 15, 2020 Noon Danica Galonic Fujimori, Host 415.514.0147 danica.fujimori(a)ucsf.edu<mailto:danica.fujimori@ucsf.edu> https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_9995012… <https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_9995012… > Meeting ID: 999 5012 2338 Password: 590025 -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Invitation | Sir Ernst Chain Lecture 2020 | 4 November 2020: Enzymes, evolution and disease: 50 years of Bioinformatics Prof Dame Janet Thornton
by Andrej Sali 07 Oct '20

07 Oct '20

> Begin forwarded message: > > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Subject: FW: Invitation | Sir Ernst Chain Lecture 2020 | 4 November 2020: Enzymes, evolution and disease: 50 years of Bioinformatics Prof Dame Janet Thornton > Date: October 7, 2020 at 9:48:31 AM PDT > > > Dear Colleague > > You may wish to attend and/or advertise to your colleagues this virtual talk. > > Best > > Mike > --------------------------------------- > > > > > The honour of your company is requested at the Sir Ernst Chain Lecture 2020: > > Enzymes, Evolution and Disease: 50 years of bioinformatics > Professor Dame Janet Thornton, FRS, FMedSci, EMBL-EBI > > Date: Wednesday 4 November 2020 > Time: 17:00 – 18:30 GMT > Venue: Microsoft Teams Live Event > > The lecture is free to attend and open to all, but registration is required in advance. > Register to attend on Eventbrite <https://www.eventbrite.co.uk/e/sir-ernst-chain-lecture-2020-enzymes-evoluti…> > The link to join the event will be circulated in the joining instructions > > Abstract > The last 50 years have seen bioinformatics evolve from a relatively minor pursuit into one of the major areas of biological research today. This has been driven by the DNA sequencing revolution and the rise of structural biology, which was only just beginning 50 years ago. Some of the first protein structures were of enzymes and were determined in Oxford – a prelude to understanding how they functioned as catalysts and performed their biological function. Today we have garnered data on almost 1000 enzymes, whose structures and functions are known, to improve our understanding of biocatalysis. One surprising finding has been that most enzymes have evolved from other ‘older’ enzymes, by slight modification of the binding sites or occasionally the catalytic mechanism. Another is that many diseases occur because of single amino acids variants which affect enzyme function. Even ageing can be modulated by single variants. These variants are gradually being identified and understood in terms of their effects on health, diseases and ageing. > > Despite all these data, biology remains in a ‘discovery phase’, where there are many many basic facts we still do not know or do not understand about how living organisms work. However, in parallel we now see an increasing push to exploit this flood of data to improve the world we live in. Bioinformatics provides the glue and the analytical approaches to develop quantitative models of life, which in the clinic can potentially help in diagnosis, prognosis and even sometimes identify a therapy. It is clear that the next 50 years will see the emergence of robust mathematical models to characterize living processes and make predictions. The relatively recent emergence of machine learning and synthetic biology have further fuelled the possibilities to harness all this molecular data for the benefit of society – addressing some of our major societal issues like infectious diseases, antimicrobial resistance and designing green waste disposal. > > The lecture will highlight the contributions of bioinformatics over the last 50 years and provide a glimpse of future opportunities. > > Biography > Janet Thornton is a Senior Scientist at the European Molecular Biology Laboratory’s European Bioinformatics Institute (EMBL-EBI) on the Wellcome Genome Campus at Hinxton, near Cambridge, UK. She was Director of the Institute from 2001-2015. > > She studied for her PhD at the National Institute for Medical Research at Mill Hill after graduating as a physicist. After a post-doc in Oxford, Janet moved to London (Birkbeck and later UCL) before becoming Director at EMBL-EBI. Janet’s research is focused on proteins, especially their structure, function and evolution. She is a computational biologist, working at the interface of biology with physics, chemistry, and computing. This includes a detailed analysis of enzyme biocatalysts, their mechanisms and the evolution of new functions. Her group is also investigating the molecular basis of ageing. She has published more than 500 scientific papers, was elected to the Royal Society in 1999 and is a Foreign Associate of US National Academy of Sciences. In 2012 she became a Dame Commander of the Order of the British Empire for services to bioinformatics. > > Please note that Imperial College London processes your personal data in line with the Advancement Privacy Notice. <http://www.imperial.ac.uk/advancement/about-us/advancement-policies/privacy…> If you have any questions or concerns about this, please contact events(a)imperial.ac.uk <mailto:events@imperial.ac.uk>

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[Compbio-allhands] 9/24/20 BBC Seminar with Allison Williams, PhD
by Flowers, Nicole 28 Sep '20

28 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nhyH2x Allison Williams, Ph.D. UCSF Kickoff Lecture: Unravelling the mechanism of activation of the bacterial stress signaling platform September 24, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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Re: [Compbio-allhands] 10/1/20 BBC Seminar with Margaret Gardel, PhD
by Flowers, Nicole 25 Sep '20

25 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nORVLJ Margaret Gardel, Ph.D. University of Chicago Cytoskeletal Mechanosensing by LIM domains October 1, 2020 D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/1/20 BBC Seminar with Margaret Gardel, PhD
by Flowers, Nicole 25 Sep '20

25 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nORVLJ Margaret Gardel, Ph.D. University of Chicago Cytoskeletal Mechanosensing by LIM domains October 1, 2020 D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Program Officer Position at CPP Branch NIDA NIH
by Brian Shoichet 23 Sep '20

23 Sep '20

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Ananthan, Sam (NIH/NIDA) [E] <sam.ananthan(a)nih.gov> Date: Tue, Sep 22, 2020, 7:26 PM Subject: Program Officer Position at CPP Branch NIDA NIH To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Dear Dr. Shoichet, I recently joined NIDA and am writing to request your help. We have an opening for a Program Officer position in the Chemistry, Pharmacology, and Physiology Branch of NIDA/NIH. I would appreciate it very much if you could inform people from your group/organization who might be interested in applying for the position. The application deadline is September 30. The following is the link: https://www.usajobs.gov/GetJob/ViewDetails/578944200 Thanks. With best regards, Sam *Sam Ananthan, Ph.D.* *Chief, Chemistry and Pharmacology Branch* *Division of Neuroscience and Behavior* *National Institute on Drug Abuse* *National Institutes of Health* *North Bethesda, MD 20852* *Phone: 301-435-2199* *Cell: 301-204-2889* *Email: sam.ananthan(a)nih.gov <sam.ananthan(a)nih.gov>*

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[Compbio-allhands] Fwd: [3dem] Data curation post for EMDB and EMPIAR
by Andrej Sali 17 Sep '20

17 Sep '20

> Begin forwarded message: > > From: Ardan Patwardhan <ardan(a)ebi.ac.uk> > Subject: [3dem] Data curation post for EMDB and EMPIAR > Date: September 17, 2020 at 1:20:30 AM PDT > To: 3dem(a)ncmir.ucsd.edu > > Dear all > > We have a post opening at EMBL-EBI, Hinxton UK to work on EMDB and EMPIAR data curation at a very exciting time when the archives are expanding rapidly both in volume and richness of content: https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01684&newlang=1&pos%5B… <https://urldefense.com/v3/__https://www.embl.de/jobs/searchjobs/index.php?r…> > > Many thanks and best wishes > > Ardan > > Ardan Patwardhan > Team Leader - Cellular Structure & 3D Bioimaging > EMDB & EMPIAR > European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory > Wellcome Trust Genome Campus > Hinxton, Cambridge CB10 1SD > _______________________________________________ > 3dem mailing list > 3dem(a)ncmir.ucsd.edu > https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem

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[Compbio-allhands] Fwd: junior position in theoretical structural biology
by Andrej Sali 09 Sep '20

09 Sep '20

> Begin forwarded message: > > From: Juri Rappsilber <Juri.Rappsilber(a)TU-Berlin.de> > Subject: junior position in theoretical structural biology > Date: September 9, 2020 at 6:56:35 AM PDT > To: "Rappsilber, Juri" <juri.rappsilber(a)tu-berlin.de> > > Hi * > > TU Berlin is looking for a junior group leader in theoretical structural biology. Deadline is extended to end of the month. If you know any candidates, please, let them know. Please also post in networks. > > All the best, > > Juri >

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[Compbio-allhands] Fwd: Foghorn Therapeutics is looking to hire a Computational Chemist
by Jacobson, Matt 27 Aug '20

27 Aug '20

Another job opening — Matt Begin forwarded message: From: Tori Caldwell <tcaldwell(a)foghorntx.com<mailto:tcaldwell@foghorntx.com>> Subject: Foghorn Therapeutics is looking to hire a Computational Chemist Date: August 26, 2020 at 8:27:21 AM PDT To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt, I am working with Johannes Voigt, one of our hiring managers, who is looking to hire a Computational Chemist – from Scientist to Principal Scientist level (ligand design and data analysis, not machine learning). We are fine with hiring someone junior. As a well-known leader in this space, I wanted to ask if you happen to know anyone who may be looking or have any suggestions on where I can find them or post the opening. We would really appreciate any and all help. Here is a link to the job - https://urldefense.proofpoint.com/v2/url?u=https-3A__foghorntx.com_careers_… <https://urldefense.proofpoint.com/v2/url?u=https-3A__foghorntx.com_careers_…> Thank you in advance for your time. Best, Tori Tori Caldwell| Director, Talent Acquisition and Culture tcaldwell(a)foghorntx.com<mailto:tcaldwell@foghorntx.com> Mobile: 617.949.5500 100 Binney Street, Suite 610 | Cambridge, MA 02142 [cid:image001.png@01D67B96.21BA32D0]

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[Compbio-allhands] Fall 2020 BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 27 Aug '20

27 Aug '20

Dear all, In lieu of the ability to post and view seminar notices around the building this year, please find the Fall 2020 BBC Seminar Series quarterly flyer attached to this message. Seminar notices will also be coming out via email, weekly. The full calendar for the academic year can be viewed here: https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series Thank you! Nicole BBC Seminar Series Thursdays, Zoom link sent weekly Academic Year 2021 Date Speaker Topic Host 9/24/20 Allison Williams, UCSF TBD James Fraser 10/1/20 Margaret Gardel, University of Chicago Cytoskeletal Mechanosensing by LIM domains Dyche Mullins 10/8/20 Cole Trapnell, University of Washington TBD Sourav Bandyopadhyay 10/22/20 Mikhail Shapiro, CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function Aashish Manglik 11/5/20 Pardis Sabeti, Harvard Outbreak Response in the Genomic Age Wren Saylor 12/3/20 Laura Kiessling, MIT Carbohydrates as Cellular IDs J. Braxton, D. Schwarz 12/10/20 Aviv Regev, Genentech Co-Sponsored with the Helen Diller Cancer Center: TBD Balyn Zaro -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: postdoc at Lilly
by Andrej Sali 25 Aug '20

25 Aug '20

> Begin forwarded message: > > From: YAN Lisa <Lisa.YAN(a)3ds.com> > Subject: postdoc at Lilly > Date: August 25, 2020 at 12:43:04 PM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > I have a customer at Lilly looking for a postdoc: > https://www.linkedin.com/jobs/view/1987007171/ <https://www.linkedin.com/jobs/view/1987007171/> > > if you have any graduates who would be interested, could you please let them contact me? Also, would appreciate if you could pass on to others who might be interested. > > Thanks, > > Lisa > This email and any attachments are intended solely for the use of the individual or entity to whom it is addressed and may be confidential and/or privileged. > If you are not one of the named recipients or have received this email in error, > (i) you should not read, disclose, or copy it, > (ii) please notify sender of your receipt by reply email and delete this email and all attachments, > (iii) Dassault Systèmes does not accept or assume any liability or responsibility for any use of or reliance on this email. > > Please be informed that your personal data are processed according to our data privacy policy as described on our website. Should you have any questions related to personal data protection, please contact 3DS Data Protection Officer at 3DS.compliance-privacy(a)3ds.com <mailto:3DS.compliance-privacy@3ds.com> > > For other languages, go to https://www.3ds.com/terms/email-disclaimer <https://www.3ds.com/terms/email-disclaimer>

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[Compbio-allhands] Fwd: EMBL Cell Biology & Biophysics Group Leader recruitment 2020
by Andrej Sali 25 Aug '20

25 Aug '20

> Begin forwarded message: > > From: Jan Ellenberg <jan.ellenberg(a)embl.de> > Subject: EMBL Cell Biology & Biophysics Group Leader recruitment 2020 > Date: August 25, 2020 at 5:01:56 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > I would like to draw your attention to the opening for two group leader positions in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for two outstanding scientists with a background in biology, physics, chemistry, engineering or mathematics who want to pursue original and interdisciplinary research in cutting-edge molecular cell biology or imaging technology development. > > In the area of cell biology, we would for example also welcome applicants that plan to work in unusual, including marine, model systems, or that take a theoretical approach to model dynamic cell biological processes. In the area of imaging technology, we would for example welcome applicants that develop novel microscopy technologies to probe the molecular or physical structure and function of cells. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. In addition, EMBL is a very inclusive and family friendly institution, including its own excellent day care on campus. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > > Jan > > Jan Ellenberg > Cell Biology and Biophysics Unit > European Molecular Biology Laboratory (EMBL) > Meyerhofstr. 1 > D-69117 Heidelberg > Germany > > T +49-6221-387-8391 > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> > >

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[Compbio-allhands] Fwd: Somebody interested in drugging the undruggable?
by Jacobson, Matt 23 Aug '20

23 Aug '20

Several bay area biotech companies are looking for comp chemists, including the opportunity below — Matt Begin forwarded message: From: Johannes Hermann <johannes.hermann(a)frontiermeds.com<mailto:johannes.hermann@frontiermeds.com>> Subject: Somebody interested in drugging the undruggable? Date: August 21, 2020 at 2:53:51 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, It was good talking to you recently – I was hoping for a favor – perhaps you can circulate the attached JD amongst your people – perhaps someone is looking to make a transition to industry and join an exciting startup? We would really like to work and train a junior comp chemist starting out! Thank you and have a good weekend Johannes ************************** [cid:c464279d-6d49-421d-99a1-495a8d8291da@namprd05.prod.outlook.com] Johannes Hermann, Ph.D. Chief Technology Officer https://urldefense.proofpoint.com/v2/url?u=https-3A__frontiermeds.com_&d=Dw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__frontiermeds.com_&d=Dw…> STATEMENT OF CONFIDENTIALITY: The information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain confidential or privileged information. If you are not the intended recipient, or the person responsible for delivering the e-mail to the intended recipient, be advised you have received this message in error and that any use, dissemination, forwarding, printing, or copying is strictly prohibited. Please notify the sender immediately by email at Johannes.hermann(a)frontiermeds.com<mailto:Johannes.hermann@frontiermeds.com> destroy all copies of this message and any attachments. Thank you.

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[Compbio-allhands] Fwd: Computational Chemist I Opening @ Broad Institute of MIT & Harvard
by Jacobson, Matt 09 Aug '20

09 Aug '20

— Matt Begin forwarded message: From: AJ Campbell <arthurc(a)broadinstitute.org<mailto:arthurc@broadinstitute.org>> Subject: Computational Chemist I Opening @ Broad Institute of MIT & Harvard Date: August 7, 2020 at 8:33:25 AM PDT To: Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu> Cc: Emma Seabrook <eseabroo(a)broadinstitute.org<mailto:eseabroo@broadinstitute.org>> Hi Dr. Jacobson, I hope you're doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join the Center for the Development of Therapeutics (CDoT) CADD group at the Broad Institute and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance current therapeutic projects within CDoT through structure-based and ligand-based modeling approaches. Take a look at the exciting pipeline of projects we are working on: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> Here are the links to the job description: https://urldefense.proofpoint.com/v2/url?u=https-3A__broadinstitute.wd1.myw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__broadinstitute.wd1.myw…> Please let me know if you have any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect you with our recruiter, Emma Seabrook, to fill in the details - she can be reached at eseabroo(a)broadinstitute.org<mailto:eseabroo@broadinstitute.org> Let me know if you have any questions and many thanks! Best, AJ Working at CDoT<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> - Broad Institute of MIT & Harvard Broadminded Blog: Alisha Caliman cuts across disciplines as a computational chemist<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> CDoT Publications<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> - CDoT's scientific leadership has an average of 15 years of Drug Discovery career experience and have advanced 32 compounds into the clinic. Together, they lead an organization of 80 research scientists and associates, 60% of whom have doctorates in relevant fields or areas of expertise. Arthur J Campbell, Ph.D. Group Leader, Senior Computational Chemist I _________________________________________ The Broad Institute of MIT and Harvard Center for the Development of Therapeutics Stanley Center for Psychiatric Research 415 Main Street, Cambridge, MA 02142 Tel 1-617-714-7372 Email ArthurC(a)BroadInstitute.org<mailto:ArthurC@BroadInstitute.org> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.BroadInstitute.org&… <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.BroadInstitute.org&…>

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[Compbio-allhands] Fwd: Update - EMBO Workshop: In situ Structural Biology - From Cryo-EM to Integrative Modelling
by Andrej Sali 28 Jul '20

28 Jul '20

> Begin forwarded message: > > From: "Tim Nuernberger" <tim.nuernberger(a)embl.de> > Subject: RE: Update - EMBO Workshop: In situ Structural Biology - From Cryo-EM to Integrative Modelling > Date: July 28, 2020 at 12:40:21 AM PDT > To: "'Andrej Sali'" <sali(a)salilab.org> > > Hi Andrej, > > We have now drafted a preliminary programme for the virtual conference which is available here: > https://www.embl.de/training/events/2020/ISS20-01/programme/index.html <https://www.embl.de/training/events/2020/ISS20-01/programme/index.html> > > Moreover please find attached an updated holding slide. Thanks for passing it on to your contacts which might be interested to join our virtual meeting as well. > > We have just re-opened registration and have already 74 registrations for it. > > Thanks a lot. > > Best wishes > Tim > >

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[Compbio-allhands] Fwd: Open University Professorship at the Max Perutz Labs, Vienna
by Andrej Sali 20 Jul '20

20 Jul '20

> Begin forwarded message: > > From: <deans-office(a)mfpl.ac.at> > Subject: Open University Professorship at the Max Perutz Labs, Vienna > Date: July 20, 2020 at 2:13:31 PM PDT > To: <sali(a)salilab.org> > Cc: "Alwin Koehler" <alwin.koehler(a)univie.ac.at>, "'Sascha Martens'" <sascha.martens(a)univie.ac.at> > > Dear Dr. Sali, > Please find attached a letter regarding an open call for a University Professorship of “Advanced Microscopy and Cellular Dynamics” at the Max Perutz Labs in Vienna. > We think that this an exciting opportunity and would greatly appreciate if you could inform qualified candidates from your laboratory or institute about this position. > Kind Regards, > Alwin Köhler & Sascha Martens >

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[Compbio-allhands] Fwd: Structural Biology Postdoctoral Fellow
by Andrej Sali 06 Jul '20

06 Jul '20

> Begin forwarded message: > > From: "Fesik, Stephen" <stephen.fesik(a)Vanderbilt.Edu> > Subject: Structural Biology Postdoctoral Fellow > Date: July 6, 2020 at 10:29:42 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > Thank you for forwarding my email last year to your student and postdoc email list at UCSF. I am looking for talented postdocs again and would greatly appreciate your help. > > I am writing to ask your assistance in identifying talented and highly accomplished structural biologists with a desire to join our group as a postdoctoral fellow. > > As you know, my lab is a multidisciplinary team, comprised of structural biologists, medicinal chemists, and cell biologists, committed to discovering and developing novel therapeutics for the treatment of cancer. We use fragment-based methods and structure-based design to discover small molecule inhibitors for highly validated oncology targets such as K-Ras, Mcl-1, and WDR5 (Please see: https://lab.vanderbilt.edu/fesik-lab/ <https://lab.vanderbilt.edu/fesik-lab/>). > > Postdocs in our group will have the opportunity to learn and apply cutting edge fragment-based methods and structure-based approaches to design analogs of hit molecules to improve binding affinities. The close collaborations between synthetic chemists, cancer biologists, and structural biologists in our group will provide excellent training in drug discovery in a team environment. > > The ideal candidate will have a Ph.D. in NMR or X-ray crystallography with experience in the cloning and purification of proteins for structure determination. If you have a student that fits these criteria, please have them provide a cover letter describing their relevant experience, a curriculum vitae, and a short research summary of their work to stephen.fesik(a)vanderbilt.edu <mailto:stephen.fesik@vanderbilt.edu>. > > If you know of a colleague that may have an interested student, please feel free to forward this contact info to them as well. > > Sincerely, > Steve > > Stephen W. Fesik, Ph.D. > Professor of Biochemistry, Pharmacology, and Chemistry > Orrin H. Ingram, II Chair in Cancer Research > Vanderbilt University School of Medicine > 2215 Garland Ave, 607 Light Hall > Nashville, TN 37232-0146 > > Office: 634 RRB > Phone: (615) 322-6303 > Fax: (615) 875-3236 > Email: stephen.fesik(a)vanderbilt.edu <mailto:stephen.fesik@vanderbilt.edu> > Website: Fesik Lab <http://www.mc.vanderbilt.edu/fesiklab> > > >

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[Compbio-allhands] Fwd: Open position in my lab
by Andrej Sali 07 Jun '20

07 Jun '20

> Begin forwarded message: > > From: "Brock, Oliver" <oliver.brock(a)tu-berlin.de> > Subject: Open position in my lab > Date: June 7, 2020 at 10:52:07 AM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Andrej, > > I hope you and the people close to you are well in these complicated times! > > I am one of Juri Rappsilber's collaborators. In the middle of these crises, I am attempting to fill a position in my lab for a computational biology PhD student with five years of funding. I would greatly appreciate if you could pass along this information to interested parties. I am including brief instructions on how to apply below. > > Thanks for your help! > > Best regards, > Oliver > > ------------- > > Link to the official job ad: > https://tub.stellenticket.de/de/offers/80437/?ids=t281 > > If you are interested in applying: Please email your application as a single PDF file to robotics(a)robotics.tu-berlin.de, specifying IV-302/20 in the subject line. In the PDF file, please include a cover letter explaining your motivation and relevant qualifications, CV, selected publications and/or MS thesis, references, transcripts, and degree certificates. >

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[Compbio-allhands] 5/7/2020 BBC Seminar with Polly Fordyce, PhD
by Flowers, Nicole 29 Apr '20

29 Apr '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_1992348… Password: 266055 Polly Fordyce, Ph.D. Stanford Leveraging microfluidics for high-throughput biophysics, biochemistry, and single-cell biology May 7, 2020 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Tenure-Track Faculty Position at the University of Zurich
by Andrej Sali 01 Apr '20

01 Apr '20

fyi > Begin forwarded message: > > From: "Ben Schuler" <schuler(a)bioc.uzh.ch> > Subject: Tenure-Track Faculty Position at the University of Zurich > Date: April 1, 2020 at 1:25:06 PM PDT > To: Ben <schuler(a)bioc.uzh.ch> > > > Dear Friends and Colleagues, > > Thank you for spreading the word about the tenure-track assistant professor position at our department at the University of Zurich (https://www.nature.com/naturecareers/job/tenuretrack-assistant-professor-in…) Since the question has come up recently, I would like to confirm that the hiring process will continue as planned in spite of the current situation, with a deadline of April 20. I would be grateful if you could pass on this information to potential candidates. > > Thank you very much and best wishes, > > Ben > > > > ____________________________________________________ > > Ben Schuler, PhD > Professor of Molecular Biophysics > Chair, Department of Biochemistry > University of Zurich > > Winterthurerstr. 190, 8057 Zurich, Switzerland > Tel: +41 44 635 5535, Fax: +41 44 635 5907 > Web: http://www.bioc.uzh.ch/schuler > Email: schuler(a)bioc.uzh.ch

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[Compbio-allhands] Fwd: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19
by Andrej Sali 23 Mar '20

23 Mar '20

fyi > Begin forwarded message: > > From: "Guglielmo, B Joseph" <BJoseph.Guglielmo(a)ucsf.edu> > Subject: Fwd: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 > Date: March 22, 2020 at 6:52:10 PM PDT > To: "SALI, ANDREJ" <sali(a)salilab.org>, "Krogan, Nevan" <Nevan.Krogan(a)ucsf.edu>, Matthew Jacobson <matthewpjacobson(a)gmail.com>, "Desai, Tejal" <Tejal.Desai(a)ucsf.edu> > > > > Sent from my iPad > > Begin forwarded message: > >> From: "Kiser, Gretchen" <Gretchen.Kiser(a)ucsf.edu> >> Date: March 22, 2020 at 6:38:33 PM PDT >> To: "FUNDING_OPPS(a)LISTSRV.UCSF.EDU" <FUNDING_OPPS(a)LISTSRV.UCSF.EDU> >> Subject: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 >> Reply-To: "Kiser, Gretchen" <Gretchen.Kiser(a)UCSF.EDU> >> >> >> >> >> THE WHITE HOUSE >> Office of Science and Technology Policy >> >> FOR IMMEDIATE RELEASE >> March 22, 2020 >> >> White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 >> >> Today, The White House announced the launch of the COVID-19 High Performance Computing Consortium <https://urldefense.proofpoint.com/v2/url?u=http-3A__covid19-2Dhpc-2Dconsort…> to provide COVID-19 researchers worldwide with access to the world’s most powerful high performance computing resources that can significantly advance the pace of scientific discovery in the fight to stop the virus. >> >> This unique public-private consortium, spearheaded by The White House Office of Science and Technology Policy, IBM, the U.S. Department of Energy, and the National Science Foundation, includes the following government, industry, and academic leaders who have volunteered free compute time and resources on their machines: >> >> Industry >> IBM >> Amazon Web Services >> Google Cloud >> Microsoft >> Hewlett Packard Enterprise >> Academia >> Massachusetts Institute of Technology >> Rensselaer Polytechnic Institute >> U.S. Department of Energy National Laboratories >> Argonne National Laboratory >> Lawrence Livermore National Laboratory >> Los Alamos National Laboratory >> Oak Ridge National Laboratory >> Sandia National Laboratories >> Federal Agencies >> National Science Foundation >> NASA >> >> Researchers are invited to submit COVID-19 related research proposals to the consortium via the online portal <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.xsede.org_covid19-…> which will then be reviewed and matched with computing resources from one of the partner institutions. An expert panel of top scientists and computing researchers will work with proposers to quickly assess the public health benefit of the work and coordinate the allocation of the group’s powerful computing assets. >> >> The COVID-19 High Performance Computing Consortium currently pools 16 systems that together offer over 330 petaflops of supercomputing capacity. Additional capacity, including cloud computing resources, will be added through present and future partners. >> >> The sophisticated computing systems available through this Consortium can process massive numbers of calculations related to bioinformatics, epidemiology, molecular modeling, and healthcare system response, helping scientists develop answers to complex scientific questions about COVID-19 in hours or days versus weeks or months. >> >> “America is coming together to fight COVID-19, and that means unleashing the full capacity of our world-class supercomputers to rapidly advance scientific research for treatments and a vaccine. We thank the private sector and academic leaders who are joining the federal government as part of the Trump Administration’s whole-of-America response,” said Michael Kratsios, U.S. Chief Technology Officer. >> >> FEDERAL AGENCY PARTNERS >> >> “Under the Trump Administration, the United States has regained its position as the dominant global force in Supercomputing technology. The Department of Energy is home to the world’s fastest and most powerful supercomputers, and we are excited to partner with leaders across the scientific community who will use our world class innovation and technology to combat COVID-19,” said U.S. Energy Secretary Dan Brouillette. >> >> “The Department of Energy’s National Labs have made profound advancements towards combatting COVID-19,” said U.S. Department of Energy (DOE) Under Secretary for Science Paul Dabbar. “By providing researchers access to world leading technology here in our own backyard, we take an additional leap towards ending this pandemic. We look forward to collaborating with scientists and researchers to bring an end to COVID-19.” >> >> “The National Nuclear Security Administration is eagerly lending its world-class supercomputing resources to combat COVID-19 in collaboration with OSTP and other agencies,” said Lisa E. Gordon-Hagerty, DOE Under Secretary for Nuclear Security and NNSA Administrator. “Ten NNSA supercomputers will be available, empowering researchers to understand the COVID-19 virus, develop treatments and vaccines, and ultimately bring an end to this pandemic.” >> >> “The National Science Foundation is pleased to join the COVID-19 HPC Consortium to enhance access to the Nation’s leading HPC resources, including the NSF-funded Frontera supercomputer, the world’s most powerful HPC system deployed on an US academic campus,” said France Cordova, Director of the National Science Foundation. “Frontera and other NSF-funded advanced computing resources will enable the Nation’s science and engineering community to pursue data science, computational modeling, and artificial intelligence approaches to help us accelerate our understanding of COVID-19 and strategies for responding to the pandemic.” >> >> “We are pleased to lend NASA’s supercomputing expertise to assist in the global fight against this pandemic. For more than six decades the agency has used its expertise to take on challenges that have benefited people worldwide in unexpected ways,” said Jim Bridenstine, NASA Administrator. >> >> INDUSTRY PARTNERS >> >> “Accelerating the process of discovery to unlock treatments and a cure for COVID-19 is of vital importance to us all. By bringing together the world's most advanced supercomputers and matching them with the best ideas and expertise, this consortium can drive real progress in this global fight. IBM is proud to have helped kick-start this important effort," said Dario Gil, Director of IBM Research. >> >> “We know that high performance computing can reduce the time it takes to process massive data sets and perform complex simulations from days to hours,” said Mike Daniels, Vice President, Global Public Sector at Google Cloud. “We look forward to participating in this initiative alongside leaders in technology, academia, and the public sector to make more resources available to COVID-19 researchers and to apply Google Cloud computing capabilities toward the development of potential treatments and vaccines.” >> >> “We want to make sure researchers working to combat COVID-19 have access to the tools they need. Through our AI for Health program we’ve seen first-hand the impact of empowering talented researchers with powerful technology. We hope that by expanding access to the Azure cloud and High Performance Computing capabilities, and by creating more opportunities to collaborate with our own data scientists, we can help accelerate this important work,” said John Kahan, Microsoft Global Head, AI for Health Program. >> >> “We’re proud to support this critical work and stand ready with the compute power of AWS to help accelerate research and development efforts,” said Teresa Carlson, Vice President, Worldwide Public Sector at AWS. “Working together, government, business, and academic leaders can utilize the power of the cloud to advance the pace of scientific discovery and innovation, and help combat the COVID-19 virus.” >> >> ACADEMIC PARTNERS >> >> “In order to combat the devastating effects of this pandemic, we must be able to fully grasp the complexities and interconnectedness of biological systems and epidemiological data, as researchers work to develop therapeutic interventions and address gaps in our knowledge,” said Rensselaer President Shirley Ann Jackson. “This effort requires expertise, collaboration, and the ability to process incredible amounts of data, and Rensselaer is offering all three at this critical time. In particular, the ability to model at very large scales requires the unique capabilities of AiMOS.” >> >> "Computing and AI have a major role to play in bringing Covid-19 under control," said Christopher Hill, head of MIT’s research computing infrastructure. "We want to do our part by making MIT's two most powerful machines, Satori and TX-GAIA, available to researchers who are racing to understand the virus, model the outbreak, and accelerate drug discovery and design. This will be a team effort, and we hope our actions will inspire others to throw their computing power and brain power at the virus." >> >> >> >> Use this link to unsubscribe <http://listsrv.ucsf.edu/cgi-bin/wa?SUBED1=FUNDING_OPPS&A=1> from this mailing list. >>

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[Compbio-allhands] Fwd: Summer Internship in Computer-Aided Drug Design at Genentech
by Michael Keiser 18 Mar '20

18 Mar '20

FYI ---------- Forwarded message --------- From: Paul Beroza <beroza.paul(a)gene.com> Date: Tue, Mar 17, 2020 at 9:10 AM Subject: Summer Internship in Computer-Aided Drug Design at Genentech To: Paul Beroza <berozap(a)gene.com> I hope this email finds you well, in spite of all the corona-craziness going on. I could use your help. I have a summer intern position I'm trying to fill and am looking for candidates. The position would involve developing methods and workflows for virtual library screening. Brief description here: 2020 Comp Chem Internship at Genentech <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> We are focusing on undergraduates but are considering all student levels. If you could recommend someone or pass the link on to those who might be interested, I'd appreciate it. I need to identify a candidate before the end of the month (yes, this month...), so we need to move quickly. Thanks for the help and best regards! Paul <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> -- Paul Beroza, Ph.D. Computational Drug Discovery, Genentech -- Michael J Keiser, PhD Assistant Professor, UCSF Chan Zuckerberg Initiative Ben Barres Investigator Paul G. Allen Frontiers Group Distinguished Investigator Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Kavli Institute for Fundamental Neuroscience Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: FW: Please help us spread the word on the Innovation Fellowship
by Brian Shoichet 12 Mar '20

12 Mar '20

FYI. These postdoctoral fellowships pay well, expose people to a drug discovery environment, and have a good reputation for training. ---------- Forwarded message --------- From: Urban, Laszlo <laszlo.urban(a)novartis.com> Date: Thu, Mar 12, 2020 at 7:39 AM Subject: FW: Please help us spread the word on the Innovation Fellowship To: Brian Shoichet (bshoichet(a)gmail.com) <bshoichet(a)gmail.com>, bryan_roth(a)med.unc.edu <bryan_roth(a)med.unc.edu>, Amanda Chen <axchen(a)mit.edu>, Robert Ietswaart <robertietswaart(a)gmail.com>, Seda Arat <seda8arat(a)gmail.com>, BUMJUN KIM <bumjunebjkim(a)gmail.com>, Saman Farahmand < saman.farahmand001(a)umb.edu> Dear All, I am asking for a favor. We have Innovation Fellow applications open until April 14th in Cambridge, MA and April 24th in Basel and looking for talented people who would consider this opportunity. In case you know people who would be interested, please send them the links below. “The Novartis Innovation Postdoctoral Fellowship offers aspiring drug hunters a unique opportunity to join our teams at the Novartis Institutes for BioMedical Research (NIBR), the innovation engine of Novartis. Mentored by experienced NIBR scientists, Innovation Fellows will gain first-hand experience in the design and development of breakthrough therapies and innovative technologies. We are looking for Innovation Fellows who will harness their scientific creativity and natural curiosity to help bring transformative treatments to patients. Join us as we reimagine medicine together. Program duration: 2-3 years.” Here are a few links: LinkedIn (Cambridge application): https://www.linkedin.com/jobs/search/?currentJobId=1738923966&geoId=1036442… ) LinkedIn (Basel application): https://www.linkedin.com/jobs/search/?geoId=106693272&keywords=novartis%20i… ) Brassring: *Apply - Cambridge* <https://www.novartis.com/careers/career-search/job-details/288900BR> *Apply - Basel* <https://www.novartis.com/careers/career-search/job-details/289991BR> External postdoc program website, which includes details on the program and links to the BrassRing ads: https://www.novartis.com/our-science/postdoc-program/novartis-innovation-po… Thanks in advance for your help! All the best, Laszlo -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] CANCELLED! Re: 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402**
by Flowers, Nicole 06 Mar '20

06 Mar '20

Unfortunately, this talk has been cancelled. We’re hoping to reschedule Dr. Shapiro for a later date. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518 From: "Flowers, Nicole" <Nicole.Flowers(a)ucsf.edu> Date: Friday, March 6, 2020 at 9:01 AM To: "bpstudents(a)listserv.ucsf.edu" <bpstudents(a)listserv.ucsf.edu>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU>, CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU>, "bbcfaculty(a)listserv.ucsf.edu" <bbcfaculty(a)listserv.ucsf.edu> Subject: 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402** BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Mission Hall 1401/1402 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function March 12, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402**
by Flowers, Nicole 05 Mar '20

05 Mar '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Mission Hall 1401/1402 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function March 12, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 3/5/2020 BBC Seminar with Demet Araç
by Flowers, Nicole 02 Mar '20

02 Mar '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Demet Araç, Ph.D. University of Chicago Cellular Communication via Adhesion in the Nervous System October 5, 2020 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Any Ph.D. student looking for a postdoc in CA?
by Brian Shoichet 02 Mar '20

02 Mar '20

FYI. brian ---------- Forwarded message --------- From: Vsevolod Katritch <katritch(a)usc.edu> Date: Sun, Mar 1, 2020 at 5:36 PM Subject: Any Ph.D. student looking for a postdoc in CA? To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Dear Brian, How are you doing? May I ask you for a favor? I am looking for a computational postdoc now (see attached), and was wondering if you know any bright PhD student graduating soon and applying for a position? If you do, please send them my way, I know your students are good! BTW, very proud of my alumni postdoc placements last year – two got tenure track faculty positions, one scientist in Genentech, one in Schoedinger… Thank you, Seva -------------------------------------------------- Vsevolod “Seva” Katritch, Ph.D. Asst. Professor of Biological Sciences and Chemistry University of Southern California Dana and David Dornsife College of Letters, Arts and Sciences Michelson Center for Convergent Bioscience The Bridge Institute 1002 West Childs Way, MCB-317 Los Angeles, CA 90089 Tel: 213-821-1488 http://katritch.usc.edu katritch(a)usc.edu -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Two open computational chemistry positions at Genentech
by Jacobson, Matt 28 Feb '20

28 Feb '20

— Matt Begin forwarded message: From: Ben Sellers <sellers.benjamin(a)gene.com<mailto:sellers.benjamin@gene.com>> Subject: Two open computational chemistry positions at Genentech Date: February 26, 2020 at 2:40:21 PM PST To: Matthew Jacobson <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt: I hope you are doing well. I’m writing to inform you that we have two exciting openings in the computational modeling group at Genentech. We’d appreciate your referring any enthusiastic candidates or your forwarding this email to anyone who might be interested. Those interested should start by applying online at the links below. The links also have more detail about the two positions. Computational Chemist This scientist position will use state-of-the-art modeling methods to work with chemists to discover and optimize new drugs for challenging diseases. https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d…> Computational Chemist - Early lead finding This scientist position will also perform modeling but focus primarily on target validation and lead finding, using bioinformatics, cheminformatics, virtual screening, etc. https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d…> Thank you for your time. -Ben -- Ben Sellers, PhD Senior Scientist Discovery Chemistry Genentech, Inc. sellers.benjamin(a)gene.com<mailto:sellers.benjamin@gene.com>

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[Compbio-allhands] 2/27/2020 Seminar with Barry Honig, PhD **HD 160**
by Flowers, Nicole 26 Feb '20

26 Feb '20

Just a reminder that today’s seminar is in HD 160! BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller 160 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Barry Honig, Ph.D. Columbia University The molecular basis of cell-cell recognition: Cellular patterning and nervous system wiring February 27, 2020 T. Kortemme, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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