- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium | September 6, 2018 at UCSF Mission Bay
by Anat Levit 28 Aug '18

28 Aug '18

*The COMP Together champions in collaboration with PH-OCS talks would like to announce the following event:* Speaker: Bill Shirley (Novartis), Mika Lindvall (Novartis), John Irwin (UCSF) Title: Talks & Posters by COMP Together & UCSF Pharm Postdocs Date: 2018-09-06 Time: 6:00 PM Event ID: 40 Sponsor: Genentech Location UCSF 1700 4th St. UCSF Mission Bay GH-N114 San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) *Schedule:* * 6-7 pm: Networking and posters (pizza and drinks provided) 7 – 7:30 pm: Talk #1 Title: Accelerated chemical inspiration from NibrHops push messages Speakers: Bill Shirley and Mika Lindvall (Novartis) 7:30 – 8.00 pm: Talk #2 Title: Ligand discovery by docking large and growing libraries Speaker: John Irwin (UCSF)* 8-9 pm: Opportunity for extended discussion and networking *We encourage attendees to propose a poster for presentation.* Posters can be put up at 6 pm and stay up through the extended discussion period after the talks. Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together": johanna.jansen(a)novartis.com, wei.binqing(a)gene.com, Uli.Schmitz(a)gilead.com, an.levit(a)gmail.com Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_ parking If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=40. If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/ update_login.php

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[Compbio-allhands] Fwd: Hiring a postdoc in the Shirts Research Group at CU Boulder
by Jacobson, Matt 28 Aug '18

28 Aug '18

— Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Hiring a postdoc in the Shirts Research Group at CU Boulder Date: August 23, 2018 at 3:06:01 PM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Hello, colleagues- I am still in the process of hiring a postdoctoral researcher to do fundamental theoretical and computational work towards understanding and designing secondary structure in general non-peptidic oligomers. I think this is an exciting project (it's probably the new direction I'm most interested in in my group!) with lots of potential directions that someone could take in independent research projects afterwards. I am open to people who might be graduating/finishing later this the fall; there may be some additional candidates who were not ready this summer when I first announced the search who might be interested now. I would love if you could pass this on to any students/former students/junior researchers you think might be good candidates. The job description and direct link to apply is below. I'm happy to answer any questions that anyone you may refer might have. Note: the CU application requires a letter of recommendation, but that does not need to be uploaded initially; that can be uploaded as a confidential letter of recommendation later in the process by me. The job number is #13828 at https://cu.taleo.net/careersection/2/moresearch.ftl. Direct Link is: https://cu.taleo.net/careersection/2/jobdetail.ftl?job=13828&lang=en&sns_id… Job Description: The Shirts research group in the Department of Chemical and Biological Engineering at University of Colorado Boulder is hiring a research associate to help develop guidelines, based on fundamental physical principles, by which short nonbiological heteropolymers with sequence specificity can fold into secondary structure elements. The candidate will also study what governs the relative stability between these allowed secondary structural elements. Initial studies will pave the way for more extensive and realistic modeling of the proposed heteropolymers, working with our experimental collaborators. The research effort is intended to build towards tools for designing human-engineered foldameric materials with a much larger range of properties and functions than occur in naturally occurring biological heteropolymers such as proteins. This position requires a Ph.D. in chemistry, chemical engineering, physics or a related field, and exceptionally strong skills in statistical mechanics and molecular simulation. Other potential (but not required) qualifications of interest include Python expertise and experience with protein design algorithms. Competitive candidates will have a track record of scientific success in graduate study, creative and innovative thinking, experience working on teams, excellent writing skills, and a strong publication record. Best, ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] Fwd: Group Leaders in Cell Biology and Biophysics
by Andrej Sali 23 Aug '18

23 Aug '18

> Begin forwarded message: > > From: "Jan Ellenberg" <jan.ellenberg(a)embl.de> > Subject: Group Leaders in Cell Biology and Biophysics > Date: August 23, 2018 at 12:11:32 PM PDT > To: sali(a)salilab.org > > Dear Andrej, > > I would like to draw your attention to the opening for a group leader position in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry, engineering or mathematics that want to pursue original and interdisciplinary research in cutting edge molecular cell biology and/or technology development in the areas of imaging technology and computational modelling of dynamic cell biological processes. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > Jan > > Dr. Jan Ellenberg > > Head, Cell Biology and Biophysics Unit > > European Molecular Biology Laboratory (EMBL) > > Meyerhofstr. 1 > > D-69117 Heidelberg > > Germany > > > T +49-6221-387-8391 > > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> >

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[Compbio-allhands] Fwd: Opportunity for a postdoctoral position in London
by Andrej Sali 16 Aug '18

16 Aug '18

Sent from my iPad Begin forwarded message: > From: Maya Topf <m.topf(a)cryst.bbk.ac.uk> > Date: August 15, 2018 at 8:49:40 PM PDT > To: Maya Topf <m.topf(a)mail.cryst.bbk.ac.uk> > Subject: Opportunity for a postdoctoral position in London > > Dear friends and colleagues, > > Could you please forward this email to anyone at your research institutions who could be interested in a 2.5 year postdoctoral position in computational biology (with potential extension to 5 years) at Birkbeck College and UCL? > > Detailed information can be found here: > > https://www.jobs.ac.uk/job/BMC050/postdoctoral-researcher-in-computational-… > > Many thanks! > Maya > > > > > -------------- > Maya Topf > Professor in Structural and Computational Biology > Biological Sciences > Institute of Structural and Molecular Biology at Birkbeck/UCL > University of London > Malet St., London WC1E 7HX > Tel: +44 (0)20 7079 0886 > http://people.cryst.bbk.ac.uk/~ubcg67a > > >

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[Compbio-allhands] Fwd: EIPOD postdoctoral fellowships at EMBL
by Andrej Sali 10 Aug '18

10 Aug '18

Begin forwarded message: > > From: Jan Kosinski <jan.kosinski(a)embl.de> > Subject: EIPOD postdoctoral fellowships at EMBL > Date: August 10, 2018 at 12:15:14 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > I am looking for candidates who would like to apply with my group for the Interdisciplinary Postdoc Fellowship programme (EI3POD) fellowship at EMBL. If you think it could be interesting to someone from your lab or in your network, I would be grateful for forwarding this e-mail. > > The EI3POD fellowships are funded by EMBL and a grant from the EC’s Marie Skłodowska-Curie actions COFUND programme and provide funding for a three-year position. Applicants design and submit interdisciplinary research project involving two or more groups from the six EMBL sites. Additional external partners from academia or industry may also participate as defined by the research interests of the fellows. > > Research areas that currently are relevant for my group are: 1) integrative structure modeling based on EM and other data of protein complexes, viral genomes, and viral particles, 2) analyses of the nuclear pore complex, 3) systems biology and pathway modeling of infection cycles, 4) cell and molecular biology of influenza virus infection in our wet-lab. We would provide training in integrative structure modeling, interpretation of electron microscopy and other data, and, through EIPOD project partners, other techniques at EMBL. > > The details of the EIPOD programme: > https://www.embl.de/training/postdocs/08-eipod/application/index.html <https://www.embl.de/training/postdocs/08-eipod/application/index.html> > > About Kosinski group: > http://www.embl-hamburg.de/research/unit/kosinski/index.html <http://www.embl-hamburg.de/research/unit/kosinski/index.html> > > Best, > Jan > > — > Jan Kosinski > Group leader at European Molecular Biology Laboratory (EMBL) > Joint appointment Structural and Computational Biology Unit EMBL Heidelberg > Group leader at Centre for Structural Systems Biology (CSSB) > > c/o DESY, Building 15 (CSSB), Room 02.247 > Notkestraße 85 > 22607 Hamburg, Germany > Phone: +49 (0)40 8990 2787573 > http://www.embl-hamburg.de/research/unit/kosinski/ <http://www.embl-hamburg.de/research/unit/kosinski/> > http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html <http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html> > > -- > Group leader at European Molecular Biology Laboratory (EMBL) > Joint appointment Structural and Computational Biology Unit EMBL Heidelberg > Group leader at Centre for Structural Systems Biology (CSSB) > > c/o DESY, Building 15 (CSSB), Room 02.247 > Notkestraße 85 > 22607 Hamburg, Germany > Phone: +49 (0)40 8990 2787573 > http://www.embl-hamburg.de/research/unit/kosinski/ <http://www.embl-hamburg.de/research/unit/kosinski/> > http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html >

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[Compbio-allhands] Fwd: Computational protein engineer position
by Jacobson, Matt 17 Jul '18

17 Jul '18

— Matt Begin forwarded message: From: JW Feng <feng(a)dnli.com<mailto:feng@dnli.com>> Subject: Computational protein engineer position Date: July 16, 2018 at 1:19:56 PM PDT To: "Jacobson, Matt" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, I am looking for a scientist to lead antibody modeling and developability assessment. Would you mind sharing this job description with your network and help me advertise the opening? Thanks, JW ___________________ JW Feng, Ph.D. Denali Therapeutics Inc. 151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080 CONFIDENTIALITY NOTICE: This email message and any attachments are intended solely for the addressee(s) and may contain confidential information or may be legally protected from disclosure. If you are not the intended recipient of this message, or if this message has been addressed to you in error, please immediately alert the sender by reply email and then delete this message and any attachments.

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[Compbio-allhands] Fwd: Career Fair Tomorrow for Bioinformatics Students & Alumni
by Jacobson, Matt 25 Jun '18

25 Jun '18

— Matt Begin forwarded message: From: Charles Howell <chowell(a)CareerMD.com<mailto:chowell@CareerMD.com>> Subject: Career Fair Tomorrow for Bioinformatics Students & Alumni Date: June 25, 2018 at 12:44:09 PM EDT To: <matt.jacobson(a)UCSF.EDU<mailto:matt.jacobson@UCSF.EDU>> Good morning, Students (and alumni) in Bioinformatics, Quantitative Biology, and Computational Biology training programs are invited to participate in the CMDscience Virtual Career Fair<http://www.careermd.com/science>, taking place online tomorrow, Tuesday, June 26. This invitation-only digital event offers your busy trainees an opportunity to learn about Bioinformatics employment opportunities at numerous life science and engineering companies across the country -- all from the convenience of their phones, laptops, or tablets. Participants may log into this Career Fair any time between 6am and midnight tomorrow. Would you please forward this invitation to the students, alumni, and quantitative biologists in your department so that they may sign up for the Career Fair? Anyone who would like to participate is asked to email me at chowell(a)CareerMD.com<mailto:chowell@CareerMD.com> with their name, degree program, and year of graduation to receive login instructions for tomorrow's event. Please contact me if you or your trainees have questions about this online Career Fair. Thank you, Charles Howell CMDscience | CareerMD 41 East 11th Street New York, NY 10003 (800) 355-2626 chowell(a)CareerMD.com<mailto:chowell@CareerMD.com>

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[Compbio-allhands] Fwd: Hiring a postdoc in the Shirts Research Group
by Jacobson, Matt 09 Jun '18

09 Jun '18

— Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Hiring a postdoc in the Shirts Research Group Date: June 8, 2018 at 12:34:49 PM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Hello, friends and colleagues- My group is now hiring a postdoctoral researcher to do fundamental theoretical and computational work towards understanding and designing secondary structure in general non-peptidic oligomers. This should be an exciting project (it's perhaps the new direction I'm most interested in in my group!) with lots of potential places to take independent research afterwards. I would love if you could pass this on to any students/former students/junior researchers you thought would be good candidates. The job description and direct link to apply is below. I'm happy to answer any questions that anyone you are thinking of referring might have. Note: For strange reasons, the CU application requires a non-confidential letter of recommendation. This can consist of a letter that describes the relationship to the applicant, but then states any additional information will be sent directly to me upon request. The job number is #13828 at https://cu.taleo.net/careersection/2/moresearch.ftl. Direct Link is: https://cu.taleo.net/careersection/2/jobdetail.ftl?job=13828&lang=en&sns_id… Job Description: The Shirts research group in the Department of Chemical and Biological Engineering at University of Colorado Boulder is hiring a research associate to help develop guidelines, based on fundamental physical principles, by which short nonbiological heteropolymers with sequence specificity can fold into secondary structure elements. The candidate will also study what governs the relative stability between these allowed secondary structural elements. Initial studies will pave the way for more extensive and realistic modeling of the proposed heteropolymers, working with our experimental collaborators. Research effort is intended to build towards tools for designing human-engineered foldameric materials with a much larger range of properties and functions than occur in naturally occurring biological heteropolymers such as proteins. This position requires a Ph.D. in chemistry, chemical engineering, physics or related field, and exceptionally strong skills in statistical mechanics and molecular simulation. Other qualifications of interest include Python expertise and experience with protein design algorithms. Competitive candidates will have a track record of scientific success in graduate study, creative and innovative thinking, experience working on teams, excellent writing skills, and a strong publication record. Best, ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] 5/31/18 Seminar with Andre Levchenko
by Flowers, Nicole 22 May '18

22 May '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Andre Levchenko Yale Are signaling networks Rube Goldberg machines? Information Processing v. Network Structure May 31, 2018 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] two comp bio postdoc positions at A*STAR institute in Singapore
by Andrej Sali 20 May '18

20 May '18

http://www.bii.a-star.edu.sg/career/research/bmad.php -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 5/17/18 Seminar with Tom Rapoport
by Flowers, Nicole 14 May '18

14 May '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Tom Rapoport Harvard Mechanism of ER-associated protein degradation (ERAD) May 17, 2018 A. Frost, Host -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Hello Tom from Wayne in Chicago
by Tom Ferrin 04 May '18

04 May '18

LanzaTech is recruiting for a Computational Biologist Modeler... -------- Forwarded Message -------- Subject: Hello Tom from Wayne in Chicago Date: Wed, 2 May 2018 14:33:26 +0000 From: Wayne Mitchell <Wayne.Mitchell(a)lanzatech.com> To: tef(a)cgl.ucsf.edu <tef(a)cgl.ucsf.edu> Tom, we are expanding the Computational Biology team, and I thought you might know of strong candidates. We are a modest group of five (3 PhDs, 1 double Masters, 1 BS), doing wide-rangeing computational biology in support of Lanzatech’s microbial technology platform, in particular the synthetic biology, strain development and fermentation teams. Our organism is aenerobic, acetogenic and gas fermenting. The biology is somewhat esoteric but always interesting. We do bacterial evolution and population biology in the context of continuous fermentation, RNAseq, proteomics, and metabolics in pursuit of systems biology insights, extensive annotation and bioinformatics analysis of genomes of interest, software application development, more “hard core” information science stuff (database design and implementation, etc), and genome scale mathematical modeling of metabolism. In addition we have a growing focus on statistical computing (AI and machine learning) Specifically, we are expanding our modelling efforts and are actively recruiting a second fulltime genome scale metabolic modeller. I include the job posting (below), Applications can be lodged at http://www.lanzatech.com/careers/ Feel free to foward this if you think it will be of interest to your network, ( We are also recruiting for a full stack web developer with scientiic visualization experience/ aspirations — just in case you know of one). Thank you If you are going to be at ISMB this summer, lets grab a beer and lunch/ dinner. warmest regards, Wayne Wayne Mitchell, PhD. Director, Computational Biology Lanzatech Computational Biologist Modeler LanzaTech Inc. - Skokie, IL - Full Time _*About LanzaTech*_ LanzaTech is turning our global carbon crisis into a feedstock opportunity with the potential to displace 30% of crude oil use today and reduce global CO2 emissions by 10%. LanzaTech’s carbon recycling technology is like retrofitting a brewery onto an emission source like a steel mill, but instead of using sugars and yeast to make beer, bacteria convert pollution to products! Imagine a day when you can power a plane by recycled carbon emissions, when your yoga pants or sneakers started life as pollution from a steel mill. This future is possible using LanzaTech technology with the first 2 commercial units converting steel mill waste gases to fuels being built; in China with Shougang and in Belgium with the world’s largest steel maker, ArcelorMittal. LanzaTech has an additional 3 commercial projects in the pipeline, in India, South Africa and California. LanzaTech has already produced synthetic jet fuel from recycled carbon emissions and has a partnership with Virgin Atlantic. In 2017, LanzaTech was recognized as the #1 Hottest company in the Advanced Bioeconomy by Biofuels Digest, the world’s most widely-read bioeconomy daily. The company was also inaugurated into the Cleantech100 Hall of Fame, having been listed in the top 100 cleantech companies over the last 7 years. In 2016, the company won the Young Global Leader Award for Circular Economy at the World Economic Forum, LanzaTech was also the top biofuels company in the 2016 CNBC Disruptor 50 Companies list. In 2015, LanzaTech was awarded the U.S. EPA Presidential Green Chemistry Award for Greener Synthetic Pathways. The company’s accomplishments were recognized through a number of prestigious awards in 2014, including the Guardian Sustainable Business Innovation Award for Carbon and Energy Management, Breakthrough Innovation Award at the Platts Global Metals Awards, and the Technical Development Award from the World Petroleum Council. In 2013, the company was named a World Economic Forum Technology Pioneer. _*About the role*_ LanzaTech has developed extensive metabolic modeling capability around our novel gas fermentation platform. This modeling capability is used to guide scientific, engineering and business decisions. You will use your expert knowledge of microbial metabolism to computationally design, develop and refine new microbial strains that specialize in making chemicals from pollution. You will participate in the design-build-test feedback loop with scientists and engineers across the company to refine these strain designs and contribute to the ongoing development and refinement of our models. *Key duties* * Integrate metabolomic, genomic, proteomic and transcriptomic data sets to solve deep biological problems * Contribute to ongoing development and refinement of genome annotations, metabolic knowledgebases and metabolic models * Design in silico experiments for biological discovery, computational strain design, process optimization and the prediction of cellular phenotypes. * Carry out in silico experiments using the latest metabolic modeling technology * Clearly document work and methods by integrating code and narrative text in Jupyter notebooks * Communicate your findings, insights and conclusions to other scientific teams * Present summary of results to group in weekly meetings _*Education & Experience*_ *REQUIRED* * PhD in computational biology, quantitative biology, bioinformatics, computational systems biology or equivalent * Strong knowledge of microbial biochemistry * Significant exposure to prokaryotic biology with emphasis on metabolism, ideally to a gas fermenting acetogen * Deep knowledge of the principles behind genome-scale modeling, flux balance analysis and associated techniques * Expert user of genome-scale modeling tools such as cobrapy, cameo, Escher, OptFlux, COBRA Toolbox * Intermediate Python knowledge or expert in another programming language * Team player balanced with strong individual initiative *NICE TO HAVE* * Industry experience highly desirable * Exposure to microbial fermentation highly desirable * Experience with Gurobi, CPLEX, TOMLAB * Experience with Docker, Kubernetes, Travis CI, Git * Experience designing interactive data visualizations using Bokeh, R Shiny or Tableau * Experience with ME and GEM-Pro genome-scale models, kinetic models and whole-cell models * Experience in synthetic biology /This position is open to candidates authorized to work in the United States on a full-time basis for any employer. LanzaTech is an Equal Employment Opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, gender, sexual orientation, gender identity or expression, national origin, age, genetic information, disability, or veteran status./ *Wayne Mitchell *PhD | *LanzaTech * Director, Computational Biology Wayne.Mitchell(a)lanzatech.com Phone: +1 (847) 324-2508 Mobile: +1 (847) 454-5388 8045 Lamon Ave, Suite 400, Skokie, IL 60077 http://www.lanzatech.com <http://www.lanzatech.com/> /The information in this e-mail and any attachments is confidential to LanzaTech. If you are not the intended recipient, you are not authorized to disclose, copy, distribute or retain this information. / P *Be carbon smart. Please consider the environment before printing this email *

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[Compbio-allhands] Fwd: Advertising a Joint OpenFF-XtalPi Distinguished Postdoctoral Fellowship
by Jacobson, Matt 04 May '18

04 May '18

— Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Advertising a Joint OpenFF-XtalPi Distinguished Postdoctoral Fellowship Date: May 3, 2018 at 11:36:31 AM PDT Cc: David Mobley <dmobley(a)uci.edu<mailto:dmobley@uci.edu>>, Lee-Ping Wang <leeping(a)ucdavis.edu<mailto:leeping@ucdavis.edu>>, "John Chodera" <john.chodera(a)choderalab.org<mailto:john.chodera@choderalab.org>>, "Gilson, Michael" <mgilson(a)ucsd.edu<mailto:mgilson@ucsd.edu>> Hello, colleagues- The Open Force Field Consortium (OpenFF, openforcefield.org<http://openforcefield.org>) and XtalPi, Inc. (xtalpi.com<http://xtalpi.com>) are seeking a postdoctoral fellow to perform cutting-edge research in a unique academic-industrial joint effort. The postdoctoral fellow will work with OpenFF and XtalPi to improve the accuracy of molecular mechanics force fields for predicting crystal structures and binding free energies. Please pass this opportunity on to any of your recent students or postdocs that might be interested. See the full ad here: http://www.ccl.net/cca/jobs/joblist/mess0044564.shtml This particular postdoctoral position has some interesting advantages such as 1) the opportunity to transition into an industrial position doing computational chemistry right afterwards, 2) the chance to work in a highly collaborative team setting, and 3) flexibility to be located at any of the participating academic institutions. OpenFF is an academic collaboration (based at UC Irvine / UC Davis / UC San Diego / Univ. Colorado Boulder / Sloan Kettering Institute in New York) that seeks to develop next-generation molecular mechanics force fields and associated parameterization software and data infrastructure. XtalPi is a pharmaceutical technology company founded in 2014 that is introducing revolutionary advances in drug research and development, and has established strategic partnerships with several major pharmaceutical companies and recently completed a Series B funding round with Sequoia, Tencent, and Google. Best, ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] 5/10/18 Seminar with Forest White
by Flowers, Nicole 02 May '18

02 May '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Forest White MIT Mechanisms of therapeutic resistance revealed by quantitative functional proteomics May 10, 2018 N. Jura, Host -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Recruiting Info Sessions in Bay Area - Please Share with Students & Alumni Interested in Academia
by Tom Ferrin 27 Apr '18

27 Apr '18

-------- Forwarded Message -------- Subject: Recruiting Info Sessions in Bay Area - Please Share with Students & Alumni Interested in Academia Date: Fri, 27 Apr 2018 02:53:17 -0400 From: North America Chinese Association of Science, Technology, and Commerce <nacastc(a)gmail.com> Dear Professor, I am reaching out on behalf ofJinan University (JNU) <http://english.jnu.edu.cn/>from Guangzhou, China, to request your help with sharing our recruiting info session events in Los Angeles and San Francisco to your students and network. The deans and HR directors from JNU are hosting a series of info sessions in California, where the closest to UCSF would be at UC Berkeley and Stanford University. We welcome UCSF students and alumni to RSVP and attend any of them. Please see details of the events and recruiting information at the end of the email. Because the university is hiring in a variety of disciplines in Medicine and Health Sciences, offering competitive salary and benefits, we believe it would be a great opportunity for your students and alumni who would like to seek employment overseas. Thank you very much for your kind consideration and our apologies for the extended email. We look forward to hearing from you. Best Regards, Chun Qiu Event Coordinator Email:nacastc@gmail.com <mailto:nacastc@gmail.com> --------------------Event Descriptions Below------------------------- One of the oldest and most ethnically diverse universities established in mainland China, Jinan University (JNU) is recruiting members or candidates of the “High-level Overseas Young Talents Program” as well as researchers and postdoctoral students from home and abroad. The disciplines we are hiring include the following: ** *Medicine and Health Sciences: *Pharmaceutical Science, Science of Chinese pharmacology, Basic Medical Science, Clinical Medicine, Chinese Medicine, Integrative Medicine, Stomatology, Public Health and Preventive Medicine, Sports Science, Nursing. *Engineering: *Materials Science and Engineering, Mechanics, Civil engineering, Architecture, Optical Engineering, Electrical Engineering, Electronic Science and Technology *Information Technology: *Computer Science and Technology, Information and Communication engineering, Cyberspace Security, Software engineering *Other (Biology, Physics, Chemistry, Math, Earth) Sciences: *Mathematics, Biology, Biomedical Engineering, Ecology, Environmental Science and Engineering, Chemistry, Physics, Food Science and Engineering. *Social Sciences and Arts:*Philosophy, Journalism, Chinese Language and Literature, China History, World History, Foreign Language and Literature, Theoretical Economics, Applied Economics, Business Management, Management Science, Public Administration, Psychology, Law, Politics, Marxist Theory, Art, and so on. *Meet the deans and HR directorfromJinan University to discuss more on working at JNU! * * Date & Time University Event Location 5/3/2018, 6:00-8:00 pm University of California, Los Angeles Sunset, 17-256 CHS Address: School of Public Health, 650 Charles E. Young Drive South, Los Angeles, CA 90095-1772 5/4/2018, 6:00-8:00 pm University of Southern California Trojan Presentation Room (STU) B3 *Address: 3601 Trousdale Parkway, Student Union B3, Los Angeles, CA 90089* 5/5/2018, 12:00-2:00 pm California Institute of Technology Spalding 113 1200 E California Blvd, Pasadena, CA 91125 5/6/2018, 5:30-7:30 pm Stanford University Tresidder Memorial Union, Cypress North Address: 459 Lagunita Drive, Stanford, CA 94305-2072 5/7/2018, 6:00-8:00 pm University of California, Berkeley Alumni House Sibley Room Address: 1 Alumni House, Berkeley, CA 94720 * */NOTE: Food and travel reimbursement for graduate students will be provided at the event. /* *Please RSVP Via: https://goo.gl/forms/25AkURZnG2qJALDr2 <https://goo.gl/forms/25AkURZnG2qJALDr2>* Jinan University offers work authorizations in China and a very competitive salary and benefits package to qualified talents. For more information, please take a look at the detailed *job descriptions and employer introduction*here: https://goo.gl/LqMNaA Our English website: english.jnu.edu.cn <http://english.jnu.edu.cn/> Prior to the event, attendees may send CV and sample of papers to otalents(a)jnu.edu.cn <mailto:otalents@jnu.edu.cn>. If you have any questions regarding the events, please do not hesitate to contact us by email at nacastc(a)gmail.com <mailto:nacastc@gmail.com>.

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[Compbio-allhands] 5/3/18 Seminar with Christopher Burge
by Flowers, Nicole 26 Apr '18

26 Apr '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Christopher Burge MIT Protein-RNA Interactions and RNA Processing May 3, 2018 H. Madhani, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Open positions in gene therapy
by Andrej Sali 21 Apr '18

21 Apr '18

Sent from my iPhone Begin forwarded message: > From: Christina Chaivorapol <cchaivorapol(a)audentestx.com> > Date: April 21, 2018 at 5:57:38 AM GMT+2 > To: "sali(a)salilab.org" <sali(a)salilab.org> > Subject: Open positions in gene therapy > > Hi Andrej, > > I currently have two open positions in my group at Audentes Therapeutics. One is a bioinformatics scientist position to analyze NGS data from research all the way through clinical trials, and the other is a wet bench scientist position to work on developing a wide range of NGS-based assays and methods. Both positions are in the gene therapy space. If you know of any enthusiastic, independent scientists that would like to work on cutting edge science that will have direct impact on patients, please have them apply to the appropriate positions below: > > https://audentestx.snaphire.com/jobdetails/ajid/2SGH7/Scientist-I-Bioinform… > https://audentestx.snaphire.com/jobdetails/ajid/ewWH7/Scientist-I-II-NGS,11… > > Thanks in advance for your help, > Christina > > -- > Christina Chaivorapol, Ph.D. > Director, Bioinformatics > > Audentes Therapeutics, Inc. > 600 California Street > 17th Floor > San Francisco, CA 94108 > mobile: +1-628-220-9588 > office: +1-650-834-9704 > email: cchaivorapol(a)audentestx.com

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[Compbio-allhands] 4/26/18 Seminar with Klaus Hahn
by Flowers, Nicole 18 Apr '18

18 Apr '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Klaus Hahn UNC Chapel Hill Building proteins to peek and poke at GTPase circuits in vivo April 26, 2018 X. Shu, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Senior Computational Chemist (CADD) at Atomwise
by Andrej Sali 17 Apr '18

17 Apr '18

Sent from my iPhone Begin forwarded message: > From: Adrian Stecula <adrian(a)atomwise.com> > Date: April 17, 2018 at 2:28:39 PM PDT > To: sali(a)salilab.org > Subject: Senior Computational Chemist (CADD) at Atomwise > > Hi Andrej. > I hope this email finds you well. A senior computational chemist position has opened up at Atomwise and I was wondering if you could pass on the information internally at UCSF. Candidates can apply directly on our website. > Thank you so much. > > _adrian > > Adrian Stecula, Ph.D. > Scientist > Atomwise | Better Medicines Faster > > > Senior Computational Chemist (CADD), Atomwise Inc, San-Francisco > We are looking for a senior computational chemist (CADD) to join our > production team. The production team is in charge of identifying > customer needs, implementing the most suitable solution, executing > projects using Atomwise technologies, and communicating results. > > Our customers are scientists; you should be, too. Results should be > considered guilty until proven innocent: sanity checking, skepticism, > problem-solving, analysis, and investigation are our constant companions. > You should be comfortable discussing and reasoning about projects with > the precision necessary to deliver what the customer needs, and possess > enough clear articulable pragmatism to get things done even in the face > of inevitable and unavoidable ambiguity. > > You will: > --------- > * Interact with customers to understand their project requirements > * Generate and analyze predictive results, and deliver these to our clients > * Communicate our results and capabilities through scientific publications > * Analyze, curate, and automate the processing of our biochemical databases > * Help to develop our modeling software > > Required Qualifications: > ------------------------ > * Ph.D. in chemistry, biology, bioinformatics, physics, or a related field > * +3 years of experience in Molecular Modeling: computational chemistry/biology > * Experience in Computer-Aided Drug Design: structure/ligand-based drug > design, docking, virtual screening, QSAR, pharmacophore modeling > * Comfortable on the Linux command-line > * Undergraduate knowledge of statistics > > Preferred Qualifications: > ------------------------- > * Good knowledge of Python, Perl, Bash, or related scripting languages > * Statistical modeling > * Knowledge of medicinal chemistry > * Experience with cloud computing environments (AWS/Azure/GCE) > > Compensation & benefits: > ------------------------ > * Competitive salary, commensurate with experience > * Stock compensation plan -- you will be an Atomwise co-owner > * Platinum health, dental, and vision benefits as well as an FSA > * 401k with 4% match > * Flexible work schedule > > *** Currently, we are not offering visa sponsorships for these positions, please only apply if eligible to work in the U.S ***. > > http://www.atomwise.com/careers/ > > > ᐧ

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[Compbio-allhands] 4/19/18 Seminar with Matt Simon
by Flowers, Nicole 13 Apr '18

13 Apr '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Matt Simon Yale Chemistry to study the dynamics of cellular RNA populations April 19, 2018 K. Shokat, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 4/12/18 Seminar with Rachel Green
by Flowers, Nicole 06 Apr '18

06 Apr '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 Rachel Green Johns Hopkins Medical Institute The role played by the ribosome in mRNA surveillance April 12, 2018 W. Li, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Some open positions to announce
by Scooter Morris 05 Apr '18

05 Apr '18

Hi all, Here is an announcement for some open positions for a new group at the ISSB laboratory, which is part of the French National Sequencing Centre in Illkirch, France. -- scooter

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[Compbio-allhands] Fwd: Please share around!
by John Irwin 05 Apr '18

05 Apr '18

Positions open at BioMarin ---------- Forwarded message --------- From: Teague Sterling <teague.sterling(a)bmrn.com> Date: Wed, Apr 4, 2018, 17:07 Subject: Please share around! To: John Irwin <jir322(a)gmail.com> We have 4 open bioinformatics/genetics positions. Please share around UCSF, QB3, and others as you can! *Scientist / Sr. Scientist, Computational Biologist – BioInfomatics* https://www.linkedin.com/jobs/view/613504083/ *Director / Associate Director, Computational Biologist – BioInfomatics* https://www.linkedin.com/jobs/view/613504209/ *Senior Scientist / Scientist, of Statistical Genetics* https://www.linkedin.com/jobs/view/613504208/ *Director / Associate Director, of Statistical Genetics* https://www.linkedin.com/jobs/view/597999803/ Teague Sterling — Principal Engineer Research Informatics, *BioMarin Pharmaceutical Inc.* 415.506.3687 <4155063687> | teague.sterling(a)bmrn.com This message is intended only for the confidential use of the intended recipient(s). If you have received this communication in error, please notify the sender by reply e-mail, and delete the original message and any attachments. Any unauthorized disclosure, copying, or distribution of this message (including the attachments), or the taking of any action based on it, is strictly prohibited.

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[Compbio-allhands] Fwd: New job opening in our group (Pfizer, Cambridge, MA)
by Jacobson, Matt 05 Apr '18

05 Apr '18

— Matt Begin forwarded message: From: "Mathiowetz, Alan M" <alan.m.mathiowetz(a)pfizer.com<mailto:alan.m.mathiowetz@pfizer.com>> Subject: New job opening in our group (Pfizer, Cambridge, MA) Date: April 4, 2018 at 2:40:53 PM PDT To: "Jacobson, Matt" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hello, Matt- I hope you are doing well. I wanted to let you know that we have a new job opening for a computational chemist -- in particular an expert in virtual screening -- in our group in Cambridge, MA. If you know of any top candidates who would be interested in applying for such a position, please pass along the link below. This contains a more thorough description and has a link where they can apply. We are looking to begin interviews in a couple of weeks, so it would be best for interested candidates to apply soon. Thanks and best regards. Alan Link: https://pfizer.wd1.myworkdayjobs.com/en-US/PfizerCareers/job/United-States-…

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[Compbio-allhands] 4/5/18 Seminar with Jeremy Gunawardena
by Flowers, Nicole 29 Mar '18

29 Mar '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 [cid:image001.png@01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Jeremy Gunawardena Harvard Beyond the Bacterial Paradigm in Gene Regulation April 5, 2018 G. Lewis, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Hiring at Merck SSF
by Jacobson, Matt 23 Mar '18

23 Mar '18

Merck is hiring -- Matt Sent from my iPhone Begin forwarded message: From: "Cheng, Alan C" <alan.cheng(a)merck.com<mailto:alan.cheng@merck.com>> Date: March 23, 2018 at 9:49:29 AM CST To: "Jacobson, Matt" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Subject: RE: Hiring at Merck SSF Hi Matt, I should mention that we have additional positions that might be interesting to students/postdocs. Here’s a listing of all the positions in the modeling and informatics group at Merck: South San Francisco Molecular Modeling: https://jobs.merck.com/job/South-San-Francisco-Sr-Scientist-Chemistry%2C-Mo… Palo Alto Postdoc in Antibody Engineering: https://jobs.merck.com/job/Palo-Alto-Postdoctoral-Research-Fellow-Antibody-… Kenilworth reaction mining Postdoc: https://jobs.merck.com/job/Rahway-Postdoctoral-Research-Fellow-Predictive-M… Boston Peptide modeling: Forthcoming, feel free to email me or Anne-Mai Wasserman, the hiring manager: anne.wassermann(a)merck.com<mailto:anne.wassermann@merck.com> Thanks, Alan Alan Cheng, Ph.D. Director Merck Research Labs 650 Gateway Blvd South San Francisco, CA 94080 Office:650-496-4834 alan.cheng(a)merck.com<mailto:alan.cheng@merck.com> From: Cheng, Alan C Sent: Friday, March 23, 2018 8:03 AM To: 'Jacobson, Matt' Subject: Hiring at Merck SSF Hi Matt, Hope you’re doing well. We’re hiring for a molecular modeling scientist at Merck in SSF! We would appreciate recommendations, as well as help getting the word out in your lab and at UCSF. Students/postdocs can also feel free to reach out with questions. https://merck.taleo.net/careersection/merck_external_career_section/jobdeta… Thank you, Alan Alan Cheng, Ph.D. Director Merck Research Labs 650 Gateway Blvd South San Francisco, CA 94080 Office:650-496-4834 alan.cheng(a)merck.com<mailto:alan.cheng@merck.com> Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system.

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[Compbio-allhands] Fwd: 2-year postdoctoral position on NMR of homo-repeats in Montpellier
by Andrej Sali 19 Mar '18

19 Mar '18

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: pau bernado <pau.bernado(a)cbs.cnrs.fr> > Subject: Fwd: 2-year postdoctoral position on NMR of homo-repeats in Montpellier > Date: March 19, 2018 at 3:41:33 AM PDT > To: pau bernado <pau.bernado(a)cbs.cnrs.fr> > > > > Dear Colleague, > > I would like to draw your attention to a two-year postdoctoral position funded by the European Research Council (ERC) in my group at the Centre de Biochimie Structurale in Montpellier . > > The project focuses on establishing the structural bases of Huntington's disease (HD), a deadly neurodegenerative pathology caused by extension of the poly-Glutamine homo-repeat in the huntingtin protein. To this aim, the candidate will apply NMR to residue-specific isotopically labelled samples produced using chemical biology tools recently developed in the group. Successful candidate should have a strong background in protein NMR and protein production and purification. Find in the attached file a more detailed description of the position. Please, spread this advertisement to students or postdocs that could be interested. > > Thanks a lot for your collaboration and best regards > > Pau Bernadó > >

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[Compbio-allhands] Fwd: 2018 Center for the Physics of Living Cells Summer School
by Andrej Sali 07 Mar '18

07 Mar '18

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "Chemla, Yann Robert" <ychemla(a)illinois.edu> > Subject: 2018 Center for the Physics of Living Cells Summer School > Date: March 7, 2018 at 8:21:10 AM PST > To: "Chemla, Yann Robert" <ychemla(a)illinois.edu>, "Luthey-Schulten, Zaida Ann" <zan(a)illinois.edu> > Reply-To: "director(a)cplc.illinois.edu" <director(a)cplc.illinois.edu> > > Dear Colleagues, > > On behalf of the Center for the Physics of Living Cells (CPLC), an NSF Physics Frontier Center at the University of Illinois, Urbana-Champaign, we are writing to announce the 2018 Physics of Living Cells Summer School being offered from July 22-28, 2018 at the University of Illinois at Urbana-Champaign. This one-week program is designed for graduate students, postdoctoral fellows and researchers in physics, biophysics, chemistry, life sciences, and engineering, and offers multiscale training in the latest experimental, theoretical and computational biophysical tools for quantifying and modeling cellular processes. > > Could you please post and circulate the attached announcement to those who might be interested? For more information and to apply by April 1, please visit: https://cplc.illinois.edu/outreach/summerschool2018/ <https://cplc.illinois.edu/outreach/summerschool2018/>. > > Thank you, > > Yann Chemla and Zaida Luthey-Schulten > Co-directors, Center for the Physics of Living Cells > <>director(a)cplc.illinois.edu <mailto:director@cplc.illinois.edu> > http://cplc.illinois.edu <http://cplc.illinois.edu/> > University of Illinois at Urbana-Champaign > 1110 West Green Street, MC 704 > Urbana, IL 61801-3080, USA

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[Compbio-allhands] Fwd: Tenure Track Position, Structure and Function of Membrane Transporters and Ion Channels, University of Bern, Switzerland
by Andrej Sali 06 Mar '18

06 Mar '18

> Begin forwarded message: > > From: "Hediger, Matthias (IBMM)" <matthias.hediger(a)ibmm.unibe.ch> > Subject: Tenure Track Position, Structure and Function of Membrane Transporters and Ion Channels, University of Bern, Switzerland > Date: March 6, 2018 at 6:44:01 AM PST > To: "bioparadigmsplus(a)lists.unibe.ch" <bioparadigmsplus(a)lists.unibe.ch> > Reply-To: matthias.hediger(a)ibmm.unibe.ch > > To: BioParadigms mailing list > Subject: Tenure Track Position, Structure and Function of Membrane Transporters and Ion Channels, University of Bern, Switzerland > > Note: For all inquiries, please contact Prof. Britta Engelhardt, president of the selection committee (E-mail: bengel(a)tki.unibe.ch <mailto:bengel@tki.unibe.ch>). > > Dear Colleagues, > > Please find in the attachment the announcement for an open tenure-track position at our Institute of Biochemistry and Molecular Medicine <https://www.nature.com/naturejobs/science/jobs/637681-assistant-professor-f…>. We are seeking a qualified scientist interested in the structure and function of membrane transporters and ion channels. > > Note that the application deadline is March 16th, 2018. > > Feel free to forward this information to anyone who matches the requested profile. Qualified women are strongly encouraged to apply. > > Sincerely, > > Matthias A. Hediger, PhD, Professor, Institute of Biochemistry and Molecular Medicine (IBMM) > > Sent on behalf of: > Professor Hugues Abriel, MD PhD > Managing Director, IBMM > and the IBMM Directorate > > Address: > Institute of Biochemistry and Molecular Medicine, > University of Bern > Bühlstrasse 28 > Phone: +41 31 631 41 11 > www.ibmm.unibe.ch <http://www.ibmm.unibe.ch/> > www.nccr-transcure.ch <http://www.nccr-transcure.ch/> > www.bioparadigms.org <http://www.bioparadigms.org/>_______________________________________________ > Bioparadigmsplus mailing list > Bioparadigmsplus(a)lists.unibe.ch <mailto:Bioparadigmsplus@lists.unibe.ch> > https://listserv.unibe.ch/mailman/listinfo/bioparadigmsplus <https://listserv.unibe.ch/mailman/listinfo/bioparadigmsplus>

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[Compbio-allhands] 3/8/18 Seminar with Thomas Kodak
by Flowers, Nicole 02 Mar '18

02 Mar '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Thomas Kodadek Scripps Chemical tools to monitor and manipulate the proteome March 8, 2018 P. Rohweder, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 3/1/18 Seminar with Christina Homer
by Flowers, Nicole 01 Mar '18

01 Mar '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Christina Homer Clements Lecture Adapting to crowded conditions: Quorum sensing in a fungal pathogen February 22, 2018 R. Tian, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Seeking Nominations for Scripps Fellows
by Andrej Sali 01 Mar '18

01 Mar '18

Sent from my iPhone Begin forwarded message: > From: Patrick Griffin <pgriffin(a)scripps.edu> > Date: March 1, 2018 at 10:25:08 AM PST > To: Andrej Sali <sali(a)salilab.org> > Subject: Seeking Nominations for Scripps Fellows > > Hi Andrej, > > Hope all is well. > > We have a new initiative at TSRI similar to programs elsewhere looking for outstanding new PHDs. Attached is the Flyer they gave us and below are the details. FYI - I would be willing to have one fellow in my lab. > > > The Scripps Research Institute (TSRI) invites applications for several newly created Scripps Fellow positions on the California and Florida campuses. > > Scripps Fellows applicants are intended to be scientists of exceptional promise and creativity nearing completion of their PhD work, or with very limited postdoctoral training. Scripps Fellows will be housed in the laboratory of a designated faculty sponsor who will provide space and share instrumentation. The Fellows will be provided with 100% salary support and funds for two co-workers for a period of three years. The Fellows will work on their own independent research projects, but will also have the opportunity to work closely with joint students and postdocs supported by the faculty sponsor. The Scripps Fellows will have Principal Investigator status, and have privileges to apply for external grants to expand their research program. Successful Scripps Fellows will be expected to emerge as nationally competitive for faculty positions, and can be considered for faculty positions at Scripps. > > I write to ask for your help to bring this opportunity to the attention of outstanding candidates to join this growing and dynamic academic discovery venture. We believe Scripps Fellow provides an outstanding opportunity, an unparalleled career development path combining the advantages of both mentored and independent research, for the most gifted and innovative minds to launch their independent academic career. Scientists from all disciplines in biological and chemical sciences are encouraged to apply. Please circulate this letter to your colleagues and lab members and, if interested, ask them to apply online at: http://apply.interfolio.com/45293. If you have any questions about this opportunity please don’t hesitate to reach out to me. A flyer is also enclosed, and I would appreciate it if you could post it. > > Sincerely, > > Pat > > Patrick R. Griffin, PhD > Professor, Co-Chair Molecular Medicine > The Scripps Research Institute > 130 Scripps Way #2A2 > Jupiter, FL 33458 > > Faculty page: http://www.scripps.edu/research/faculty/pgriffin > > Phone (561) 228-2200 > Fax (561) 228-3081 > e-mail: pgriffin(a)scripps.edu > Admin. Asst. Lynn Talaia (561) 228-2241, ltalaia(a)scripps.edu > > >

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[Compbio-allhands] Fwd: Research Scholar Program in Computational Biology at EPFL - ELIFR
by Andrej Sali 22 Feb '18

22 Feb '18

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Dal Peraro Matteo <matteo.dalperaro(a)epfl.ch> > Subject: Research Scholar Program in Computational Biology at EPFL - ELIFR > Date: February 22, 2018 at 6:33:51 AM PST > To: Dal Peraro Matteo <matteo.dalperaro(a)epfl.ch> > Reply-To: Dal Peraro Matteo <matteo.dalperaro(a)epfl.ch> > > Dear colleagues and friends, > > I would like to bring to your attention a new Research Scholar Program that we have recently established at the School of Life Sciences at the EPFL. > > In a nutshell, the idea is to attract outstanding fresh PhD graduates to join our Faculty straight after their doctoral work to head a small team of scientists, much in the spirit of analogous programs that have been put in place previously at MIT, Harvard, CSHL or UCSF, to name but a few. This is a non-tenured position that can be held up to five years. > > More information about the program, including the application procedure, can be found at https://elifr.epfl.ch/. As you will see there, the deadline for application is April 1st, 2018. > > If you have recently supervised promising PhD students who fit the profile, please encourage them to apply. Of course, feel free to advertise this opportunity broadly. > > Sincerely, > > Matteo > > >>

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[Compbio-allhands] 2/22/18 Seminar with Steve Quake
by Flowers, Nicole 16 Feb '18

16 Feb '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP [cid:image001.png@01D3A709.2DC732D0] Co-Sponsored by The Gladstone Center for Cell Circuitry Steve Quake Stanford Physioogy and Aging Probed with Singel Cell Genomics February 22, 2018 R. Tian, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] CVRI Seminar Announcement (Dr. Daniel Zuckerman)
by Grabe, Michael 15 Feb '18

15 Feb '18

Hi everyone, I wanted to invite you to a talk by my collaborator and friend Dan Zuckerman next week in the CVRI. Dan is one of the most thoughtful and curious computational biologist that I know, and I always learn something from listening to him. While he generally uses simplified models to explore statistical ideas in chemical biology, he still retains a deep appreciation for the true complexity of real biology. You are invited to attend a seminar in the CVRI: “Why nature let Rube Goldberg engineer the cell’s chemical dynamo … and further biophysical perspectives on molecular machines" Daniel Zuckerman, PhD Professor Department of Biomedical Engineering Oregon Health Sciences University Date: 11-12 pm, Thursday February 22nd, 2018 Place: CVRI Building First Floor (SC-159) Host: Michael Grabe

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[Compbio-allhands] 2/15/18 Seminar with Gurol Süel
by Flowers, Nicole 08 Feb '18

08 Feb '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP [cid:image001.png@01D3A0E6.B7E1D7F0] Co-Sponsored by The Gladstone Center for Cell Circuitry Gurol Süel UCSD Metabolic oscillations and electrical signaling in biofilms February 15, 2018 L. Weinberger, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] CANCELLED-2/8/18 Seminar with Carolyn Bertozzi
by Flowers, Nicole 08 Feb '18

08 Feb '18

PLEASE NOTE THAT TODAY’S SEMINAR HAS BEEN CANCELLED. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546 From: "Flowers, Nicole" <Nicole.Flowers(a)ucsf.edu> Date: Friday, February 2, 2018 at 9:25 AM To: CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU>, "bpstudents(a)listserv.ucsf.edu" <bpstudents(a)listserv.ucsf.edu>, "bbcfaculty(a)listserv.ucsf.edu" <bbcfaculty(a)listserv.ucsf.edu> Subject: 2/8/18 Seminar with Carolyn Bertozzi BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Carolyn Bertozzi Stanford Cancer immune therapies targeting glycol-immune checkpoints February 8, 2018 P. Rohweder, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Postdoc Position at BSC and AstraZeneca
by Jacobson, Matt 06 Feb '18

06 Feb '18

Begin forwarded message: From: Victor Guallar <guallarv(a)gmail.com<mailto:guallarv@gmail.com>> Subject: Postdoc Position at BSC and AstraZeneca Date: February 6, 2018 at 1:06:35 AM PST Dear colleges, Could you please diffuse this BSC and AstraZeneca postdoctoral shared position, to develop a FEP-MC code, among your group. https://www.bsc.es/join-us/excellence-career-opportunities/stars Thank you and all the best Victor -- Victor Guallar ICREA Research Professor, BSC, Barcelona (Spain) +34(93)4137727 Adjunct Professor, Washington University, St Louis, MO (USA) +1(314) 3628782

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[Compbio-allhands] 2/8/18 Seminar with Carolyn Bertozzi
by Flowers, Nicole 02 Feb '18

02 Feb '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Carolyn Bertozzi Stanford Cancer immune therapies targeting glycol-immune checkpoints February 8, 2018 P. Rohweder, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Cheminformatics Position at Roche Basel
by Michael Keiser 27 Jan '18

27 Jan '18

---------- Forwarded message ---------- From: Hert, Jerome <jerome.hert(a)roche.com> Date: Thu, Jan 18, 2018 at 10:36 AM Subject: Cheminformatics Position at Roche Basel To: Jérôme Hert <jerome.hert(a)roche.com> Dear colleagues, I would like to inform you of a new job opportunity in our Computer-Aided Drug Design (CADD) team at Roche Basel. Our team is involved in drug discovery projects with the aim of guiding the design of new pharmaceutically active molecules. We are looking for an enthusiastic and talented collaborator to complement our cheminformatics capabilities. If you know of any suitable candidate, feel free to forward this message or let me know. Thank you. Link to the job offer: https://www.roche.com/careers/jobs/jobsearch/job. htm?id=E-3508868442 Kind regards, Jérôme Hert. -- Jérôme Hert, PhD Section Head, Computer-Aided Drug Design Therapeutic Modalities, Chemical Biology Roche Pharmaceutical Research and Early Development Roche Innovation Center Basel F. Hoffmann-La Roche Ltd T: +41 6168 79639 E: jerome.hert(a)roche.com -- Michael J Keiser, PhD Assistant Professor, UCSF Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Institute for Computational Health Sciences Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] 2/1/18 Seminar with Karl Broman
by Flowers, Nicole 26 Jan '18

26 Jan '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Karl Broman University of Wisconsin- Madison 17 years of R/qtl: developing, maintaining, and supporting scientific software February 1, 2018 J. Witte, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Faculty opening in systems biology, bioinformatics, computational biology, and chemical biology
by Jacobson, Matt 25 Jan '18

25 Jan '18

Begin forwarded message: From: "Prof. YANG M" <bhmyang(a)cityu.edu.hk<mailto:bhmyang@cityu.edu.hk>> Subject: Faculty opening in systems biology, bioinformatics, computational biology, and chemical biology Date: January 24, 2018 at 6:52:29 PM PST To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Dear Prof. Jacobson, City University of Hong Kong has several faculty openings in systems biology, bioinformatics, computational biology, and chemical biology. Because of your great work in these areas, I hope to seek your help in forwarding the attached recruiting event on Feb 9 in Fairmont San Francisco to members of your group who may be interested in our faculty positions. I will also visit UCSF on Feb 12, so if any of your group members are interested, I will be pleased to arrange a meeting and introduce our biomedical science programs. http://www.cityu.edu.hk/bms/ Thank you very much for your help! Sincerely yours Mengsu (Michael) Yang, PhD Head and Chair Professor Department of Biomedical Sciences City University of Hong Kong Tel: 852-3442-7797 Disclaimer: This email (including any attachments) is for the use of the intended recipient only and may contain confidential information and/or copyright material. If you are not the intended recipient, please notify the sender immediately and delete this email and all copies from your system. Any unauthorized use, disclosure, reproduction, copying, distribution, or other form of unauthorized dissemination of the contents is expressly prohibited.

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[Compbio-allhands] Fwd: Faculty opening in systems biology, bioinformatics, computational biology, and chemical biology
by Grabe, Michael 25 Jan '18

25 Jan '18

Please see the faculty openings below for those that haven’t seen this. best, michael ---------------------------------------------------------- Michael Grabe Associate Professor University of California, San Francisco Cardiovascular Research Institute Department of Pharmaceutical Chemistry 555 Mission Bay Blvd South, Room 452T, MC 3122 San Francisco, California 94143 415-502-2874 (office) 415-476-8173 (fax) Begin forwarded message: From: "Prof. YANG M" <bhmyang(a)cityu.edu.hk<mailto:bhmyang@cityu.edu.hk>> Subject: FW: Faculty opening in systems biology, bioinformatics, computational biology, and chemical biology Date: January 24, 2018 at 6:50:33 PM PST To: "Grabe, Michael" <Michael.Grabe(a)ucsf.edu<mailto:Michael.Grabe@ucsf.edu>> Dear Prof. Grabe, City University of Hong Kong has several faculty openings in systems biology, bioinformatics, computational biology, and chemical biology. Because of your great work in computational biology, I hope to seek your help in forwarding the attached recruiting event on Feb 9 in Fairmont San Francisco to members of your group who may be interested in our faculty positions. I will also visit UCSF on Feb 12, so if any of your group members are interested, I will be pleased to arrange a meeting and introduce our biomedical science programs. http://www.cityu.edu.hk/bms/ Thank you very much for your help! Sincerely yours Mengsu (Michael) Yang, PhD Head and Chair Professor Department of Biomedical Sciences City University of Hong Kong Tel: 852-3442-7797 Disclaimer: This email (including any attachments) is for the use of the intended recipient only and may contain confidential information and/or copyright material. If you are not the intended recipient, please notify the sender immediately and delete this email and all copies from your system. Any unauthorized use, disclosure, reproduction, copying, distribution, or other form of unauthorized dissemination of the contents is expressly prohibited.

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[Compbio-allhands] Submit poster for Computers in Chemistry Event, sponsored by PH-OCS & ACS COMP Together
by magdalena K 23 Jan '18

23 Jan '18

The COMP Together champions in collaboration with PH-OCS talks would like to announce the following event: Speaker: Dan Ortwine Title: Poster session and seminar "Water, water, everywhere...": Modeling water molecules in protein-ligand complexes Date: 2018-01-23 Time: 6:00 PM Sponsor: Gilead and UCSF Location UCSF 1700 4th St. UCSF Mission Bay GH-N114 San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area COMP Together and PH-OCS talks (UCSF Pharm Postdocs) We encourage attendees to propose a poster for presentation. Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together": johanna.jansen(a)novartis.com <mailto:johanna.jansen@novartis.com>, wei.binqing(a)gene.com <mailto:wei.binqing@gene.com>, siegfried.leung(a)circlepharma.com <mailto:siegfried.leung@circlepharma.com>, Uli.Schmitz(a)gilead.com <mailto:Uli.Schmitz@gilead.com>, xtal.ca(a)gmail.com <mailto:xtal.ca@gmail.com> Schedule: 6-7 pm: Networking and Posters (pizza provided) 7-8 pm: Seminar & discussion "Water, water, everywhere...: Modeling water molecules in protein-ligand complexes, a seminar by Dan Ortwine 8-9 pm: Opportunity for extended discussion and networking Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=39 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=39>. If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com <mailto:atjohanna.jansen@novartis.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>

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[Compbio-allhands] Fwd: West Coast Theory Symposium: 28th March 2018
by Jacobson, Matt 17 Jan '18

17 Jan '18

Begin forwarded message: From: Tom Markland <tmarkland(a)stanford.edu<mailto:tmarkland@stanford.edu>> Subject: West Coast Theory Symposium: 28th March 2018 Date: January 17, 2018 at 1:15:36 AM PST To: "Jacobson, Matt" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Dear Matt, On behalf of Martin Head-Gordon, Eran Rabani, Joe Subotnik and myself, we are writing to ask for your help in advertising to your students, postdocs, and colleagues the West Coast Symposium on Theoretical Chemistry which will be held on 28th March 2018 at Stanford University. This 1-day symposium will consist 7 invited speaker talks and 5 contributed graduate student/postdoc talks along with a poster session. The aim of this meeting is to strengthen ties between theoretical chemistry groups on the West Coast and to give students and postdocs from the area a chance to present their research. This year the meeting will also celebrate Todd Martinez’s 50th birthday. Details of the meeting along with registration and the application procedure for giving a contributed talk can be found at the meeting website: http://theochem.stanford.edu/ Please forward this information to any students and colleagues who you feel might be interested in this event. We hope both you and your students can join us for this event. All the best, Tom -- Thomas E. Markland Assistant Professor of Chemistry Stanford University Email: tmarkland(a)stanford.edu Faculty: chemistry.stanford.edu/people/thomas-markland Group: markland.stanford.edu

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[Compbio-allhands] Fwd: West Coast Theory Symposium: 28th March 2018
by Tom Ferrin 17 Jan '18

17 Jan '18

FYI... -------- Forwarded Message -------- Subject: West Coast Theory Symposium: 28th March 2018 Date: Wed, 17 Jan 2018 01:16:30 -0800 From: Tom Markland <tmarkland(a)stanford.edu> To: tef(a)cgl.ucsf.edu Dear Prof. Ferrin, On behalf of Martin Head-Gordon, Eran Rabani, Joe Subotnik and myself, we are writing to ask for your help in advertising to your students, postdocs, and colleagues the West Coast Symposium on Theoretical Chemistry which will be held on 28th March 2018 at Stanford University. This 1-day symposium will consist 7 invited speaker talks and 5 contributed graduate student/postdoc talks along with a poster session. The aim of this meeting is to strengthen ties between theoretical chemistry groups on the West Coast and to give students and postdocs from the area a chance to present their research. This year the meeting will also celebrate Todd Martinez’s 50th birthday. Details of the meeting along with registration and the application procedure for giving a contributed talk can be found at the meeting website: http://theochem.stanford.edu/ Please forward this information to any students and colleagues who you feel might be interested in this event. We hope both you and your students can join us for this event. All the best, Tom -- Thomas E. Markland Assistant Professor of Chemistry Stanford University Email: tmarkland(a)stanford.edu Faculty: chemistry.stanford.edu/people/thomas-markland Group: markland.stanford.edu

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[Compbio-allhands] 1/18/18 Seminar with Andrew Myers
by Flowers, Nicole 12 Jan '18

12 Jan '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Andrew Myers Harvard Toward the discovery of next-generation antibiotics January 18, 2018 I. Seiple, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 1/11/18 Seminar with Milan Mrksich
by Flowers, Nicole 09 Jan '18

09 Jan '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/mJXpqP Milan Mrksich Northwestern University Combining Arrays and Mass Spectrometry for High Throughput Discovery in Chemistry and Biology January 11, 2018 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Postdoctoral fellow search - Center for the Physics of Living Cells (CPLC) at the University of Illinois - PLEASE POST AND CIRCULATE
by Andrej Sali 06 Jan '18

06 Jan '18

> Begin forwarded message: > > From: "Chemla, Yann Robert" <ychemla(a)illinois.edu> > Subject: Postdoctoral fellow search - Center for the Physics of Living Cells (CPLC) at the University of Illinois - PLEASE POST AND CIRCULATE > Date: January 5, 2018 at 2:56:16 PM PST > To: "RONMAIER(a)u.washington.edu" <RONMAIER(a)u.washington.edu>, "rosalie.lawrence1(a)gmail.com" <rosalie.lawrence1(a)gmail.com>, "rottapel(a)uhnres.utoronto.ca" <rottapel(a)uhnres.utoronto.ca>, "roux(a)uchicago.edu" <roux(a)uchicago.edu>, "rouzi002(a)umn.edu" <rouzi002(a)umn.edu>, "roy.bar-ziv(a)weizmann.ac.il" <roy.bar-ziv(a)weizmann.ac.il>, "roy_kishony(a)hms.harvard.edu" <roy_kishony(a)hms.harvard.edu>, "rross(a)ucsd.edu" <rross(a)ucsd.edu>, "rsxf7(a)mail.missouri.edu" <rsxf7(a)mail.missouri.edu>, "Tippana, Ramreddy" <rtippana(a)illinois.edu>, "rtmoon(a)u.washington.edu" <rtmoon(a)u.washington.edu>, "rtompkins(a)partners.org" <rtompkins(a)partners.org>, "RTSIEN(a)ucsd.edu" <RTSIEN(a)ucsd.edu>, "Rube, Hans Tomas" <rube(a)illinois.edu>, "ruderman(a)hms.harvard.edu" <ruderman(a)hms.harvard.edu>, "rudner(a)hms.harvard.edu" <rudner(a)hms.harvard.edu>, "rudolfo(a)mbl.edu" <rudolfo(a)mbl.edu>, "rudrak(a)umich.edu" <rudrak(a)umich.edu>, "rudy(a)wustl.edu" <rudy(a)wustl.edu>, "rueda(a)chem.wayne.edu" <rueda(a)chem.wayne.edu>, "RUSS.ALTMAN(a)stanford.edu" <RUSS.ALTMAN(a)stanford.edu>, "ruthnu(a)helix.nih.gov" <ruthnu(a)helix.nih.gov>, "rw144(a)le.ac.uk" <rw144(a)le.ac.uk>, "rweiss(a)mit.edu" <rweiss(a)mit.edu>, "rydenfelt(a)caltech.edu" <rydenfelt(a)caltech.edu>, "s.a.stratmann(a)rug.nl" <s.a.stratmann(a)rug.nl>, "s.halford(a)bristol.ac.uk" <s.halford(a)bristol.ac.uk>, "s.miles(a)bristol.ac.uk" <s.miles(a)bristol.ac.uk>, "s.uphoff1(a)physics.ox.ac.uk" <s.uphoff1(a)physics.ox.ac.uk>, "s.watanabe(a)mfour.med.kyoto-u.ac.jp" <s.watanabe(a)mfour.med.kyoto-u.ac.jp>, "sabeysi1(a)jhu.edu" <sabeysi1(a)jhu.edu>, "saffarian(a)physics.utah.edu" <saffarian(a)physics.utah.edu>, "safinya(a)mrl.ucsb.edu" <safinya(a)mrl.ucsb.edu>, "saikrishnan(a)iiserpune.ac.in" <saikrishnan(a)iiserpune.ac.in>, "saleh(a)engineering.ucsb.edu" <saleh(a)engineering.ucsb.edu>, "sali(a)salilab.org" <sali(a)salilab.org>, "Sam.Safran(a)weizmann.ac.il" <Sam.Safran(a)weizmann.ac.il>, "sam.t.hess(a)umit.maine.edu" <sam.t.hess(a)umit.maine.edu>, "sam.yoshua(a)mail.utoronto.ca" <sam.yoshua(a)mail.utoronto.ca>, "samir.hamdan(a)kaust.edu.sa" <samir.hamdan(a)kaust.edu.sa>, "samuel(a)physics.harvard.edu" <samuel(a)physics.harvard.edu>, "sandler(a)microbio.umass.edu" <sandler(a)microbio.umass.edu>, "Sandra.Masur(a)mssm.edu" <Sandra.Masur(a)mssm.edu>, "sangerjo(a)upstate.edu" <sangerjo(a)upstate.edu>, "savage.161(a)osu.edu" <savage.161(a)osu.edu>, "saxenapo(a)indiana.edu" <saxenapo(a)indiana.edu>, "sb10031(a)cam.ac.uk" <sb10031(a)cam.ac.uk>, "sblock(a)stanford.edu" <sblock(a)stanford.edu>, "schimert(a)umich.edu" <schimert(a)umich.edu>, "schlick(a)nyu.edu" <schlick(a)nyu.edu>, "schlierf(a)bcube-dresden.de" <schlierf(a)bcube-dresden.de>, "Schlossman, Mark L (UIC)" <schloss(a)uic365.mail.onmicrosoft.com>, "schuler(a)bioc.uzh.ch" <schuler(a)bioc.uzh.ch>, "sckowalczykowski(a)ucdavis.edu" <sckowalczykowski(a)ucdavis.edu>, "Scott.Waldman(a)jefferson.edu" <Scott.Waldman(a)jefferson.edu>, "scraig(a)jhmi.edu" <scraig(a)jhmi.edu>, "sdhakal(a)umich.edu" <sdhakal(a)umich.edu>, "Sean.Decatur(a)oberlin.edu" <Sean.Decatur(a)oberlin.edu>, "sean.johnson(a)usu.edu" <sean.johnson(a)usu.edu>, "seg(a)u.washington.edu" <seg(a)u.washington.edu>, "segall(a)aecom.yu.edu" <segall(a)aecom.yu.edu>, "Selvin, Paul R" <selvin(a)illinois.edu>, "sergei(a)physics.purdue.edu" <sergei(a)physics.purdue.edu>, "sethna(a)lassp.cornell.edu" <sethna(a)lassp.cornell.edu>, "setienne(a)pasteur.fr" <setienne(a)pasteur.fr>, "sga(a)sickkids.ca" <sga(a)sickkids.ca>, "shaevitz(a)princeton.edu" <shaevitz(a)princeton.edu>, "shafraz(a)iastate.edu" <shafraz(a)iastate.edu>, "shalpain(a)ucsd.edu" <shalpain(a)ucsd.edu>, "shan.zou(a)nrc.ca" <shan.zou(a)nrc.ca>, "shannonyan(a)berkeley.edu" <shannonyan(a)berkeley.edu>, "shapiro(a)convex.hhmi.columbia.edu" <shapiro(a)convex.hhmi.columbia.edu>, "shawn(a)uoneuro.uoregon.edu" <shawn(a)uoneuro.uoregon.edu>, "shea(a)chem.ucsb.edu" <shea(a)chem.ucsb.edu>, "shell(a)gwdg.de" <shell(a)gwdg.de>, "shixinliu84(a)gmail.com" <shixinliu84(a)gmail.com>, "shnerbn(a)mail.biu.ac.il" <shnerbn(a)mail.biu.ac.il>, "shohng(a)snu.ac.kr" <shohng(a)snu.ac.kr>, "shs(a)chem.psu.edu" <shs(a)chem.psu.edu>, "shubeita(a)chaos.utexas.edu" <shubeita(a)chaos.utexas.edu>, "sigdelk(a)missouri.edu" <sigdelk(a)missouri.edu>, "siggiae(a)rockefeller.edu" <siggiae(a)rockefeller.edu>, "silpasoni1(a)gmail.com" <silpasoni1(a)gmail.com>, "simas(a)indiana.edu" <simas(a)indiana.edu>, "Simon.Lattmann(a)fmi.ch" <Simon.Lattmann(a)fmi.ch>, "simon.phillips(a)rc-harwell.ac.uk" <simon.phillips(a)rc-harwell.ac.uk>, "simon.rainville(a)phy.ulaval.ca" <simon.rainville(a)phy.ulaval.ca>, "simons(a)mpi-cbg.de" <simons(a)mpi-cbg.de>, "simpsonml1(a)ornl.gov" <simpsonml1(a)ornl.gov>, "singer(a)chemistry.ohio-state.edu" <singer(a)chemistry.ohio-state.edu>, "singlemolecule(a)gmail.com" <singlemolecule(a)gmail.com>, "sishaw(a)indiana.edu" <sishaw(a)indiana.edu>, "sivaguru(a)igb.uiuc.edu" <sivaguru(a)igb.uiuc.edu>, "sivasank(a)iastate.edu" <sivasank(a)iastate.edu>, "skewis(a)bu.edu" <skewis(a)bu.edu>, "skorda(a)wistar.org" <skorda(a)wistar.org>, "skron(a)uchicago.edu" <skron(a)uchicago.edu>, "skumar(a)berkeley.edu" <skumar(a)berkeley.edu>, "skunzel(a)nimr.mrc.ac.uk" <skunzel(a)nimr.mrc.ac.uk>, "skuo(a)bme.jhu.edu" <skuo(a)bme.jhu.edu>, "skushner(a)uga.edu" <skushner(a)uga.edu>, "slkeller(a)chem.washington.edu" <slkeller(a)chem.washington.edu>, "smatson(a)bio.unc.edu" <smatson(a)bio.unc.edu>, "smbernard(a)wisc.edu" <smbernard(a)wisc.edu>, "smithjc(a)ornl.gov" <smithjc(a)ornl.gov>, "smr(a)bcm.edu" <smr(a)bcm.edu>, "smusser(a)tamu.edu" <smusser(a)tamu.edu>, "snaru(a)mfour.med.kyoto-u.ac.jp" <snaru(a)mfour.med.kyoto-u.ac.jp>, "sokoloskij(a)biochem.wustl.edu" <sokoloskij(a)biochem.wustl.edu>, "soonkyo(a)gatech.edu" <soonkyo(a)gatech.edu> > > Dear Colleagues, > We are writing to inform you of several postdoctoral fellowship opportunities in experimental and theoretical biophysics in the "Center for the Physics of Living Cells <http://www.cplc.illinois.edu/>" (CPLC), a National Science Foundation Physics Frontier Center at the University of Illinois, Urbana-Champaign. Fellowships are available starting May 2018, and will normally last a minimum of two years. > > Research in the Center falls in four themes: > (1) Single-molecule biophysics at the molecular-cellular interface; > (2) Maximizing information content of single cell experiments; > (3) Collective dynamics: from cell-cell interaction to multicellular organisms; > (4) Increasing biological realism in theory and computation. > > Fellows will use state-of-the-art experimental and theoretical biophysical tools to accomplish these goals: optical tweezers, single-molecule and super-resolution fluorescence microscopy, fabrication of synthetic nanostructures, live cell imaging, chemical biology, experimental evolution and microbial ecology, statistical cancer genomics, high-throughput assay development, classical and quantum mechanical molecular simulations, stochastic modeling, whole cell simulations, as well as the standard methods of molecular and cellular biology and genetics. Research will involve both the development and improvement of experimental and computational techniques and the application of these techniques to particular biological processes such as replication, transcription, translation, cell transport, cellular mechanics signaling, motility, microbial communities and evolutionary dynamics. As projects are collaborative endeavors between several labs, the Fellows will have the opportunity to be jointly advised by two or more faculty members of the Center. > > Fellows will also be expected to participate in education and outreach activities of the Center. Candidates for this postdoctoral position must have a Ph.D. in the physical sciences, life science, or related disciplines, and must be highly qualified in one of the experimental or theoretical areas. Excellent oral- and written-communication skills are required for this position. The University of Illinois is an equal opportunity/affirmative action employer, and welcomes applications from minority and women candidates. > > Applications for this position (and other positions available in the Physics Department) may be submitted electronically via LINK HERE <https://my.physics.illinois.edu/submit/go.asp?id=1210>, and should arrive no later than February 1, 2018. Applications received after the deadline may not be considered. These applications should include, in PDF format: > (1) A cover letter > (2) A curriculum vitae > (3) A research statement not exceeding three pages, summarizing your past and ongoing research, > (4) A publications list, including papers and preprints with their URLs. For any papers or preprints that are not readily available via the internet, applicants may wish to upload electronic copies via the "supporting document" channel. > > Please post and circulate the attached announcement or if interested, apply accordingly. > > For more information about CPLC, please visit http://cplc.illinois.edu <http://cplc.illinois.edu/>. > > Thank you. > > Yann Chemla and Zaida Luthey-Schulten > Co-directors, Center for the Physics of Living Cells > <>director(a)cplc.illinois.edu <mailto:director@cplc.illinois.edu> > http://cplc.illinois.edu <http://cplc.illinois.edu/> > University of Illinois at Urbana-Champaign > 1110 West Green Street, MC 704 > Urbana, IL 61801-3080, USA

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[Compbio-allhands] Fwd: group leader positions at the CRG in Barcelona
by Andrej Sali 04 Dec '17

04 Dec '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Roderic Guigo <roderic.rguigo(a)gmail.com> > Subject: group leader positions at the CRG in Barcelona > Date: December 4, 2017 at 10:46:34 AM PST > To: akk(a)blingua.org, acs(a)soe.ucsc.edu, agusti(a)klingon.uab.es, a.krol(a)ibmc-cnrs.unistra.fr, sandelin(a)gsc.riken.go.jp, Alexandre.Reymond(a)unil.ch, valencia(a)cnio.es, brazma(a)ebi.ac.uk, aconesa(a)cipf.es, ana.pombo(a)mdc-berlin.de, krogh(a)binf.ku.dk, andras(a)fiserlab.org, sali(a)salilab.org, andy(a)nhgri.nih.gov, ad8q(a)virginia.edu, anna.tramontano(a)uniroma1.it, adanchin(a)pasteur.fr, anton(a)bx.psu.edu, antonio.barbadilla(a)uab.es, "Navarro, arcadi" <arcadi.navarro(a)upf.edu>, arend(a)stanford.edu, asmit(a)systemsbiology.org, agh(a)pcbi.upenn.edu, attila.nemeth(a)vkl.uni-regensburg.de, baldo.oliva(a)gmail.com, bstranger(a)medicine.bsd.uchicago.edu, woldb(a)caltech.edu, Ben Lehner <lehner.ben(a)gmail.com>, bmajoros(a)tigr.org, biren(a)ucsd.edu, boris.turk(a)ijs.si, stefania.bosi(a)gmail.com, frey(a)psi.toronto.edu, bmorgen(a)gwdg.de, rost(a)in.tum.de, casadio(a)biocomp.unibo.it, casey.bergman(a)manchester.ac.uk, Cedric Notredame <cedric.notredame(a)crg.eu>, cburge(a)mit.edu, chris.ponting(a)igmn.ed.ac.uk, sanderc(a)mskcc.org, cstorm(a)birc.dk, ouzounis(a)certh.gr, cmb(a)leloir.org.ar, damien.devos(a)gmail.com, gusfield(a)cs.ucdavis.edu, daniel.gautheret(a)u-psud.fr, daniel.jost(a)imag.fr, haussler(a)cse.ucsc.edu, dkulp(a)cs.umass.edu, sankoff(a)uottawa.ca, dabaker(a)u.washington.edu, dtj(a)cs.ucl.ac.uk, dreverter(a)yahoo.es, des.higgins(a)ucd.ie, deyou.zheng(a)einstein.yu.edu, emrubin(a)lbl.gov, edith.heard(a)curie.fr, furlong(a)embl.de, elenarivas(a)fas.harvard.edu, e.paci(a)leeds.ac.uk, emidio.capriotti(a)gmail.com, eranhalperin(a)gmail.com, egreen(a)nhgri.nih.gov, esko.ukkonen(a)cs.helsinki.fi, eswar.n(a)gmail.com, koonin(a)ncbi.nlm.nih.gov, birney(a)ebi.ac.uk, fxgr(a)ibmb.csic.es, falshahrour(a)cnio.es, fambmc(a)ibmb.csic.es, fdenoeud(a)genoscope.cns.fr, francescxavier.aviles(a)uab.es, francis.ouellette(a)gmail.com, fenguita(a)medicina.ulisboa.pt, pancho.melo(a)gmail.com, alber(a)usc.edu, f.grosveld(a)erasmusmc.nl, gbenson(a)bu.edu, stormo(a)ural.wustl.edu, myers(a)mpi-cbg.de, genevieve.almouzni(a)curie.fr, gc(a)harvard.edu, blobel(a)email.chop.edu, giacomo.cavalli(a)igh.cnrs.fr, bgicquel(a)pasteur.fr, graziano.pesole(a)uniba.it, gustavo(a)systemsbiology.org, hans.ellegren(a)ebc.uu.se, h.stunnenberg(a)ncmls.ru.nl, hsafer(a)alum.mit.edu, howchang(a)stanford.edu, hrc(a)ens.fr, ifkorf(a)ucdavis.edu, muchnik(a)dimacs.rutgers.edu, imartins(a)clinic.ub.es, ildubchak(a)lbl.gov, isidre.gibert(a)uab.es, mingarro(a)uv.es, i.junier(a)gmail.com, grosse(a)ipk-gatersleben.de, ivo(a)tbi.univie.ac.at, j.heringa(a)vu.nl, korbel(a)embl.de, thornton(a)ebi.ac.uk, jaume.bertranpetit(a)upf.edu, mieg(a)ncbi.nlm.nih.gov, jsbach(a)genoscope.cns.fr, jean-michel.claverie(a)igs.cnrs-mrs.fr, jla1(a)sanger.ac.uk, stoye(a)techfak.uni-bielefeld.de, jbravo(a)ibv.csic.es, kent(a)cse.ucsc.edu, mullikin(a)mail.nih.gov, jim.hughes(a)imm.ox.ac.uk, jseoane(a)vhio.net, joaquin.dopazo(a)gmail.com, jobdekker1(a)gmail.com, joe(a)derisilab.ucsf.edu, joel.rozowsky(a)yale.edu, jstam1(a)gmail.com, j.mattick(a)imb.uq.edu.au, joverington(a)mac.com, johnrinn(a)fas.harvard.edu, jmestres(a)imim.es, jquintana(a)pcb.ub.es, jlgomska(a)upo.es, collado(a)cifn.unam.mx, karsten.rippe(a)bioquant.uni-heidelberg.de, kerstin(a)biotoul.fr, kardlie(a)broadinstitute.org, elnitski(a)bx.psu.edu, lars.juhl.jensen(a)cpr.ku.dk, leonardo.pardo(a)uab.es, leonid(a)mit.edu, lpachter(a)math.berkeley.edu, Lluis Ribas <lluis.ribas(a)irbbarcelona.org>, milanesi(a)itb.cnr.it, Luis Serrano Pubull <luis.serrano(a)crg.eu>, emmanouil.dermitzakis(a)unige.ch, citterich(a)uniroma2.it, marcnol(a)gmail.com, marie-france.sagot(a)inria.fr, nicodem(a)na.infn.it, mark.borodovsky(a)biology.gatech.edu, mark.gerstein(a)yale.edu, marc_vidal(a)dfci.harvard.edu, myandell(a)fruitfly.org, huynen(a)cmbi.ru.nl, martin(a)omicia.com, tompa(a)cs.washington.edu, martin.vingron(a)molgen.mpg.de, blanchem(a)mcb.mcgill.ca, matt(a)cgl.ucsf.edu, mayatopf(a)gmail.com, mschatz(a)cshl.edu, ma11(a)gen.cam.ac.uk, brent(a)cse.wustl.edu, mpsnyder(a)stanford.edu, mzhang(a)cshl.edu, mczody(a)genome.wi.mit.edu, gelfand(a)iitp.ru, modesto(a)mmb.pcb.ub.es, Montserrat Corominas <mcorominas(a)ub.edu>, madhusudhan(a)iiserpune.ac.in, luscombe(a)ebi.ac.uk, lenov(a)ebi.ac.uk, gascuel(a)lirmm.fr, olivier.neyrolles(a)gmail.com, pankaj65(a)yahoo.com, babbitt(a)cgl.ucsf.edu, bertone(a)stemcells.cam.ac.uk, flicek(a)ebi.ac.uk, ppevzner(a)cs.ucsd.edu, bork(a)embl-heidelberg.de, peter.fraser(a)babraham.ac.uk, bourne(a)sdsc.edu, Philipp.Bucher(a)isb-sib.ch, pfbaldi(a)ics.uci.edu, pierre.rouze(a)psb.ugent.be, ricardo.baeza(a)upf.edu, rd(a)sanger.ac.uk, rmott(a)well.ox.ac.uk, myers(a)shgc.stanford.edu, casadio(a)alma.unibo.it, Roderic Guigo <roderic.guigo(a)crg.cat>, rolf.apweiler(a)ebi.ac.uk, romina.garrido(a)crg.cat, rshamir(a)tau.ac.il, anrosa76(a)gmail.com, rch8(a)psu.edu, salvador.aznar-benitah(a)irbbarcelona.org, sandrine(a)stat.berkeley.edu, sfelena(a)ibmcp.upv.es, seaneddy(a)fas.harvard.edu, ssunyaev(a)rics.bwh.harvard.edu, silvio(a)cribi.unipd.it, kasif(a)bu.edu, brunak(a)cbs.dtu.dk, sridharh(a)pcbi.upenn.edu, stephen.taylor(a)imm.ox.ac.uk, salzberg(a)umiacs.umd.edu, brenner(a)compbio.berkeley.edu, stylianos.antonarakis(a)medecine.unige.ch, suzi(a)fruitfly.org, tsmith(a)darwin.bu.edu, terry(a)stat.berkeley.edu, "Gingeras, Thomas" <gingeras(a)cshl.edu>, tschiex(a)toulouse.inra.fr, twiehe(a)zedat.fu-berlin.de, tom(a)cryst.bioc.cam.ac.uk, tim.hubbard(a)kcl.ac.uk, reddy(a)duke.edu, t.a.knoch(a)erasmusmc.nl, tullius(a)bu.edu, tef(a)cgl.ucsf.edu, mistelit(a)mail.nih.gov, tomas.marques(a)upf.edu, torsten.schwede(a)unibas.ch, tlappalainen(a)nygenome.org, tyler.alioto(a)cnag.crg.eu, ubastolla(a)cbm.uam.es, uwe.ohler(a)duke.edu, vgladyshev(a)rics.bwh.harvard.edu, vgcorces(a)gmail.com, vbafna(a)cs.ucsd.edu, vlad.bajic(a)gmail.com, webb(a)bio.cse.psu.edu, wendy.bickmore(a)igmm.ed.ac.uk, wli(a)sturt.rockefeller.edu, w.mewes(a)gsf.de, william-noble(a)u.washington.edu, w.delaat(a)hubrecht.eu, wyeth(a)cmmt.ubc.ca, xavier.daura(a)uab.cat, xdmcri(a)ibmb.csic.es, xdeupi(a)gmail.com, yves.vandepeer(a)psb.vib-ugent.be, zhiping(a)bu.edu > > Dear colleagues, > > I would like to bring to your attention a number of group leader positions available at the Center for Genomic Reguation, National Center for Genomics Analysis (CRG-CNAG) in Barcelona. > > https://www.nature.com/naturejobs/science/jobs/628763-two-junior-and-two-se… <https://www.nature.com/naturejobs/science/jobs/628763-two-junior-and-two-se…> > > (see also attachement) > > The junior group leader positions are ideal for young researchers starting their career as independent researchers. Senior positions are for more stablished researchers, with already demonstated leading experience. We are specifically aiming to recruit a leader in Medical Genomics, which could eventually develop a larger research prorgram in this discipline. > > The CRG is located at the Barcelona Biomedical Research Park (PRBB) with six other institutes including a newly created EMBL Outstaion. Barcelona ranks among the top european cities to science. It is also a great place to live. The capital of Catalonia, it is a cosmopolitan city rich in history, culture, art, sports, food, .... It has lively streets. Catalonia has great outdoors, and within one day trips you can find yourself in a secluded beach or hicking a solitary peak. Skiing is within two hours drive. > > Please consider these positions and help us to distribute this message > > Best regards > > Roderic Guigo, > Bioinformatics and Genomics > Center for Genomic Regulation and University Pompeu Fabra >

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[Compbio-allhands] 11/30/17 Seminar with Carsten Schultz
by Flowers, Nicole 27 Nov '17

27 Nov '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Carsten Schultz Northwestern University Tools for imaging and manipulating signaling networks November 30, 2017 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 11/16/17 Seminar with Neda Bagheri
by Flowers, Nicole 13 Nov '17

13 Nov '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Neda Bagheri Northwestern University An in silico study of emergent dynamics in a cancer microenvironment November 16, 2017 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Assistant or Associate Professor Cryo-Em Position
by Andrej Sali 10 Nov '17

10 Nov '17

Sent from my iPhone Begin forwarded message: > From: "Schwartz, Suzanne" <suschwar(a)indiana.edu> > Date: November 10, 2017 at 11:22:38 AM PST > To: "sali(a)salilab.org" <sali(a)salilab.org> > Subject: Assistant or Associate Professor Cryo-Em Position > > Dear Colleague, > > As a leader in the field of Cryo-EM in structural biology, we would appreciate it if you could forward the attached advertisement for a tenure track faculty position to colleagues that use Cryo-EM as their primary research tool. > > Indiana University is working to build its community of structural biologists, particularly in cryo-electron microscopy. IU has several investigators actively using Cryo-EM using instruments at IU and neighboring facilities. The IU EM facility includes a JEOL 3200FS equipped with a DE64 direct electron detection camera. Importantly, we have the commitment for funding and have begun the process of purchasing a Talos Arctica electron microscope equipped with a Gatan K3 camera. > > Interested candidates should upload a completed application and arrange for four letters of recommendation by December 15, 2017. > > > Thank you for your help. > Sincerely, > > Dr. Adam Zlotnick > Professor and Chair of Search Committee > Department of Molecular and Cellular a Biochemistry > Indiana University >

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[Compbio-allhands] TODAY! 11/9/17 Peter Kollman Lectureship with Arieh Warshel
by Flowers, Nicole 09 Nov '17

09 Nov '17

TODAY! -- PETER A. KOLLMAN LECTURESHIP Arieh Warshel USC Thursday, November 9, 2017 4:00 PM Genentech Hall Byers Auditorium - UCSF Mission Bay Campus Livestream: http://tiny.ucsf.edu/LF29og Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 11/9/17 Peter Kollman Lectureship with Arieh Warshel
by Flowers, Nicole 08 Nov '17

08 Nov '17

PETER A. KOLLMAN LECTURESHIP Arieh Warshel USC Thursday, November 9, 2017 4:00 PM Genentech Hall Byers Auditorium - UCSF Mission Bay Campus Livestream: http://tiny.ucsf.edu/LF29og Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] REMINDER Today: Dr. Herman van Vlijmen -- PH-OCS & ACS COMP Together Seminar Series
by magdalena K 07 Nov '17

07 Nov '17

PH-OCS & ACS COMP Together Seminar Reminder: Dr. Herman van Vlijmen (Johnson & Johnson), Tuesday Nov 7th at 7pm Food and posters start at 6pm. > > Hello UCSF Pharmaceutical Chemistry Postdocs and Community, > > Please join us for the Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) > > If you would like to attend this COMP Together event, please register at the COMP website: > http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38>. > > Poster Submission: > Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together on Nov 7": > johanna.jansen(a)novartis.com <mailto:johanna.jansen@novartis.com>, wei.binqing(a)gene.com <mailto:wei.binqing@gene.com>, siegfried.leung(a)circlepharma.com <mailto:siegfried.leung@circlepharma.com>, Uli.Schmitz(a)gilead.com <mailto:Uli.Schmitz@gilead.com>, xtal.ca(a)gmail.com <mailto:xtal.ca@gmail.com> > We will confirm availability of a poster slot by October 31st. > >

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[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium with Dr. Herman van Vlijmen, Nov 7th
by magdalena K 02 Nov '17

02 Nov '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, Please join us for the Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) If you would like to attend this COMP Together event, please register at the COMP website: http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=38>. Poster Submission: Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together on Nov 7": johanna.jansen(a)novartis.com <mailto:johanna.jansen@novartis.com>, wei.binqing(a)gene.com <mailto:wei.binqing@gene.com>, siegfried.leung(a)circlepharma.com <mailto:siegfried.leung@circlepharma.com>, Uli.Schmitz(a)gilead.com <mailto:Uli.Schmitz@gilead.com>, xtal.ca(a)gmail.com <mailto:xtal.ca@gmail.com> We will confirm availability of a poster slot by October 31st. ———————————————————————————————————————— The COMP Together champions in your area would like to announce the following event: Speaker: Dr. Herman van Vlijmen Title: Poster session and seminar "The Use of FEP to Drive Drug Discovery at Janssen: BACE and PDE2 Inhibitor Design" Date: 2017-11-07 Time: 6:00 PM Event ID: 38 Sponsor: Novartis Location UCSF 1700 4th St. UCSF Mission Bay - GH114N San Francisco CA 94158 Note that we decided to only host one speaker, to allow plenty of time for discussion. We expect many of you have experience with FEP in drug discovery or questions about FEP in drug discovery, so we count on you to bring your questions and your experience. Schedule: 6-7 pm: Poster session (pizza and drinks provided) 7-8 pm: Seminar & discussion "The Use of FEP to Drive Drug Discovery at Janssen: BACE and PDE2 Inhibitor Design" a seminar by Herman van Vlijmen 8-9 pm: Opportunity for extended discussion on FEP or any of the posters The location is the same as the event in October, GH114N Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com <mailto:atjohanna.jansen@novartis.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>

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[Compbio-allhands] 11/2/17 Seminar with Hassane Mchaourab
by Flowers, Nicole 27 Oct '17

27 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Hassane Mchaourab Vanderbilt Principles of Energy Transduction and Alternating Access of ABC Transporters November 2, 2017 D. Minor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Doctoral and Post-Doctoral Positions Open
by Andrej Sali 20 Oct '17

20 Oct '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Michnick Stephen <stephen.michnick(a)umontreal.ca> > Subject: Doctoral and Post-Doctoral Positions Open > Date: October 19, 2017 at 3:03:02 PM PDT > To: Michnick Stephen <stephen.michnick(a)umontreal.ca> > > Dear Colleague, > > I would appreciate if you could kindly post the attached announcement in your lab or department. > > Apologies if you received this message more than once. > > Thanks, > > Steve > ______________________________ > > Stephen Michnick Ph.D. F.R.S.C. (UK) > Professor > Canada Research Chair in Cell Architecture and Dynamics > Département de Biochimie > Université de Montreal > C.P. 6128, > Succ. Centre-Ville > Montreal, Quebec, > Canada H3C 3J7 > Bur/office: (514) 343-5849 > Fax: (514) 343-2010 > Lab: (514) 343-6111 Ext. 3205 > http://michnick.bcm.umontreal.ca > > Adresse pour/Address for FEDEX/livraison: > Département de Biochimie > Pavillon Roger-Gaudry, E-523 > Université de Montreal > 2900 Blvd. Edouard-Montpetit > Montreal, Quebec, Canada >

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[Compbio-allhands] 10/26/17 Seminar with HARC Speaker Wes Sundquist
by Flowers, Nicole 19 Oct '17

19 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og [cid:image001.png@01D348E0.5A74E200] Wes Sundquist Utah Harnessing and Inhibiting the ESCRT Virus Budding Pathway October 26, 2017 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 10/19/17 Seminar with Andre Levchenko
by Flowers, Nicole 16 Oct '17

16 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Andre Levchenko Yale Are signaling networks Rube Goldberg machines? Information processing vs. Network structure October 19, 2017 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Jacobson, Matt 11 Oct '17

11 Oct '17

Begin forwarded message: From: Greg Lakatos <glakatos(a)zymeworks.com<mailto:glakatos@zymeworks.com>> Subject: Employment opportunity in computational protein modeling for a student or postdoc Date: October 11, 2017 at 1:56:20 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Dear Professor Jacobson, I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com<http://www.zymeworks.com/>). Thank you for your time and assistance. Sincerely, Greg Lakatos Principal Scientist and Simulations Team Lead Zymeworks Inc. Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

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[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Andrej Sali 11 Oct '17

11 Oct '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Greg Lakatos <glakatos(a)zymeworks.com> > Subject: Employment opportunity in computational protein modeling for a student or postdoc > Date: October 11, 2017 at 1:59:15 PM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Professor Sali, > > I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com <http://www.zymeworks.com/>). > > Thank you for your time and assistance. > > Sincerely, > > Greg Lakatos > Principal Scientist and Simulations Team Lead > Zymeworks Inc. > > Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

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[Compbio-allhands] 10/12/17 Seminar with Peng Wu
by Flowers, Nicole 10 Oct '17

10 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Peng Wu Scripps Chemoenzymatic glycan labeling; methods and applications October 12, 2017 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium, Thursday, October 5th, 6-9 pm
by magdalena K 03 Oct '17

03 Oct '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, A reminder of the upcoming event on Thursday. Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) Please register so that we can have an accurate headcount for the food order. http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37> If you want to present a poser, please follow this link (space is limited): www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> Thanks and look forward to seeing you there. ——————————————————————————————- When: Thursday, October 5th, 6-9 pm Where: UCSF Mission bay, Genentech Hall Room GH114N If you would like to present a poster please visit: www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> If you would like to register for the event only, please visit: www.tiny.cc/UCSF-Comp <http://www.tiny.cc/UCSF-Comp> 6-7pm Poster session (food and refreshments provided); 7-8pm Two talks 1) Huifen Chen (Genentech), Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project 2) Alan Cheng (Merck), Designing Beyond Rule of 5 Molecules for Tough Targets 8-9pm Poster session;

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[Compbio-allhands] Reminder: Special seminar today: Vijay Pande, Fri Sep22, 3:30 pm, GH-N436A
by Pasquini, Millo 22 Sep '17

22 Sep '17

------------ From: Jacobson, Matt Sent: Monday, September 18, 2017 10:39 AM To: allhands(a)compbio.ucsf.edu<mailto:allhands@compbio.ucsf.edu>; Pharm Chem Faculty Subject: Special seminar: Vijay Pande, Fri Sep22, 3:30 pm, GH-N436A I will be hosting Vijay Pande for a special seminar Friday Sep 22, 3:30 pm, GH-N436A Many of you know Vijay. Over the past few years, he has split his time between Andreessen Horowitz and his academic lab at Stanford, which remains quite active: https://profiles.stanford.edu/vijay-pande?tab=publications. In this informal seminar, he will discuss his current interests, including his ongoing work on molecular dynamics methodology and applications, as well as newer interests in machine learning. Please join us! - Matt Millo Mau Pasquini MSO/Director of Administration Pharmaceutical Chemistry X6-1915

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[Compbio-allhands] Fwd: Postdoc and PhD add
by Andrej Sali 22 Sep '17

22 Sep '17

> Begin forwarded message: > > From: "Heck, A.J.R. (Albert)" <A.J.R.Heck(a)uu.nl> > Subject: Postdoc and PhD add > Date: September 21, 2017 at 11:37:17 PM PDT > To: Brandon Ruotolo <bruotolo(a)umich.edu> > > Dear all, > > We do have some exciting vacancies in the group both at postdoc and PhD level. > Please notify potential candidates. > > Thank you, > > Albert > > Want to see the movie we made on the Cyanobacterial Clock system; www.hecklab.com/molecularclock/ <https://www.hecklab.com/molecularclock/> > > Want to know more on our proteomics research? Check out this movie <https://www.youtube.com/watch?v=1G6jTGAfgUc&feature=youtu.be>made in our laboratory > — > Prof. dr. Albert J. R. Heck > Scientific Director Netherlands Proteomics Centre and > Scientific Director Utrecht Institute for Pharmaceutical Sciences > > www.hecklab.nl <http://www.hecklab.nl/><http://www.hecklab.nl/ <http://www.hecklab.nl/>> > Biomolecular Mass Spectrometry and Proteomics > Bijvoet Center for Biomolecular Research and > Utrecht Institute for Pharmaceutical Sciences > Utrecht University > Padualaan 8, 3584 CH Utrecht, The Netherlands > E-mail: a.j.r.heck(a)uu.nl <mailto:a.j.r.heck@uu.nl><mailto:a.j.r.heck@uu.nl <mailto:a.j.r.heck@uu.nl>> > > Tel: +31-30-2536797 > >

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[Compbio-allhands] Fwd: An announcement from COMP Together
by Jacobson, Matt 21 Sep '17

21 Sep '17

Begin forwarded message: From: <comp_together(a)acscomp.org<mailto:comp_together@acscomp.org>> Subject: An announcement from COMP Together Date: September 21, 2017 at 12:05:55 AM PDT To: Matthew Jacobson <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Reply-To: BinQing Wei <wei.binqing(a)gmail.com<mailto:wei.binqing@gmail.com>> The COMP Together champions in your area would like to announce the following event: Speaker: Huifen Chen (Genentech), Alan Cheng (Merck) Title: Posters and Talks by COMP Together & UCSF Pharm Postdocs Date: 2017-10-05 Time: 6:00 PM Event ID: 37 Sponsor: Gilead, Genentech Location Genentech 1700 4th St. GH114N UCSF Mission Bay San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) Schedule: 6 – 7 pm: Poster session (pizza and drinks provided) 7 – 7:30 pm: Talk #1 Title: Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project Speaker: Huifen Chen (Genentech) 7:30 – 8.00 pm: Talk #2 Title: Designing Beyond Rule of 5 Molecules for Tough Targets Speaker: Alan Cheng (Merck) 8 – 9 pm: Poster session Notes: Please note the new room #: GH114N Non-UCSF affiliated participants please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit: http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37. If you have any questions about this event, please contact BinQing Wei atwei.binqing(a)gmail.com<mailto:atwei.binqing@gmail.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php

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[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium, Thursday, October 5th, 6-9 pm
by magdalena K 21 Sep '17

21 Sep '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, Please join us for the Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) When: Thursday, October 5th, 6-9 pm Where: Genentech Hall, Room GH114N If you would like to present a poster please visit: www.tiny.cc/UCSF If you would like to register for the event only, please visit: www.tiny.cc/UCSF-Comp 6-7pm Poster session (food and refreshments provided); 7-8pm Two talks 1) Huifen Chen (Genentech), Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project 2) Alan Cheng (Merck), Designing Beyond Rule of 5 Molecules for Tough Targets 8-9pm Poster session; Notes: Please note the new room #: GH114N Non-UCSF affiliated participants please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit: http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you have any questions about this event, please contact BinQing Wei atwei.binqing(a)gmail.com <mailto:atwei.binqing@gmail.com>. If you would like to COMP register for Together, please visit http://app.acscomp.org/COMP_Together/reg_form.php If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>

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[Compbio-allhands] Fwd: Two Wellcome Trust Funded Post-Doctoral Positions Available
by Andrej Sali 20 Sep '17

20 Sep '17

> Begin forwarded message: > > From: Sarah-jane Scard <sarah-jane.scard(a)bioch.ox.ac.uk> > Subject: Two Wellcome Trust Funded Post-Doctoral Positions Available > Date: September 20, 2017 at 3:26:43 AM PDT > To: "'sali(a)salilab.org'" <sali(a)salilab.org> > > Dear Andrej, > > We have two Wellcome Trust-funded post-doctoral positions currently available, as part of a newly funded project called “LipID”. These positions are for 3 years each, with the possibility of extension to 5 years. > > The aim of the project is to study and characterise lipid interactions with membrane proteins through multi-scale molecular simulation. > > The deadline for applications is 12:00 (UK) on Friday the 13th October. > > Further details can be found here: > http://www.bioch.ox.ac.uk/aspsite/index.asp?sectionid=vacancies&job=130967 <http://www.bioch.ox.ac.uk/aspsite/index.asp?sectionid=vacancies&job=130967> > > Please forward to any students or postdocs in your group that you think would be interested. > > Many thanks & best wishes, > > Mark Sansom & Phill Stansfeld > > > > > Best wishes > > Mark > > ========================================================================== > Prof. Mark S.P. Sansom > David Phillips Professor of Molecular Biophysics & Head of Department > Dept. of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU > > e-mails: > mark.sansom(a)bioch.ox.ac.uk <mailto:mark.sansom@bioch.ox.ac.uk> - for research & teaching > > website: http://sbcb.bioch.ox.ac.uk <http://sbcb.bioch.ox.ac.uk/> > head(a)bioch.ox.ac.uk <mailto:head@bioch.ox.ac.uk> - for Head of Department's business > > phone: > (0)1865-613306 (personal office) > (0)1865-613212 (Head of Department's office) > > PA: Ms. Sarah-jane Scard (0)1865-613212; head(a)bioch.ox.ac.uk <mailto:head@bioch.ox.ac.uk>

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[Compbio-allhands] Fwd: Postdoc and Ph.D. positions in modeling proteins, pathways, or omics data
by Andrej Sali 19 Sep '17

19 Sep '17

> Begin forwarded message: > > From: Yang Shen <yshen(a)tamu.edu> > Subject: Postdoc and Ph.D. positions in modeling proteins, pathways, or omics data > Date: September 18, 2017 at 11:38:26 PM PDT > To: Yang Shen <yshen(a)tamu.edu> > > Dear Colleagues, > > I am looking for a postdoc research associate to work on mechanistic studies of disease-associated mutational effects on proteins, biomolecular pathways, and phenotypes. I would greatly appreciate your help of directing appropriate candidates my way or forwarding this message. > > The ideal candidates would have strong technical background in algorithms, programming, and database / web server and preferably some background in modeling protein structures and protein interactions / modeling biomolecular pathways and networks / analyzing omics data and predicting phenotypes. More details can be found at the end of this email. > > Besides postdoc researchers, I am also recruiting Ph.D. students to join my group. Thank you again for your help! > > Sincerely, > Yang > > Yang Shen > Assistant Professor > Center for Bioinformatics and Genomic Systems Engineering > Department of Electrical and Computer Engineering > Texas A&M University > https://engineering.tamu.edu/electrical/people/shen-yang <https://engineering.tamu.edu/electrical/people/shen-yang> > yshen(a)tamu.edu <mailto:yshen@tamu.edu> > > ---------------------------------------------------- > > Postdoc research associates in bioinformatics / computational biology > > > Postdoctoral research associates in bioinformatics / computational biology are sought in the group of Prof. Yang Shen in the Department of Electrical and Computer Engineering at Texas A&M University. The topic involves algorithm development and application for mechanistic studies of disease-associated mutational effects on proteins and protein interactions, biomolecular pathways and networks, and phenotypes. Interested candidates please send a cover letter with research interests, curriculum vita, and a list of 3 reference contacts to yshen(a)tamu.edu <mailto:yshen@tamu.edu>. > > > Qualifications: > > 1. Ph.D. in bioinformatics, computational biology, computational chemistry, computational biophysics, computer science, applied mathematics, operations research, engineering, or other related fields; > > 2. Algorithm development experience in one or more following areas is highly preferred: optimization, machine learning, probabilistic graphical models, causal analysis, systems and control theory, data mining, statistics, or other related methods. > > 3. Experience and track record in at least one application area is preferred: > > (1) Protein modeling. Examples include sequence co-evolution analysis, protein structure prediction, protein-protein or protein-ligand docking, conformational flexibility and search, normal modes, and molecular dynamics; OR > > (2) Biomolecular network modeling. Examples include pathway analysis, graph-theoretic algorithms, differential equations, Boolean networks, and Petri nets; OR > > (3) Biological data analysis. Examples include data integration and pattern recognition in genomic, proteomic, transcriptomic, phenomic, and other omic data, genotype-phenotype association, and pQTL. > > 4. Linux programming experience in implementing algorithms (required) and databases & web servers (plus) in one or more following languages: C/C++, Python, shell scripting, Perl, SQL, XML, PHP, JavaScript, and Java. > > > College Station is conveniently located in the middle of a triangle formed by 3 of the 10 largest cities in the United States: Houston (1.5-hour drive), Dallas, and San Antonio; and is within 2-hour drive from Austin, the capital of Texas. The city is one of the fastest growing metro in the US (2nd in 2009-13 and15th in 2015) and a frequent choice of the Forbes top 10 list of best small places for business and careers. The Dwight Look College of Engineering ties at the 11th among all US engineering graduate schools (US News 2018). > > > Texas A&M University is an Equal Opportunity employer. > > >

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[Compbio-allhands] Fwd: The Rockefeller University Open Faculty Search: Application deadline Oct 2, 2017
by Andrej Sali 18 Sep '17

18 Sep '17

> Begin forwarded message: > > From: Charles Rice <ricec(a)mail.rockefeller.edu> > Subject: The Rockefeller University Open Faculty Search: Application deadline Oct 2, 2017 > Date: September 18, 2017 at 2:41:47 PM PDT > To: Charles Rice <ricec(a)mail.rockefeller.edu> > > Dear Colleague, > > Under the leadership of our President, Richard P. Lifton, The Rockefeller University continues its effort to recruit outstanding new Heads of Laboratory in any area of biology, biomedicine, and related sciences. The right candidate will have a creative and rigorous research program and will be highly interactive with our small but exceptional research community. In return, The Rockefeller University is committed to fostering outstanding scientists through a superb research environment and resources to promote innovative research. > > We are writing to seek your help in identifying highly motivated, creative and innovative scientists working in any of the following major areas of research: > > - Biochemistry, Biophysics, Chemical Biology, and Structural Biology > - Cancer Biology > - Cell Biology > - Genetics and Genomics > - Neurosciences and Behavior > - Immunology, Virology, and Microbiology > - Organismal Biology and Evolution > - Mechanisms of Human Disease > - Physical, Mathematical, and Computational Biology > - Stem Cells, Development, Regeneration, and Aging > > The Search Committee would greatly appreciate your assistance in encouraging exceptional candidates to apply. We seek tenure-track faculty candidates possessing either a Ph.D. degree, M.D. degree, or both. We also welcome applicants from tenured scientists at an early stage of their career. Applications are being accepted electronically through our Online Application System at http://oas.rockefeller.edu <http://oas.rockefeller.edu/>. Our application deadline is October 2, 2017. > > We would also be grateful for your suggestions of specific candidates we should consider. We are especially interested in the names of any women or minority candidates. Please forward any recommendations you may have to facultysearch(a)rockefeller.edu <mailto:facultysearch@rockefeller.edu>. > > Further information regarding our current search can be found in the attached advertisements and at http://www.rockefeller.edu/facultysearch <http://www.rockefeller.edu/facultysearch>. > > We very much appreciate your help with this important effort. > > Best regards, > > Charlie Rice > Chair, 2017-2018 Faculty Search > Professor, Laboratory of Virology and Infectious Disease > The Rockefeller University > > >

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[Compbio-allhands] Special seminar: Vijay Pande, Fri Sep22, 3:30 pm, GH-N436A
by Jacobson, Matt 18 Sep '17

18 Sep '17

I will be hosting Vijay Pande for a special seminar Friday Sep 22, 3:30 pm, GH-N436A Many of you know Vijay. Over the past few years, he has split his time between Andreessen Horowitz and his academic lab at Stanford, which remains quite active: https://profiles.stanford.edu/vijay-pande?tab=publications. In this informal seminar, he will discuss his current interests, including his ongoing work on molecular dynamics methodology and applications, as well as newer interests in machine learning. Please join us! — Matt

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[Compbio-allhands] Fwd: Group leader position at EMBL
by Andrej Sali 12 Sep '17

12 Sep '17

fyi -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "Jan Ellenberg" <jan.ellenberg(a)embl.de> > Subject: Group leader position at EMBL > Date: September 12, 2017 at 7:50:24 AM PDT > To: sali(a)salilab.org > > Dear Andrej, > > I would like to draw your attention to the opening for a group leader position in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry or mathematics that want to pursue original and interdisciplinary research in cutting edge molecular cell biology, especially also in the areas of image analysis and/bioimage informatics and computational modelling of complex dynamic biological processes. > > We generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD, and provide them with very generous internal support and a highly collaborative environment for their first independent position. We therefore strongly encourage highly promising young and particularly also female candidates to apply. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > Jan > > > > Dr. Jan Ellenberg > Head, Cell Biology and Biophysics Unit > European Molecular Biology Laboratory (EMBL) > Meyerhofstr. 1 > D-69117 Heidelberg > Germany > > T +49-6221-387-8391 > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> > > > >

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[Compbio-allhands] Fwd: USC faculty search
by Andrej Sali 08 Sep '17

08 Sep '17

> Begin forwarded message: > > From: Frank Uwe Alber <alber(a)usc.edu> > Subject: USC faculty search > Date: September 8, 2017 at 10:13:22 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > I just want to point out that we have another faculty search going on this year, this time focusing on Multiscale Modeling / Systems Biology. > > https://usccareers.usc.edu/job/los-angeles/professor-open-rank-of-biologica… <https://usccareers.usc.edu/job/los-angeles/professor-open-rank-of-biologica…> > > It would be great if you could share the link with people who may be interested to apply. > > Thank you! > > Best, > Frank >

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[Compbio-allhands] SAVE THE DATE- PETER KOLLMAN LECTURESHIP- NOVEMBER 9, 2017
by Flowers, Nicole 07 Sep '17

07 Sep '17

SAVE THE DATE THURSDAY, November 9, 2017 AT 4:00 PM Arieh Washel USC PETER A. KOLLMAN LECTURESHIP GENENTECH HALL BYERS AUDITORIUM - UCSF MISSION BAY CAMPUS LIVE WEBCAST: http://tiny.ucsf.edu/LF29og Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Bioinformatics Scientist Position at Tenaya Therapeutics
by Tom Ferrin 31 Aug '17

31 Aug '17

-------- Forwarded Message -------- Subject: Bioinformatics Scientist Position at Tenaya Therapeutics Date: Wed, 30 Aug 2017 17:40:58 +0000 From: Carla Daniel <Carla(a)thecolumngroup.com> To: tef(a)cgl.ucsf.edu <tef(a)cgl.ucsf.edu>, babbitt(a)cgl.ucsf.edu <babbitt(a)cgl.ucsf.edu> Dear Professors Ferrin and Babbit, I manage recruiting for The Column Group, a VC here in SF that recently launched Tenaya Therapeutics. In our outreach for a Bioinformatics Scientist, Nathan Salomonis suggested that we connect with the two of you in hopes of reaching students in the PSPG and bioinformatics PhD programs. This will be the first Bioinformatics Scientist at Tenaya and the ideal candidate would have a strong biology background and an interest/ability to establish the functionality at the company. The position description is attached and we would welcome any referrals you might have, or simply sharing this opportunity with your students. Thank you for helping us in our outreach! Best, Carla *Carla Daniel* /Director of Recruiting/ office 415 865 2064 mobile 510 910 2449 email// carla(a)thecolumngroup.com <mailto:carla@thecolumngroup.com> website www.thecolumngroup.com <http://www.thecolumngroup.com/>

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[Compbio-allhands] Fwd: CryoEM Faculty Position
by Andrej Sali 30 Aug '17

30 Aug '17

> Begin forwarded message: > > From: STEFANIE RAE LANNOYE <slannoye(a)wisc.edu> > Subject: CryoEM Faculty Position > Date: August 30, 2017 at 11:12:38 AM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Sending on behalf of the UW Biochemistry CryoEM Faculty Search Committee. > > > Dear Andrej, > > The Department of Biochemistry at the University of Wisconsin-Madison is searching for an individual with an outstanding record of teaching and research relevant to high-resolution cryo-electron microscopy of biomolecules or cellular function. Attached please find a letter with more information and a flyer describing this position, which has been posted with a closing date of October 31, 2017 but will remain open until a successful candidate is hired. > > We would greatly appreciate your bringing this to the attention of individuals who will bring exceptional potential to advance a contemporary area of cellular or molecular biosciences and strength in the science of cryo-electron microscopy. > > Thank you, > > CryoEM Faculty Search Committee > Brian Fox, John Markley, Bob Landick, Sam Butcher, Marisa Otegui, Paul Ahlquist, Katrina Forest, Anjon Audhya > >

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[Compbio-allhands] Fwd: postdoctoral positions
by Andrej Sali 10 Aug '17

10 Aug '17

> Begin forwarded message: > > From: Jan Kosinski <kosinski(a)embl.de> > Subject: postdoctoral positions > Date: August 10, 2017 at 10:11:50 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > Thanks for your offer of spreading the message about the postdoctoral positions in my group! > > So, the postdoctoral positions are now available in my group in the areas of: > > 1) integrative modeling of infection cycles using network biology and pathway modeling methods > https://www.embl.de/jobs/searchjobs/index.php?ref=HH_00123 <https://www.embl.de/jobs/searchjobs/index.php?ref=HH_00123> > 2) integrative structure modeling of protein complexes. > https://www.embl.de/jobs/searchjobs/index.php?ref=HH_00122 <https://www.embl.de/jobs/searchjobs/index.php?ref=HH_00122> > > My group is located at EMBL Hamburg (https://www.embl-hamburg.de/research/unit/kosinski/ <https://www.embl-hamburg.de/research/unit/kosinski/>) and Centre for Structural Systems Biology (CSSB, http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html <http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html>). Please see the above links and the attached PDF for details. > > There is also a possibility of applying for EIPOD fellowship: https://www.embl.de/training/postdocs/08-eipod/ <https://www.embl.de/training/postdocs/08-eipod/> > > I would be grateful if you could spread or forward this information to anyone who might be interested! > > Thanks in advance, > Jan > > > >

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[Compbio-allhands] Molecular Modeler/Computational Chemist/Drug Design at Protagonist Therapeutics
by Andrej Sali 01 Aug '17

01 Aug '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Positions Available
by Andrej Sali 21 Jul '17

21 Jul '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "Gregory A. Voth" <gavoth(a)uchicago.edu> > Subject: Positions Available > Date: July 21, 2017 at 11:54:41 AM PDT > > > Dear Colleague, > > There is the possibility of two postdoc positions in my group, subject to the qualifications and experience of the applicants, as well as the final availability of funding. > > The first project will involve simulations of complex membranes and proteins/peptides interacting with them, at both the all-atom and coarse-grained levels. Experience with MD simulation is required, and preferably also with free energy sampling techniques such as umbrella sampling, replica exchange, and metadynamics. > > The second postdoc position will involve the development of CG simulation software in the LAMMPS MD code environment. Significant experience with MD simulation as well as the programming related to it is required. > > Please ask any interested student in your group to contact me by email. > > Best wishes, > Greg > > _____________________________________________________________________ > > Gregory A. Voth, Ph.D. > Haig P. Papazian Distinguished Service Professor > Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics > > Department of Chemistry > The University of Chicago > 5735 S. Ellis Avenue > Chicago, Illinois 60637 > Phone: 773-702-9092 > Fax: 773-795-9106 > Administrative Assistant: 773-702-9096 > Email: gavoth(a)uchicago.edu <mailto:gavoth@uchicago.edu> > Group Web Site: vothgroup.uchicago.edu <http://vothgroup.uchicago.edu/> > ____________________________________________________________________ > > > > > > >

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[Compbio-allhands] Fwd: Postdoc position in computational biophysics/biology
by Andrej Sali 13 Jul '17

13 Jul '17

Sent from my iPhone Begin forwarded message: > From: Guowei Wei <wei(a)math.msu.edu> > Date: July 13, 2017 at 5:21:09 AM GMT+2 > To: "Wei, Guowei" <wei(a)math.msu.edu> > Subject: Postdoc position in computational biophysics/biology > > Dear Colleagues, > I am looking for a motivated postdoc to join my group. The research project can be anything involving one of the following topics: 1) variational multiscale modeling of biomolecular systems, 2) machine learning/deep learning prediction of biomolecular structures, function, dynamics and transport, and 3) analysis and characterization of biomolecules using algebraic topology, differential geometry or graph theory. > > The ideal candidate should have experience with biophysical, biochemical or mathematical modeling and computation of biomolecules. Requirements include a Ph.D. in either Mathematics, Physics, Computational Biology, Computer Science or other quantitative science and experience on computational biological science. Interested applicants should write to weig(a)msu.edu and include a CV. > > Best regards > > Guowei > ----------------------------------------------------------------------- > Guowei Wei, > Professor > Departments of Mathematics, > Electrical and Computer Engineering, and > Biochemistry and Molecular Biology > Michigan State University > http://math.msu.edu/~wei > ----------------------------------------------------------------------- > >

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[Compbio-allhands] Fwd: RCSB Protein Data Bank Position Available at UCSD
by Andrej Sali 06 Jul '17

06 Jul '17

> Begin forwarded message: > > From: "Stephen K. Burley Rutgers Proteomics" <sburley(a)proteomics.rutgers.edu> > Subject: RCSB Protein Data Bank Position Available at UCSD > Date: July 6, 2017 at 10:57:27 PM GMT+2 > To: "Dr. Sali" <sali(a)salilab.org> > > Andrej: > > I would be most grateful if you could circulate the > job posting below to anyone you think would benefit > from continuing their career at RCSB PDB West > > With thanks in advance and best wishes SKB > > http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/contact/j… > > Scientific Software Developer > > Develop, implement, and maintain complex scientific and web-based software > systems for the RCSB Protein Data Bank (PDB; http://www.rcsb.org) at the > University of California San Diego (UCSD). > > The Scientific Software Developer will work closely and collaboratively > with other software developers and scientists at the San Diego > Supercomputer Center (SDSC) and the RCSB PDB partner sites to expand > RCSB.org's functionality and reliability as a premier biological data and > information resource. > > * Develop new scalable algorithms for the mining and analysis of the > rapidly growing PDB archive using leading edge Big Data technologies. > Design and implement user interfaces for the query, analysis, reporting, > and visualization of 3D structural information and associated annotations. > * Integrate external database resources with RCSB PDB to provide a > structural view of biology. Help lead the design of databases and data > warehouses to store and aid in the query of data. > * Recommend and implement changes in software development, maintenance and > system standards for analysis algorithms, tools, and infrastructure. > * Serve as a recognized expert on relevant scientific and technical > aspects of the various web, web services, and database components of the > RCSB PDB. Stays abreast of the latest development in structural and > computational biology and new technologies. > * Applies advanced bioinformatics concepts to design, develop, modify, > debug, and evaluate highly complex software programs and web tools. > Translates scientific problems into scalable and maintainable software > solutions that meet end user needs. > > Qualifications: Advanced understanding of programming in one or more > languages is required (Java, Python or Javascript); In-depth understanding > of Bioinformatics; understanding of Biology or Chemistry; and an advanced > degree > > Postdoctoral Fellows > > The Challenge: Develop innovative analysis, integration, query, and > visualization tools for 3D biomolecular structures to help accelerate > research and training in biology, medicine, and related disciplines. In > these projects, we employ the latest advances in computer science to > develop highly interactive features and scalable services and workflows. > The overall goal is always to develop highly interactive features for the > RCSB PDB website. > > Two positions are available: one focused on Visualization and on one > Macromolecular Structure/Biological Assemblies. Possible project areas > include: > > * Innovative representations for 3D structural data, including biological > assemblies > * Visualizations for comparative analyses > * Multiscale rendering for exploring large structures > * Using machine learning to build the next generation search engine for > molecular biology > > >

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[Compbio-allhands] Fwd: computational chemistry position at Amgen
by Jacobson, Matt 29 Jun '17

29 Jun '17

-- Matt Sent from my iPhone Begin forwarded message: From: "Andrews, Kristin" <kmeagher(a)amgen.com<mailto:kmeagher@amgen.com>> Date: June 29, 2017 at 3:15:01 PM EDT To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Subject: computational chemistry position at Amgen Dear Professor Jacobson, Amgen is looking for a talented computational chemist to join our group in Cambridge, MA. Please pass along the job listing below to any outstanding graduate students or post-docs who might be looking for a position. https://careers.amgen.com/job/7483540/scientist-computational-chemist-cambr… Thanks, Kristin Andrews, Ph.D. Amgen Inc 360 Binney St. Cambridge, MA 02142

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[Compbio-allhands] Fwd: Lilly Biotechnology San Diego Computational Chemistry job opening
by Andrej Sali 28 Jun '17

28 Jun '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Michal Vieth <vieth_michal(a)lilly.com> > Subject: Lilly Biotechnology San Diego Computational Chemistry job opening > Date: June 28, 2017 at 6:45:33 PM GMT+2 > To: Charles Brooks <brookscl(a)umich.edu>, Benoit Roux <roux.uchicago(a)gmail.com>, "jens(a)meilerlab.org" <jens(a)meilerlab.org>, "ruben(a)ucsd.edu" <ruben(a)ucsd.edu>, "adam.godzik(a)gmail.com" <adam.godzik(a)gmail.com>, Wonpil Im <woi216(a)lehigh.edu>, "Andrej Sali (sali(a)salilab.org) (sali(a)salilab.org)" <sali(a)salilab.org>, Ingo Mugge <Ingo.Mugge(a)alkermes.com> > > Colleagues, > I hope this message finds you in good spirits. > > Should you have any students, postdocs interested in working here in Lilly Biotechnology Center in San Diego, please have them apply for this entry level position: > > https://careers.lilly.com/job/san-diego/computational-research-scientist/41… <https://careers.lilly.com/job/san-diego/computational-research-scientist/41…> > > It is super exciting place to work, do research and interact with top scientists from other disciplines in biotech like setting, > > Best regards, > michal > > *************************************************************** > Dr hab. Michal Vieth, PhD > Discovery Chemistry Research > Lilly Biotechnology Center, San Diego, Ca 92121 > (317)277-3959, m.vieth(a)lilly.com <mailto:m.vieth@lilly.com> > *************************************************************** > This e-mail message (including any attachments) contains information that may be confidential and/or privileged. If you are not the intended recipient, please do not read, use, copy or disclose to anyone the e-mail message (or attachments) or any information contained in the e-mail message (or attachments). If you have received or obtained this e-mail message (or attachments) in error, please notify the sender by return e-mail (m.vieth(a)lilly.com <mailto:m.vieth@lilly.com>)

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[Compbio-allhands] Fwd: Biophysicist at Orthogon Therapeutics
by Brian Shoichet 30 May '17

30 May '17

FYI ---------- Forwarded message ---------- From: Guillaume Poncet-Montange <gponcet(a)orthogontherapeutics.com> Date: Tue, May 30, 2017 at 2:42 PM Subject: Biophysicist at Orthogon Therapeutics To: bshoichet(a)gmail.com Cc: Ali Munawar <amunawar(a)orthogontherapeutics.com> Hi Brian (Ccied Ali Munawar, CEO of OrthogonTherapeutics), I hope you are doing well. Cindy and I have moved from Houston to Boston a year ago and we are now working in 2 different biotechs. I am leading the structural biology group at Orthogon Therapeutics,LLC. I am contacting you because we are looking for a biophysicist (entry level) with a strong knowledge in measuring fragment affinities by ITC. We are a FBDD start-up and this person should have a biochemistry background and ideally some computational chemistry skills. I thought that you may have some candidates in mind who could be a good fit. I have attached the job posting. Looking forward to hearing back from you, Best, Guillaume Guillaume Poncet-Montange, Pharm.D., Ph.D. Senior Scientist, Orthogon Therapeutics, LLC 960 Turnpike Street, Unit 10, Canton, MA 02021 Office: (339)-502-9108 <(339)%20502-9108> Cell: (415)-630-0492 <(415)%20630-0492> email: gponcet(a)orthogontherapeutics.com -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Ian Wilson‘s lab at ShanghaiTech is looking for research associate/assisstant professors
by Andrej Sali 24 May '17

24 May '17

below -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "zhaosw(a)shanghaitech.edu.cn" <zhaosw(a)shanghaitech.edu.cn> > Subject: Ian Wilson‘s lab at ShanghaiTech is looking for research associate/assisstant professors > Date: May 23, 2017 at 4:55:34 PM PDT > To: sali <sali(a)salilab.org> > Cc: yangbei <yangbei(a)shanghaitech.edu.cn> > > Hi Andrej, > > Hope this email finds you well:) > > Ian Wilson's lab (focusing on antibody structural research by multi-approaches) is looking for research associate/assistant professors [like specialist at UCSF] in structural and computational biology fields. Ian's co-PI Bei (who is cc'ed) is responsible for the recruitment and she is searching for people with aboard experience, she really wants to get your help to spread the attached ad around UCSF. > > Thank you very much! > Suwen

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[Compbio-allhands] Fwd: Protein Modelling Post Doc – Mike Sternberg – Imperial College
by Andrej Sali 18 May '17

18 May '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Subject: FW: Protein Modelling Post Doc – Mike Sternberg – Imperial College > Date: May 18, 2017 at 9:33:37 AM PDT > > Dear Colleague > > I would be grateful if you would advertise > > Thanks > > Mike > --------------------------------------- > > Protein Modelling Post Doc – Mike Sternberg – Imperial College > Salary: £36,070 - £43,350 per annum > > Applications are invited for a Research Associate position to join the Structural Bioinformatics Group, within the Department of Life Sciences based at the South Kensington Campus. The post holder will work as a member of a small team that is developing methods for enhance protein structure prediction, using these methods to predict protein structures and mapping genetic variants to these structures. The post is part of a joint UK (funded by the BBSRC) and USA (funded by the NSF) grant. Our colleagues in the USA are the group of Prof Vakser (university of Kansas) who will be using our predicted structures as the basis to predict structures for protein complexes. > > You must have, or have submitted, a research orientated PhD (or equivalent) involving the development and application of software to a scientific problem, ideally applied to protein structure. You will have proven programming experience that results in the development of a substantive algorithm tackling a problem modelling protein structure. You will have experience in developing high-level code to a professional standard of robustness and clarity. You will have extensive knowledge and experience in code development in C (or variants) or Python, or Perl (or very close equivalent). Experience/knowledge developing scientific software to a standard suitable for public distribution is also essential. Experience of working with protein data bank files and a successful track record in academic publication where you made a substantial contribution to the project via computational work are desirable. Experience of developing web sites for use by the scientific community, ideally in bioscience or biomedicine and experience of database development, ideally in bioscience or biomedicine, are also desirable. Should you have any queries please contact: Professor Michael Sternberg by email: m.sternberg(a)imperial.ac.uk <mailto:m.sternberg@imperial.ac.uk> > This is a full time position, funded by the BBSRC available for up to 26.5 months, with a possibility of extension subject to funding. > Any candidate who has not been awarded their PhD, will be appointed as a Research Assistant within the salary range £31,740 - £33,370 per annum. > Closing Date 15 June 2017 (midnight BST) > How To Apply see: > https://www4.ad.ic.ac.uk/OA_HTML/OA.jsp?page=/oracle/apps/irc/candidateSelf… <https://www4.ad.ic.ac.uk/OA_HTML/OA.jsp?page=/oracle/apps/irc/candidateSelf…>

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[Compbio-allhands] 5/18/17 Seminar with Michael Burkart
by Flowers, Nicole 13 May '17

13 May '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1l49jp Michael Burkart UCSD Protein-protein interactions in acetate biosynthetic pathways May 18, 2017 R. Muir, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 5/11/17 Seminar with Nieng Yan
by Flowers, Nicole 05 May '17

05 May '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1l49jp Nieng Yan Tsinghua University A Molecular Movie of the Excitation-Contraction Coupling May 11, 2017 B. Huang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] ICHS Seminar Series: Jure Leskovec
by Rizk-Jackson, Angela 01 May '17

01 May '17

We invite you to join us for the next ICHS Seminar Series offering: "Scaled computation & inferential methods in biomedicine: Machine learning for biomedical applications” Jure Leskovec, PhD Associate Professor of Computer Science, Stanford University Chief Scientist, Pinterest Wednesday, May 17, 2017 @ 10am Lecture: 10-11am Reception: 11-11:30pm (light refreshments will be served) Mission Bay Campus: Mission Hall room 1400, 550 16th St About the Speaker: Jure’s research focuses on mining and modeling large social and information networks, their evolution, and diffusion of information and influence over them; and at Pinterest he works on machine learning problems. Early this year, he was selected as one of the initial cohort of Chan-Zuckerberg BioHub Investigators. RSVP here<https://ucsf.co1.qualtrics.com/jfe/form/SV_6GoMlf3CekJNLz7> Contact: Angela.Rizk-jackson(a)ucsf.edu<mailto:Angela.Rizk-jackson@ucsf.edu>

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[Compbio-allhands] PETER KOLLMAN LECTURESHIP- April 13, 2017
by Flowers, Nicole 07 Apr '17

07 Apr '17

Ron Dror Stanford Revealing the structural basis for GPCR drug action through atomic-level simulation. Thursday, April 13, 2017 3:00 PM PETER A. KOLLMAN LECTURESHIP Genentech Hall Byers Auditorium UCSF Mission Bay Campus Webcast: https://lecture.ucsf.edu/ets/Catalog/Full/6cc7b194adc54d1eb01b99ca12d91ec221 Reception in Byers Hall 2nd Floor Atrium at 4:30 pm. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Poster Submission: UCB/UCSF Computational Health Science Symposium
by Rizk-Jackson, Angela 04 Apr '17

04 Apr '17

Dear Colleagues, We would like to invite interested faculty, students, and staff to display posters of their work during the 4:30-6pm reception for the jointly sponsored UC Berkeley / UCSF Computational Health Science Symposium on April 25th at Mission Bay. Details of the event can be found here<https://www.eventbrite.com/e/uc-berkeley-ucsf-computational-health-science-…>. Please return the attached form as soon as possible if you would like to be considered for a poster spot at the reception. We are able to accommodate a limited number of posters during this session, and priority will be given on a first-come first-served basis. Feel free to let me know if you have any questions. Best, Angela Angela Rizk-Jackson, Ph.D. Director of Operations Institute for Computational Health Sciences University of California, San Francisco (415) 514-0537 Angela.Rizk-Jackson(a)ucsf.edu<mailto:Angela.Rizk-Jackson@ucsf.edu> <http://ichs.ucsf.edu/> <https://mail.ucsf.edu/owa/Angela.Rizk-jackson@ucsf.edu/ICHS.ucsf.edu> <applewebdata://B868DB3E-8FDA-4C59-B156-AEA5C76C0163/UrlBlockedError.aspx> ICHS.ucsf.edu<http://ichs.ucsf.edu/> <http://ichs.ucsf.edu/>

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[Compbio-allhands] 4/6/17 Seminar with George Peng Wang
by Flowers, Nicole 30 Mar '17

30 Mar '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: https://lecture.ucsf.edu/ets/Catalog/Full/6cc7b194adc54d1eb01b99ca12d91ec221 George Peng Wang Georgia State University Chemical biology concepts and experiments for everyone April 6, 2017 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 3/30/17 Seminar with
by Flowers, Nicole 24 Mar '17

24 Mar '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Patrick Griffin The Scripps Research Institute, Florida Differential HDX to Probe Ligand-Mediated Receptor Signaling March 30, 2017 B. DeGrado & A. Sali, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] RESCHEDULED: Jure Leskovec Seminar
by Rizk-Jackson, Angela 23 Mar '17

23 Mar '17

I am pleased to inform you that the ICHS Seminar featuring Jure Leskovec has been rescheduled. See below for info and mark your calendars! Reminders will be sent out as the date approaches. "Scaled computation & inferential methods in biomedicine: Machine learning for biomedical applications” Jure Leskovec, PhD Associate Professor of Computer Science, Stanford University Chief Scientist, Pinterest Wednesday, May 17, 2017 @ 10am Lecture: 10-11am Reception: 11-11:30pm (light refreshments will be served) Mission Bay Campus: Mission Hall 1400, 550 16th St About the Speaker: Jure’s research focuses on mining and modeling large social and information networks, their evolution, and diffusion of information and influence over them; and at Pinterest he works on machine learning problems. Contact: Angela.Rizk-jackson(a)ucsf.edu<mailto:Angela.Rizk-jackson@ucsf.edu>

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[Compbio-allhands] Fwd: Recuitment_computational biology by iHuman Institute ShanghaiTech University
by Jacobson, Matt 16 Mar '17

16 Mar '17

- Matt Dear Professors: This is a letter from iHuman Institute of ShanghaiTech University, Shanghai, China. Now we are seeking candidates for our Faculty and Postdoc Positions, who focus on computational biology, especially Whole Cell Modeling. It's an honor for us if you can recommend highly motivated and outstanding international candidates. You can get more details from the attached file. About iHuman: iHuman Institute is a new international effort established as a research institute located on the campus of ShanghaiTech University. The institute is a gateway to the world of Shanghai life science research. What makes iHuman Institute special is that it is focused exclusively on the basic and applied science of human cell signaling, integrating multiple tools for scientific discovery, and bringing together leading researchers throughout the world. Cell surface receptors and their related intracellular proteins are responsible for human cellular communications with each other and their environment, and are involved in a wide range of physiological activities. Such a central role in human biology makes cell signaling the target for intervention for tuning physiological responses and fighting numerous conditions and diseases. These proteins are central to understanding the evolution of mankind and human cognition at a molecular level. Please let us know if you have any questions, also you can contact us by replying the E-mail directly. Thank you for your time. iHuman HR Team http://ihuman.shanghaitech.edu.cn/ [cid:07755f86-88bf-4a6f-a3ca-c06c93f99b63] [cid:07AE44DF-E495-4781-B290-5DD2A125D5A3]

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[Compbio-allhands] informal seminar announcement
by Tom Ferrin 16 Mar '17

16 Mar '17

Please let students and other researchers in your lab know about the following informal seminar. Tristan has created a nice plug-in tool for our ChimeraX software that he'll talk about. * Tristan Croll * * PhD Student *Cambridge University * * *Friday, March 24* *2 - 3pm* *Genentech Hall S-203* *Title:* ISOLDE: a next-generation model-building environment for challenging molecular structures *Abstract:* Given an experimental dataset of sufficiently high resolution, modern model-building and refinement software can often build high-quality, near-complete models almost entirely automatically. However, as resolution degrades to the point where individual atoms are no longer resolved, the task becomes substantially more challenging and dependent upon user intervention. Current standards at these resolutions remain quite poor, with structures regularly deposited to the Protein Data Bank with outlier rates 1-2 orders of magnitude higher than expected of high resolution structures. ISOLDE is a set of tools which applies interactive molecular dynamics to significantly improve the ease and fidelity of model-building into such data, in essence by making the task feel similar to interacting with a real, physical molecule. In this seminar I will give a preview of the ISOLDE package and workflow, with examples from both EM and crystallographic structures.

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[Compbio-allhands] 3/16/17 Seminar with Emily Balskus
by Flowers, Nicole 15 Mar '17

15 Mar '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream URL available upon request Emily Balskus Harvard Chemical Discovery in the Human Microbiota March 16, 2017 F. Ugur, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Postdoc in Protein 3D Modelling Imperial College
by Andrej Sali 15 Mar '17

15 Mar '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Subject: FW: Postdoc in Protein 3D Modelling Imperial College > Date: March 15, 2017 at 5:56:23 AM MDT > > > Research Associate in Bioinformatics – Protein 3D Modelling > > Imperial College, Department of Life Sciences > > Salary £36,070 - £43,350 per annum > > Applications are invited for a Research Associate position to join the Structural Bioinformatics Group, within the Department of Life Sciences based at the South Kensington Campus. The post is part of a joint UK (funded by the BBSRC) and USA (funded by the NSF) grant. Our colleagues in the USA are the group of Prof Vakser (university of Kansas) who will be using our predicted structures as the basis to predict structures for protein complexes. > > The post holder will work as a member of a small team that is developing methods for enhance protein structure prediction, using these methods to predict protein structures and mapping genetic variants to these structures. > > You must have, or have submitted, a research orientated PhD (or equivalent) involving the development and application of software to a scientific problem, ideally applied to protein structure. You will have proven programming experience that results in the development of a substantive algorithm tackling a problem modelling protein structure. You will have experience in developing high-level code to a professional standard of robustness and clarity. You will have extensive knowledge and experience in code development in C (or variants) or Python, or Perl (or very close equivalent). Experience/knowledge developing scientific software to a standard suitable for public distribution is also essential. Experience of working with protein data bank files and a successful track record in academic publication where you made a substantial contribution to the project via computational work are desirable. Experience of developing web sites for use by the scientific community, ideally in bioscience or biomedicine and experience of database development, ideally in bioscience or biomedicine, are also desirable. > > Any candidate who has not been awarded their PhD, will be appointed as a Research Assistant within the salary range £31,740 - £33,370 per annum. > > This is a full time position, funded by the BBSRC available for up to 30 months. > Closing Date 5 April 2017 (Midnight GMT) > > For initial enquiries contact Prof Mike Sternberg m.sternberg(a)imperial.ac.uk <mailto:m.sternberg@imperial.ac.uk> > > For full details and application procedure see: > > > https://www4.ad.ic.ac.uk/OA_HTML/OA.jsp?page=/oracle/apps/irc/candidateSelf… <https://www4.ad.ic.ac.uk/OA_HTML/OA.jsp?page=/oracle/apps/irc/candidateSelf…>..

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