- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Next BBC Seminar on 6/8/23
by Flowers, Nicole 19 May '23

19 May '23

There will not be a BBC seminar again until June 8, 2023, with David Shaw, PhD. This seminar will only be over zoom- please look out for the announcement on 6/2/23! Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 5/18/23 BBC Seminar with Squire Booker, PhD
by Flowers, Nicole 12 May '23

12 May '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Squire Booker, PhD Pennsylvania State University A Radical Solution for C(sp3)–C(sp3) Bond Formation during the Biosynthesis of Macrocyclic Membrane Lipids May 18, 2023 D. Fujimori, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 5/11/23 BBC Seminar with Suzanne Walker, PhD
by Flowers, Nicole 08 May '23

08 May '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Suzanne Walker, PhD Harvard How Bacteria Move Acyl Groups from the Cytoplasm to Extracellular Polymers May 11, 2023 B. Zaro, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 5/11/23 BBC Seminar with Suzanne Walker, PhD
by Flowers, Nicole 05 May '23

05 May '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Suzanne Walker, PhD Harvard Bacteria Move Acyl Groups from the Cytoplasm to Extracellular Polymers May 11, 2023 B. Zaro, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Computational Chemist at Pfizer in the Boston Area
by Michael Keiser 03 May '23

03 May '23

fyi ---------- Forwarded message --------- From: Mathiowetz, Alan M <alan.m.mathiowetz(a)pfizer.com> Date: Sat, Apr 29, 2023 at 4:49 AM Subject: Computational Chemist at Pfizer in the Boston Area To: Michael Keiser <keiser(a)keiserlab.org> Hi, Mike- I wanted to let you know of a new job opening up in my group, in case any of your recent graduate students or postdocs is interested in such a position. The position is located in Cambridge, Massachusetts and involves direct applications in drug discovery – virtual screening, structure-based design, AI/ML, and many more. If anyone is interested in a position like that, please share the link with them: *External * https://pfizer.wd1.myworkdayjobs.com/PfizerCareers/job/United-States---Mass… All the best to you, Alan -- Michael J Keiser, PhD Associate Professor, UCSF p/1-415-886-7651 calendly.com/mjke

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[Compbio-allhands] 5/4/23 BBC Seminar with Xin Jin, PhD
by Flowers, Nicole 28 Apr '23

28 Apr '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Xin Jin, PhD Scripps In vivo Perturb-seq: scalable investigation of gene function and organ-wide action May 4, 2023 P. Grosjean, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/27/23 BBC Seminar with Derek Lowe, PhD
by Flowers, Nicole 21 Apr '23

21 Apr '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Derek Lowe, PhD Novartis Chemical Biology: How We Got Here (And Where We Might Be Going) April 27, 2023 M. Moore, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/20/23 BBC Seminar with Jin Zhang, PhD
by Flowers, Nicole 14 Apr '23

14 Apr '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Jin Zhang, PhD UCSD Illuminating the Biochemical Activity Architecture of the Cell April 20, 2023 X. Shu, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/13/23 BBC Seminar with John Teijaro, PhD
by Flowers, Nicole 10 Apr '23

10 Apr '23

Talk Title Change! BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO John Teijaro, PhD Scripps Myeloid reprogramming by JAK inhibition enhances checkpoint blockade therapy in mice and humans April 13, 2023 K. Shokat, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/13/23 BBC Seminar with John Teijaro, PhD
by Flowers, Nicole 07 Apr '23

07 Apr '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO John Teijaro, PhD Scripps Identifying novel modulators of interferon signaling/production using chemical and proteomic tools April 13, 2023 K. Shokat, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/6/23 BBC Seminar with Elizabeth Villa, PhD
by Flowers, Nicole 30 Mar '23

30 Mar '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Elizabeth Villa, PhD UCSD Opening Windows into the Cell: Bringing structure to cell biology using cryo-electron tomography April 6, 2023 D. Southworth & K. Verba, hosts Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Spring 2023 BBC Seminar Series Calendar
by Flowers, Nicole 27 Mar '23

27 Mar '23

Dear all, Attached, please find the calendar for the spring 2023 BBC Seminar Series. As always, I'll be sending outlook invites for each talk a week in advance. Thank you! Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Register for These Upcoming Data Science Training Program Courses
by Zainab Yusuf-Sada 20 Mar '23

20 Mar '23

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[Compbio-allhands] 3/23/23 BBC Seminar with Pei Zhou, PhD
by Flowers, Nicole 17 Mar '23

17 Mar '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Pei Zhou, PhD Duke University Novel Therapeutics Targeting Undruggable Protein Intervaces and Minor Coformational States March 23, 2023 J. Gross, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] No BBC Seminar Today!
by Flowers, Nicole 16 Mar '23

16 Mar '23

Dear all, There is no BBC Seminar today as the originally scheduled talk with Alison Ondrus was rescheduled for June 1. We'll resume next week with Dr. Pei Zhou of Duke University. Thank you, Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 3/9/23 BBC Seminar with John Chodera, PhD
by Flowers, Nicole 03 Mar '23

03 Mar '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> John Chodera, PhD Sloan-Kettering Cancer Center The COVID Moonshot and beyond: Antiviral drug discovery for global equitable and affordable access March 9, 2023 M. Smith, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 3/2/23 BBC Seminar with Jean-Laurent Casanova, PhD
by Flowers, Nicole 02 Mar '23

02 Mar '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller Cancer Center 160 Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Jean-Laurent Casanova, PhD Rockefeller University The human genetic and immunological determinants of life-threatening COVID-19 March 2, 2023 W. Shen, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fw: 2/23/23 BBC Seminar with Tingting Yang, PhD
by Madhani, Hiten 20 Feb '23

20 Feb '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Tingting Yang, PhD Columbia The structure and functio of bestrophins February 23, 2023 D. Minor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 2/23/23 BBC Seminar with Tingting Yang, PhD
by Flowers, Nicole 17 Feb '23

17 Feb '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Tingting Yang, PhD Columbia The structure and function of bestrophins February 23, 2023 D. Minor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fw: 2/23/23 BBC Seminar with Tingting Yang, PhD
by Madhani, Hiten 17 Feb '23

17 Feb '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Tingting Yang, PhD Columbia The structure and functio of bestrophins February 23, 2023 D. Minor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 2/23/23 BBC Seminar with Tingting Yang, PhD
by Flowers, Nicole 17 Feb '23

17 Feb '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Tingting Yang, PhD Columbia The structure and functio of bestrophins February 23, 2023 D. Minor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fw: 1/26/23 BBC Seminar with Suji Datta, PhD
by Madhani, Hiten 20 Jan '23

20 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller Cancer Center 160 Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Sujit Datta, PhD Princeton Life in a tight spot: How bacteria navigate crowded spaces January 26, 2023 S. Floor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 1/26/23 BBC Seminar with Suji Datta, PhD
by Flowers, Nicole 20 Jan '23

20 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller Cancer Center 160 Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Sujit Datta, PhD Princeton Life in a tight spot: How bacteria navigate crowded spaces January 26, 2023 S. Floor, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fw: 1/19/23 BBC Seminar with Saeed Hassanpour, PhD
by Madhani, Hiten 13 Jan '23

13 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Saeed Hassanpour, PhD Dartmouth College Deep Learning for Histopathological Characterization of Microscopy Images January 19, 2023 B. Miao, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 1/19/23 BBC Seminar with Saeed Hassanpour, PhD
by Flowers, Nicole 13 Jan '23

13 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Saeed Hassanpour, PhD Dartmouth College Deep Learning for Histopathological Characterization of Microscopy Images January 19, 2023 B. Miao, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fw: 1/12/23 BBC Seminar with Rebecca Voorhees, PhD
by Madhani, Hiten 06 Jan '23

06 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Rebecca Voorhees, PhD CalTech How membrane proteins get to a mitochondria January 12, 2023 A. Manglik, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 1/12/23 BBC Seminar with Rebecca Voorhees, PhD
by Flowers, Nicole 06 Jan '23

06 Jan '23

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Rebecca Voorhees, PhD CalTech How membrane proteins get to a mitochondria January 12, 2023 A. Manglik, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Winter 2023 BBC Seminar Series Poster
by Flowers, Nicole 27 Dec '22

27 Dec '22

Hi all, Attached, please find the schedule of winter quarter speakers for the BBC Seminar Series. Weekly announcements will be sent in the form of an Outlook Invitation, 6 days prior to the talk. Thank you, Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Register for These Upcoming Data Science Training Program Courses
by Zainab Yusuf-Sada 20 Dec '22

20 Dec '22

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[Compbio-allhands] 12/8/22 BBC Seminar with John Chodera Postponed
by Flowers, Nicole 30 Nov '22

30 Nov '22

The originally scheduled seminar on December 8, 2022 with John Chodera, PhD, of Sloan-Kettering has been postponed until February 16, 2023. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 12/1/22 BBC Seminar with Jin Zhang Postponed
by Flowers, Nicole 17 Nov '22

17 Nov '22

The originally scheduled seminar on December 1, 2022 with Jin Zhang, PhD, of UCSD has been postponed until April 20, 2023. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: Job Opportunities: Computational Chemist and Deep Learning Scientist
by Brian Shoichet 15 Nov '22

15 Nov '22

FYI ---------- Forwarded message --------- From: David Baker <dabaker(a)uw.edu> Date: Mon, Nov 14, 2022 at 10:39 PM Subject: Fwd: Job Opportunities: Computational Chemist and Deep Learning Scientist To: Brian Shoichet <shoichet(a)cgl.ucsf.edu>, <john.chodera(a)choderalab.org> Hi Brian and John, I hope you are doing well! Please pass these job postings on to anybody in your groups who might be interested. Patrick and Adam are great so I think it could be a lot of fun and hopefully impactful. Best regards, David Begin forwarded message: *From: *Adam Moyer <adam(a)vilyatx.com> *Subject: **Job Opportunities: Computational Chemist and Deep Learning Scientist* *Date: *November 14, 2022 at 11:37:09 AM PST *To: *David Baker <dabaker(a)uw.edu>, Patrick Salveson <patrick(a)vilyatx.com>, Gaurav Bhardwaj <gauravb(a)uw.edu>, Nao Hiranuma <nao(a)vilyatx.com> Hi all, I am excited to share two computational scientist positions at Vilya, a platform-based computational design macrocycle therapeutics company based in Seattle WA. It was founded from the structure-based molecular design developments in David Baker’s lab at the University of Washington. See a recent publication by one of our co-founders: https://www.cell.com/cell/pdf/S0092-8674(22)00922-9.pdf [cell.com] <https://urldefense.com/v3/__https://www.cell.com/cell/pdf/S0092-8674(22)009…> Structure-based computational molecular design is a core tenet of Vilya. If you love thinking about the energetics of non-covalent interactions, conformational entropy, and writing innovative code to design therapeutics, join the team! Job descriptions are attached. Please feel free to reach out to me at adam(a)vilyatx.com if you are interested. Thanks, Adam -- Adam Moyer, Ph.D. (he/him/his) vilyatx.com [vilyatx.com] <https://urldefense.com/v3/__https://vilyatx.com/__;!!K-Hz7m0Vt54!j5OoX_Ds0Y…> -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 11/17/22 BBC Seminar with Peijun Zhang, PhD
by Flowers, Nicole 10 Nov '22

10 Nov '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> HARC Speaker Peijun Zhang, Ph.D. University of Oxford Visualizing virus infection in cells by cryoEM November 17, 2022 C. Craik, Host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 11/17/22 BBC Seminar with Mohammed AlQuraishi, PhD
by Flowers, Nicole 10 Nov '22

10 Nov '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> HARC Speaker Peijun Zhang, Ph.D. University of Oxford Visualizing virus infection in cells by cryoEM November 17, 2022 C. Craik, Host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Register for Advanced Cytoscape Automation
by Zainab Yusuf-Sada 07 Nov '22

07 Nov '22

Data Science Training Program Advanced Cytoscape Automation Alex Pico November 15, 2022 1–4pm Online Learn how Cytoscape can be integrated into programmatic workflows and pipelines using R or Python. LEARN MORE AND REGISTER <https://gladstone.org/events/advanced-cytoscape-automation-1> Cordially, *Zainab Yusuf Sada, *(she/her/hers) Executive Administrator Director's Office of Data Science & Biotechnology *Gladstone Institutes* *Science Overcoming Disease*gladstone.org <http://www.gladstoneinstitutes.org/> Follow us on Twitter <https://twitter.com/GladstoneInst> Like us on Facebook <https://www.facebook.com/gladstoneinstitutes/>

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[Compbio-allhands] 11/10/22 NO BBC SEMINAR
by Flowers, Nicole 04 Nov '22

04 Nov '22

There is no BBC Seminar next week, Thursday, November 10. We will resume the following week on November 17. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 11/3/22 BBC Seminar with Mohammed AlQuraishi, PhD
by Flowers, Nicole 28 Oct '22

28 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Mohammed AlQuraishi, PhD Columbia OpenFold: Lessons learned and insights gained from rebuilding AlphaFold2 November 3, 2022 B. Orr, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/27/22 BBC Seminar with Greg Bowman, PhD
by Flowers, Nicole 21 Oct '22

21 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Greg Bowman, PhD University of Pennsylvania Protein dynamics and energy landscape design October 27, 2022 M. Jacobson, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/20/22 Clements Lecture with Daniel Asarnow, PhD
by Flowers, Nicole 17 Oct '22

17 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Biophysics Alumnus Daniel Asarnow, PhD Clements Lecture Membrane unanchored - how Dispatched releases lipid-modified Hedgehog in animal development October 20, 2022 Y. Chang, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Calendar available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series

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[Compbio-allhands] Fwd: Structural Bioinformatics position at Interline
by Andrej Sali 15 Oct '22

15 Oct '22

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[Compbio-allhands] Fwd: hi! and teaching opportunity
by Grabe, Michael 09 Oct '22

09 Oct '22

Teaching opportunity for mathy types. Michael Grabe Professor University of California, San Francisco Cardiovascular Research Institute Department of Pharmaceutical Chemistry 555 Mission Bay Blvd South, Room 452T<x-apple-data-detectors://4/1>, MC 3122 San Francisco, California 94143<x-apple-data-detectors://5/0> 415-502-2874<tel:415-502-2874> (office) 415-476-8173<tel:415-476-8173> (fax) Begin forwarded message: From: Hana Mori <hana.mori(a)usfca.edu> Date: October 8, 2022 at 3:16:43 PM PDT To: "Grabe, Michael" <Michael.Grabe(a)ucsf.edu> Subject: hi! and teaching opportunity Michael, I hope you are doing well! It's been some time. We have a teaching opportunity coming up in Fall 2023, for a colleague who will be on sabbatical. It's essentially a differential equations course with engineering applications, ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization. ZjQcmQRYFpfptBannerEnd Michael, I hope you are doing well! It's been some time. We have a teaching opportunity coming up in Fall 2023, for a colleague who will be on sabbatical. It's essentially a differential equations course with engineering applications, plus a computational lab component with Python. I'm attaching a brief course description. Do you happen to have any grad students, post-docs etc who might be interested? Please let me know! Thanks so much. Hana

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[Compbio-allhands] 10/13/22 BBC Seminar with Samara Reck-Peterson, PhD
by Flowers, Nicole 07 Oct '22

07 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Samara Reck-Peterson, PhD UCSD My squid teacher: RNA recoding of the intracellular transport machinery October 13, 2022 S. Dumont, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] 10/13/22 BBC Seminar with Sergey Ovchinnikov, PhD
by Flowers, Nicole 07 Oct '22

07 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Samara Reck-Peterson, PhD UCSD My squid teacher: RNA recoding of the intracellular transport machinery October 13, 2022 S. Dumont, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] Fwd: Computational Chemist Opening @ Photys Therapeutics
by Brian Shoichet 06 Oct '22

06 Oct '22

FYI ---------- Forwarded message --------- From: AJ Campbell <acampbell(a)photys.com> Date: Thu, Oct 6, 2022 at 12:27 PM Subject: Computational Chemist Opening @ Photys Therapeutics To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Cc: Alyssa Ozimek-Maier <aozimek(a)photys.com> Hi Dr. Shoichet, I hope you are doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join our CADD group at Photys Therapeutics and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance therapeutic projects within Photys through structure-based and ligand-based modeling approaches. Please take a look at this exciting opportunity below. Here is a link to the job description: https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723-a361-3fb7c0c78839 Here is a link to Photys Therapeutics homepage: https://www.photys.com Please feel free to pass this email along to any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our Head of Recruiting, Alyssa Ozimek-Maier, to fill in the details – she can be reached at aozimek-Maier(a)photys.com Let me know if you have any questions and many thanks! Best, AJ _____________________________________________________ *Arthur J Campbell, Ph.D. * *Senior Director, CADD* acampbell(a)photys.com <acampbell(a)photystx.com> Tel 631-767-8922 [image: signature_3585878821] -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Computational Chemist Opening @ Photys Therapeutics
by Andrej Sali 06 Oct '22

06 Oct '22

Begin forwarded message: > > From: AJ Campbell <acampbell(a)photys.com> > Subject: Computational Chemist Opening @ Photys Therapeutics > Date: October 6, 2022 at 12:32:26 PM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > Cc: Alyssa Ozimek-Maier <aozimek(a)photys.com> > > This Message Is From an Untrusted Sender > You have not previously corresponded with this sender. > Hi Dr. Sali, > > I hope you are doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join our CADD group at Photys Therapeutics and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance therapeutic projects within Photys through structure-based and ligand-based modeling approaches. Please take a look at this exciting opportunity below. > > Here is a link to the job description: > https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723-a361-3fb7c0c78839 <https://urldefense.com/v3/__https://jobs.lever.co/Photys/ceeb9ef3-72f4-4723…> > > Here is a link to Photys Therapeutics homepage: > https://www.photys.com <https://urldefense.com/v3/__https://www.photys.com__;!!LQC6Cpwp!qRVZXErKYFw…> > > Please feel free to pass this email along to any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our Head of Recruiting, Alyssa Ozimek-Maier, to fill in the details – she can be reached at aozimek-Maier(a)photys.com <mailto:aozimek-Maier@photys.com> > > Let me know if you have any questions and many thanks! > > > Best, > AJ > > > > > _____________________________________________________ > > Arthur J Campbell, Ph.D. > Senior Director, CADD > acampbell(a)photys.com <mailto:acampbell@photystx.com> > Tel 631-767-8922 >

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[Compbio-allhands] Register for Upcoming Bioinformatic Workshops
by Zainab Yusufsada 03 Oct '22

03 Oct '22

Linear Mixed Effects Modeling Reuben Thomas October 13, 2022 1–4pm Online Join to learn about linear mixed effects modeling. Discover the motivation for the use of these models, the underlying description and assumptions behind them, example scenarios where they can be used, and the code to implement and interpret these models in R. LEARN MORE AND REGISTER <https://gladstone.org/events/linear-mixed-effects-modeling> Advanced Cytoscape Automation Alex Pico November 15, 2022 1–4pm Online Learn how Cytoscape can be integrated into programmatic workflows and pipelines using R or Python. LEARN MORE AND REGISTER <https://gladstone.zoom.us/meeting/register/tJApce6rpzgrG9LdgAughqt3XwhJp2dF…> Cordially, *Zainab Yusuf Sada* | Executive Administrator Gladstone Institute of Data Science & Biotechnology 1650 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] 10/6/22 BBC Seminar with Sergey Ovchinnikov, PhD
by Flowers, Nicole 30 Sep '22

30 Sep '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Sergey Ovchinnikov, PhD Harvard Inverting protein structure prediction models to solve problems in biology October 6, 2022 B. Orr, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] Register for an Introductory Machine Learning for Biologists Workshop
by Zainab Yusufsada 28 Sep '22

28 Sep '22

Machine learning workshop on October 4, 2022. <https://gladstone.org?utm_source=Gladstone%27s+Internal+Community&utm_campa…> <https://twitter.com/GladstoneInst?utm_source=Gladstone%27s+Internal+Communi…> <https://www.facebook.com/gladstoneinstitutes?utm_source=Gladstone%27s+Inter…> <https://www.instagram.com/gladstoneinstitutes?utm_source=Gladstone%27s+Inte…> <https://www.youtube.com/user/GladstoneScience?utm_source=Gladstone%27s+Inte…> <https://www.linkedin.com/company/gladstoneinstitutes/?utm_source=Gladstone%…> View in Your Browser <https://us10.campaign-archive.com/?e=__test_email__&u=1a62a392ffda799ebdf03…> DATA SCIENCE TRAINING PROGRAM *Introductory Machine Learning for Biologists* October 4, 2022 10am–12pm • Online Join Min-Gyoung Shin from the Bioinformatics Core to learn how you can apply machine learning to answer biological questions. LEARN MORE AND REGISTER <https://gladstone.org/events/introductory-machine-learning-biologists-3> View in Your Browser <https://us10.campaign-archive.com/?e=__test_email__&u=1a62a392ffda799ebdf03…> © 2022 Gladstone Institutes. All rights reserved. Want to change how you receive these emails? Update your preferences <https://gladstoneinstitutes.us10.list-manage.com/profile?u=1a62a392ffda799e…> or unsubscribe from this list. <https://gladstoneinstitutes.us10.list-manage.com/unsubscribe?u=1a62a392ffda…> Gladstone Institutes 1650 Owens Street San Francisco, CA 94158 Add us to your address book <https://gladstoneinstitutes.us10.list-manage.com/vcard?u=1a62a392ffda799ebd…>

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[Compbio-allhands] 9/29/22 BBC Seminar with James Ferrell, MD, PhD, HD 160
by Flowers, Nicole 22 Sep '22

22 Sep '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller Cancer Center 160 Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Co-sponsored by the [cid:1174b620-9656-4b5a-9381-e7e0fef28c10] James Ferrell, MD, PhD Stanford University Cytoplasmic self-organization and dynamics September 29, 2022 L. Weinberger, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Computational Scientist Job Listing at UChicago Research Computing Center
by Andrej Sali 21 Sep '22

21 Sep '22

> Begin forwarded message: > > From: "Gregory A. Voth" <gavoth(a)uchicago.edu> > Subject: Computational Scientist Job Listing at UChicago Research Computing Center > Date: September 21, 2022 at 1:06:25 PM PDT > To: "Gregory A. Voth" <gavoth(a)uchicago.edu> > > This Message Is From an External Sender > This message came from outside your organization. > Dear Colleagues, > > Please pass this add on to any interested parties in your research group. > > https://uchicago.wd5.myworkdayjobs.com/en-US/External/job/Computational-Sci… <https://urldefense.com/v3/__https://uchicago.wd5.myworkdayjobs.com/en-US/Ex…> > > The best focus of an applicant for this job is theoretical/computational chemistry or related areas with strong programming skills. > > Best wishes, > Greg Voth > > __________________________________________________________________ > > Gregory A. Voth, Ph.D., FRSC > Haig P. Papazian Distinguished Service Professor, > Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics > Founding Director, Chicago Center for Theoretical Chemistry (CCTCh) > > Department of Chemistry > The University of Chicago > 5735 S. Ellis Avenue > Chicago, Illinois 60637 > Phone: 773-702-9092 > Fax: 773-795-9106 > Administrative Assistant: 773-702-9096 > Email: gavoth(a)uchicago.edu <mailto:gavoth@uchicago.edu> > Group Web Site: vothgroup.uchicago.edu <https://urldefense.com/v3/__http://vothgroup.uchicago.edu/__;!!LQC6Cpwp!rkn…> > CCTCh Web Site: https://cctch.uchicago.edu/ <https://urldefense.com/v3/__https://cctch.uchicago.edu/__;!!LQC6Cpwp!rknnBB…> > ___________________________________________________________________

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[Compbio-allhands] Register for Introduction to Pathway Analysis
by Zainab Yusufsada 20 Sep '22

20 Sep '22

<https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> View in Your Browser <https://mailchi.mp/gladstone/data-analysis-with-r-for-absolute-beginners-63…> DATA SCIENCE TRAINING PROGRAM *Introduction toPathway Analysisand Visualization* September 23, 2022 1–4pm • Online Join to learn about functional enrichment pathway analysis and how to visualize your data in pathways. Learn how to go from a list of genes to effective data visualizations. LEARN MORE AND REGISTER <https://gladstone.org/events/introduction-pathway-analysis-and-visualizatio…> *Zainab Yusuf Sada* | Executive Administrator Gladstone Institute of Data Science & Biotechnology 1650 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] Canceled: 9/22/22 BBC Seminar with Greg Bowman, PhD
by Flowers, Nicole 19 Sep '22

19 Sep '22

This seminar has been cancelled due to unforeseen circumstances. Please be on the lookout for a rescheduled date.

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[Compbio-allhands] 9/22/22 BBC Seminar with Greg Bowman, PhD
by Flowers, Nicole 16 Sep '22

16 Sep '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL Greg Bowman, PhD University of Pennsylvania Protein dynamics and energy landscape design September 22, 2022 M. Jacobson, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: NIGMS Recruiting Program Officer in Bioinformatics and Computational Biology
by Tom Ferrin 14 Sep '22

14 Sep '22

Job opportunity at NIH... -------- Forwarded Message -------- Subject: NIGMS Recruiting Program Officer in Bioinformatics and Computational Biology Date: Fri, 2 Sep 2022 11:55:46 +0000 From: Nguyen, Han (NIH/NIGMS) [E] <han.nguyen(a)nih.gov> To: Nguyen, Han (NIH/NIGMS) [E] <han.nguyen(a)nih.gov> CC: Yuan, Jean (NIH/NIGMS) [E] <jean.yuan(a)nih.gov> Dear NIH applicants/grantees, Our Branch in Bioinformatics and Computational Biology at NIGMS/NIH has an opening for a Program Officer position. I’d like to ask you for a favor of forwarding the message below to any relevant PIs and societies so we can reach a broad audience for this opening. Thanks a lot for spreading the words! Best regards, Han Han Nguyen, PhD, Program Director Division of Biophysics, Biomedical Technology, and Computational Biosciences National Institute of General Medical Sciences, NIH Subject: NIGMS Recruiting Program Officer in Bioinformatics and Computational Biology Greetings, We are looking to hire a Program Officer <https://www.nigms.nih.gov/about/job_vacancies/Pages/bbcb-program-director-s…> with experience in bioinformatics, computational biology, and/or biostatistics to join our Bioinformatics and Computational Biology <https://www.nigms.nih.gov/about/overview/BBCB/Biophysics/Pages/biophysics.a…>(BCB)**Branch of the Division of Biophysics, Biomedical Technology, and Computational Biosciences (BBCB) <https://www.nigms.nih.gov/about/overview/Pages/BBCB.aspx> at NIGMS. The successful candidate will be responsible for scientific and administrative management of grants portfolio in development and integration of computing, data modeling, statistics, and mathematics approaches into biomedical sciences. Applicants should have broad expertise in one or more of the following areas: computational biology, bioinformatics, applied mathematics or data science in biomedical sciences, biostatistics, and biophysics. Candidates must be *U.S. citizens* and should have a Ph.D., M.D., or equivalent degree in one of the sciences underlying these research areas. Familiarity with NIH extramural funding as an applicant, reviewer, or NIH scientific administrator is a plus, and outstanding written and oral communication skills are essential. Interested candidates are encouraged to read this Program Officer <https://www.nigms.nih.gov/about/job_vacancies/Pages/bbcb-program-director-s…>**post,send an email of interest that describes your specific interests in BCB-managed programs to Jean Yuan <mailto:xin.yuan@nih.gov> (jean.yuan(a)nih.gov)and Dorothy Beckett <mailto:dorothy.beckett@nih.gov> (dorothy.beckett(a)nih.gov) Prepare to apply to the upcoming NIH Global Recruitment <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fhr.nih.go…> announcement for Health Scientist Administrators (HSA) position through *USAjobs.gov* <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.usajo…>, which will only be open between *September 21 *through*September 30, 2022*. There will be two GS-12/13/14 HSA (Program Officer) vacancy announcements: One for current federal employees and one for the public. *Please help us to spread the news.* ** *The NIH encourages the application and nomination of qualified women, minorities, and individuals with disabilities. HHS and NIH are Equal Opportunity Employers.* *_More Information?_* Submit your application starting *September 21* through*September 30, 2022 */-->/ *Global Recruitment: Recruiting for all of NIH:* https://hr.nih.gov/jobs/global-recruitment <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fhr.nih.go…>/./ *NIGMS /“Tip Sheet”/* https://www.nigms.nih.gov/about/job_vacancies/Documents/Global-Recruitment-… <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.nigms…> *Applying for Scientific Administration Jobs at NIGMS* https://loop.nigms.nih.gov/2013/04/applying-for-scientific-administration-j… <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Floop.nigm…> Best Regards, Jean Yuan, PhD Chief, Bioinformatics and Computational Biology Branch Division of Biophysics, Biomedical Technology, and Computational Biosciences National Institute of General Medical Sciences (NIGMS), National Institutes of Health Email: Jean.Yuan(a)nih.gov

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[Compbio-allhands] faculty position at Univ of Michinga, Ann Arbor
by Andrej Sali 08 Sep '22

08 Sep '22

Med Chem department at Univ of Michigan, Ann Arbor, an open search this year for someone focused on computational chemistry: https://apply.interfolio.com/107765 <https://urldefense.com/v3/__https://apply.interfolio.com/107765__;!!LQC6Cpw…>. -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Open positions in the Lab, please distribute. Thanks!
by Andrej Sali 31 Aug '22

31 Aug '22

> Begin forwarded message: > > From: "Marc A. Marti-Renom" <martirenom(a)cnag.crg.eu> > Subject: Open positions in the Lab, please distribute. Thanks! > Date: August 31, 2022 at 2:35:55 AM PDT > To: "Marc A. Marti-Renom" <martirenom(a)cnag.crg.eu> > > This Message Is From an External Sender > This message came from outside your organization. > Dear friends and colleagues, > > Apologies for the mass posting. I hope you could please advertise these positions we have open in the lab. > > Keywords —> 3DGenomics; 4DNucleomics; Imaging; 3D'Omics > > Postdoc1 👉🏻 https://tinyurl.com/marciuspd1 <https://urldefense.com/v3/__https://tinyurl.com/marciuspd1__;!!LQC6Cpwp!o9a…> > Postdoc2 👉🏻 https://tinyurl.com/marciuspd2 <https://urldefense.com/v3/__https://tinyurl.com/marciuspd2__;!!LQC6Cpwp!o9a…> > SpeTech 👉🏻 https://tinyurl.com/marciusst <https://urldefense.com/v3/__https://tinyurl.com/marciusst__;!!LQC6Cpwp!o9a2…> > > Thanks in advance! > Marc > ... > Marc A. Marti-Renom, ICREA Research Professor > Structural Genomics Group Leader > Centre Nacional d’Anàlisi Genòmica - Centre de Regulació Genòmica (CNAG-CRG) > The Barcelona Institute of Science and Technology (BIST) > Parc Científic de Barcelona – Torre I (10th floor) > Baldiri Reixac, 4, 08028 Barcelona > Tel +34 9340 33743 > Email: martirenom(a)cnag.crg.eu <mailto:martirenom@cnag.crg.eu> · martirenom(a)gmail.com <mailto:martirenom@gmail.com> > Web: http://marciuslab.org <https://urldefense.com/v3/__http://marciuslab.org__;!!LQC6Cpwp!o9a2QydrEda0…> · http://cnag.crg.eu <https://urldefense.com/v3/__http://cnag.crg.eu__;!!LQC6Cpwp!o9a2QydrEda0TG6…> · http://crg.cat <https://urldefense.com/v3/__http://crg.cat__;!!LQC6Cpwp!o9a2QydrEda0TG6rd4f…> > > *** Consider the environment. Print responsibly. ***

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[Compbio-allhands] Fwd: UMass Chan Tenured / Tenure-Track Faculty Search Biochemistry and Molecular Biotechnology
by Andrej Sali 23 Aug '22

23 Aug '22

Sent from my iPhone Begin forwarded message: > From: "Schiffer, Celia" <Celia.Schiffer(a)umassmed.edu> > Date: August 23, 2022 at 5:38:52 AM PDT > To: kornberg(a)stanford.edu, koshland(a)berkeley.edu, t.kouzarides(a)gurdon.cam.ac.uk, mkre(a)uchicago.edu, rek(a)stowers.org, pkkuhl(a)uw.edu, monika.hobrack(a)biophys.mpg.de, kunkel(a)enders.tch.harvard.edu, kuriyan(a)berkeley.edu, mkuroda(a)genetics.med.harvard.edu, a.i.lamond(a)dundee.ac.uk, lander(a)broadinstitute.org, eas2125(a)columbia.edu, lanzavecchia(a)irb.usi.ch, laub(a)mit.ed, ledoux(a)cns.nyu.edu, ruth.lehmann(a)med.nyu.edu, msl2(a)princeton.edu, ol235(a)cam.ac.uk, slinn(a)berkeley.edu, lipman(a)ncbi.nlm.nih.gov, dan.littman(a)med.nyu.edu, lodish(a)wi.mit.edu, srl(a)stanford.edu, loogerl(a)janelia.hhmi.org, losick(a)mcb.harvard.edu, andrew.lumsden(a)kcl.ac.uk, lluo(a)stanford.edu, hitenmadhani(a)gmail.com, hsmalik(a)fhcrc.org, tm2472(a)columbia.edu, jlm2(a)columbia.edu, dan(a)bigbird.uchicago.edu, bmargoli(a)umich.edu, arm42(a)columbia.edu, marletta(a)berkeley.edu, marrackp(a)njhealth.org, gail.r.martin(a)ucsf.edu, john.mascola(a)nih.gov, j-massague(a)ski.mskcc.org, dm(a)hms.harvard.edu, dbsmpt(a)nus.edu.sg, dg-office(a)embl.org, maunsell(a)uchicago.edu, jmccammon(a)ucsd.edu, suemcc(a)stanford.edu, Steven.McKnight(a)utsouthwestern.edu, amcmahon(a)med.usc.edu, andrew.mcmichael(a)ndm.ox.ac.uk, caroline.mcmillen(a)newcastle.edu.au, bruce.mcnaughton(a)uleth.ca, ruslan.medzhitov(a)yale.edu, melloc(a)ohsu.edu, jane.mellor(a)bioch.ox.ac.uk, dmelton(a)harvard.edu, bjmeyer(a)berkeley.edu, meyerow(a)caltech.edu, milinski(a)evolbio.mpg.de, timothy_mitchison(a)hms.harvard.edu, kmizu(a)helix.nih.gov, sm(a)bio.dtu.dk, guy(a)cabm.rutgers.edu, hmooney(a)stanford.edu, vamsi(a)hms.harvard.edu, david.morgan(a)ucsf.edu, r.g.m.morris(a)ed.ac.uk, morrison@utsouthwestern, milan.mrksich(a)northwestern.edu, "Tom W. Muir - PRINCETON" <muir(a)princeton.edu>, mueller(a)embl-grenoble.fr, murdoch(a)lifesci.ucsb.edu, kmurphy(a)wustl.edu, awm(a)mcb.harvard.edu, mnachman(a)berkeley.edu, lee_nadler(a)dfci.harvard.edu, kim.nasmyth(a)trinity.ox.ac.uk, egneilson(a)northwestern.edu, wjnelson(a)stanford.edu, eric.nestler(a)mssm.edu, bill(a)www-v6.stanford.edu, rasmus_nielsen(a)berkeley.edu, twn(a)cwru.edu, christer.nilsson(a)umu.se, denis.noble(a)dpag.ox.ac.uk, enogales(a)lbl.gov, harry(a)nuvolari.ucsc.edu, rnusse(a)stanford.edu, so104(a)medschl.cam.ac.uk, maileric.olson(a)utsouthwestern.edu, stuart_orkin(a)dfci.harvard.edu, mosley(a)salud.unm.edu, pacala(a)princeton.edu, Miles.Padgett(a)glasgow.ac.uk, page_admin(a)wi.mit.edu, peter.palese(a)mssm.edu, mpalmer(a)umd.edu, spalumbi(a)stanford.edu, liam(a)stat.colubia.edu, Paradal(a)mskcc.org, renato.paro(a)bsse.ethz.ch, Ardem Patapoutian <ardem(a)scripps.edu>, nipam(a)berkeley.edu, perrimon(a)genetics.med.harvard.edu, wap3g(a)virginia.edu, phillips(a)pboc.caltech.edu, william.phillips(a)nist.gov, georgep(a)rice.edu, pietro.decamilli(a)yale.edu, martin.plenio(a)uni-ulm.de, ploegh(a)wi.mit.edu, mpoo(a)berkeley.edu, jpriess(a)fredhutch.org, mp3284(a)columbia.edu, S.E.Radford(a)leeds.ac.uk, hraff(a)mcw.edu, m.raff(a)ucl.ac.uk, klaus.rajewsky(a)mdc-berlin.de, "V. Ramakrishnan" <ramak(a)mrc-lmb.cam.ac.uk>, yrao(a)pku.edu.cn, tom_rapoport(a)hms.harvard.edu, raulet(a)berkeley.edu, aregev(a)broad.mit.edu, Danny.Reinberg(a)nyumc.org, richmond(a)mol.biol.ethz.ch, mrief(a)ph.tum.de, christopher.robinson(a)imp.ac.at, generobi(a)life.illinois.edu, rolston(a)umd.edu, rosbash(a)brandeis.edu, michael.rosen(a)utsouthwestern.edu, mrosenfeld(a)ucsd.edu, janet.rossant(a)sickkids.ca, mr(a)purdue.edu, Davide.Ruggero(a)ucsf.edu, sabatini(a)wi.mit.edu, sali(a)salilab.org, asaltiel(a)ucsd.edu, vahid.sandoghdar(a)mpl.mpg.de, eff.sands(a)emory.edu, sanesj(a)mcb.harvard.edu, philippe.sansonetti(a)pasteur.fr, jhwinsto(a)utmb.edu, bobsauer(a)mit.edu, david_scadden(a)harvard.edu, cshatz(a)stanford.edu, schekman(a)berkeley.edu, philipp.scherer(a)utsouthwestern.edu, schier(a)fas.harvard.edu, schmiedmayer(a)atomchip.org, Agnes.Schonbrunn(a)uth.tmc.edu, erin.schuman(a)brain.mpg.de, sedat(a)msg.ucsf.edu, ned.seeman(a)nyu.edu, cseidman(a)genetics.med.harvard.edu, seyfarth(a)psych.upenn.edu, shair(a)chemistry.harvard.edu, shapiro(a)stanford.edu, sharppa(a)mit.edu, cshatz(a)stanford.edu, mls7(a)columbia.edu, tshenk(a)princeton.edu, ASHER(a)niaid.nih.gov, charles.sherr(a)stjude.org, tobert.sherwin(a)yale.edu, yshi(a)hms.harvard.edu, kevan.shokat(a)ucsf.edu, gerald.shulman(a)yale.edu, sas8(a)cumc.columbia.edu, curt-sigmund(a)uiowa.edu, yaron.silberberg(a)weizmann.ac.il, tsilhavy(a)princeton.edu, rsilverstein(a)mcw.edu, James_Simmons(a)brown.edu, simpson(a)kdna.ucla.edu, david_sinclair(a)hms.harvard.edu, susan.smyth(a)uky.edu, ssnyder(a)jhmi.edu, ralf.sommer(a)tuebingen.mpg.de, peter_sorger(a)hms.harvard.edu, bruce_spiegelman(a)dfci.harvard.edu, jspudich(a)stanford.edu, d.st.johnston(a)gen.cam.ac.uk, dastahl(a)uw.edu, stask(a)berkeley.edu, ljoan.steitz(a)yale.edu, thomas.steitz(a)yale.edu, pws(a)caltech.edu, stillman(a)cshl.edu, mstitt(a)mpimp-golm.mpg.de, stock(a)cabm.rutgers.edu, stroud(a)msg.ucsf.edu, gs20(a)cumc.columbia.edu, stubbe(a)mit.edu, wes(a)biochem.utah.edu, sved(a)pitt.edu, szostak(a)molbio.mgh.harvard.edu, tabin(a)genetics.med.harvard.edu, takahashi(a)utsouthwestern.edu, tallal(a)andromeda.rutgers.edu, dwtank(a)princeton.edu, staylor(a)ucsd.edu, smt(a)princeton.edu, tilman(a)umn.edu, gasper.tkacik(a)ist.ac.at, tonegawa(a)mit.edu, Peter_Tonellato(a)hms.harvard.edu, etopol(a)scripps.edu, jt233(a)cam.ac.uk, tsaiasst(a)mit.edu, richard.tsien(a)nyulangone.org, rtsien(a)ucsd.edu, unanue(a)wustl.edu, ungerlel(a)mail.nih.gov, ron.vale(a)ucsf.edu, jsv(a)chem.ucla.edu, rvance(a)berkeley.edu, edward.vates(a)urmc.rochester.edu, vaux(a)wehi.edu.au, slv8(a)cornell.edu, iverma(a)ucsd.edu, virgin(a)wustl.edu, vogelbe(a)welch.jhu.edu, ewagner(a)cnio.es, slwagner(a)ucsd.edu, gunter.wagner(a)yale.edu, edward.wakeland(a)utsouthwestern.edu, gwalker(a)mit.edu, christopher.walsh(a)childrens.harvard, peter(a)walterlab.ucsf.edu, jywang(a)ucsd.edu, mwang(a)master-7rqtwti-mm3lcf5ygjhvq.us-4.platformsh.site, graham.warren(a)mfpl.ac.at, Robert Weinberg <weinberg(a)wi.mit.edu>, bill.weis(a)stanford.edu, aweiss(a)medicine.ucsf.edu, jonathan.weissman(a)ucsf.edu, irv(a)stanford.edu, welch(a)berkeley.edu, jim.wells(a)ucsf.edu, wherry(a)pennmedicine.upenn.edu, wickens(a)biochem.wisc.edu, linda.wicker(a)cimr.cam.ac.uk, daylite(a)pitt.edu, m.wild(a)auckland.ac.nz, jcwingfield(a)ucdavis.edu, owenwitte(a)mednet.ucla.edu, cwolberg(a)jhmi.edu, pwolynes(a)rice.edu, jlw(a)stowers.org, wuc(a)janelia.hhmi.org, g.j.l.wuite(a)vu.nl, sunneyxie(a)pku.edu.cn, weiy(a)mail.nih.gov, young(a)wi.mit.edu, zhangf(a)mit.edu, yzhang(a)genetics.med.harvard.edu, zhuang(a)chemistry.harvard.edu, lzipursky(a)mednet.ucla.edu, hzoghbi(a)bcm.edu, zon(a)enders.tch.harvard.edu, cz2195(a)columbia.edu > Cc: "Rhind, Nick" <Nick.Rhind(a)umassmed.edu> > Subject: UMass Chan Tenured / Tenure-Track Faculty Search Biochemistry and Molecular Biotechnology > > > This Message Is From an External Sender > This message came from outside your organization. > Dear Colleagues, > > The Department of Biochemistry & Molecular Biotechnology at the University of Massachusetts Chan Medical School seeks applicants for a tenured or tenure track faculty position. Our faculty is committed to tackling significant biological questions at a molecular level, with research programs spanning a broad range of topics. In this new period of growth, we are recruiting faculty members working to elucidate important biological mechanisms, placing special emphasis on integrative methods and research using the physical sciences (physics, chemistry, math and engineering) to solve fundamental molecular problems in biology. We are an interactive group who encourages research at the interface of multiple disciplines, the development of enabling technologies, and team science. More information about the department can be found on our website <www.umassmed.edu/bmb>. > > We are searching for a highly motivated and enthusiastic individual, committed to diversity, creativity, and collaboration, to join our team of actively engaged faculty. The successful candidate will develop and lead an internationally-recognized extramurally-funded research program, contribute to our missions of education, inclusion and service, and play an active role in the Department as we expand in a new phase of growth. Qualified applicants will have earned a Ph.D. in a life or physical science discipline and have a demonstrated track record of outstanding accomplishment. Applicants of all academic ranks with a strong commitment to enhancing diversity and inclusivity are encouraged to apply. > > We are especially eager to consider applicants who will support and elevate the UMass Chan commitment to diversity, equity and inclusion, and foster an environment of inclusive collaborative excellence where all faculty can thrive. As an equal opportunity and affirmative action employer, UMass recognizes the power of a diverse community and encourages applications from individuals with varied experiences, perspectives, and backgrounds. > > The Department is housed on two floors of a modern, well-equipped, 340,000 sq ft research building on a rapidly expanding Medical School campus. Core facilities within our department include world class cryo-electron microscopy, X-ray crystallography, NMR spectroscopy, small molecule screening, structure-based drug design and mass spectrometry. Additional core facilities, including proteomics, genotyping, fluorescence-activated cell sorting, microscopy/imaging, deep sequencing, genomics/bioinformatics, transgenic/knockout mice, and metabolic phenotyping, are available. More information about core facilities on campus may be found online <www.umassmed.edu/research/cores>. > > More information can be found at https://jobs.sciencecareers.org/job/612069. > And applications are accepted at https://academicjobsonline.org/ajo/jobs/22273. Applications will be accepted until November 1, 2022. Evaluation of applications will begin as soon as they are received. > > Thanks very much > > Nick Rhind > Chair of the Faculty Search Committee, > Nick Rhind, Ph.D. > Professor Biochemistry and Molecular Biotechnology > nick.rhind(a)umassmed.edu > > and > > > Celia Schiffer, Ph.D. > Professor and Chair > Department of Biochemistry and Molecular Biotechnology > Director Institute of Drug Resistance > University of Massachusetts Chan Medical School > Celia.Schiffer(a)umassmed.edu > > Karen.Welch(a)umassmed.edu > Executive Assistant >

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[Compbio-allhands] 2022 Fall BBC Seminar Series Calendar
by Flowers, Nicole 22 Aug '22

22 Aug '22

Dear all, Attached, please find the calendar of scheduled speakers for this fall’s BBC Seminar Series. You can also view the full calendar here: https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series Weekly outlook invites will be sent, but you can also subscribe to the calendar using these links: Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> Thank you, Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: SCB GL in Structural or Molecular Systems Biology
by Andrej Sali 09 Aug '22

09 Aug '22

> Begin forwarded message: > > From: Christoph Mueller <christoph.mueller(a)embl.de> > Subject: SCB GL in Structural or Molecular Systems Biology > Date: August 9, 2022 at 7:04:22 AM PDT > To: sali(a)salilab.org > > This Message Is From an External Sender > This message came from outside your organization. > Dear Andrej, > > The Structural and Computational Biology Unit at EMBL in Heidelberg is looking to recruit a highly motivated group leader in the area of structural or molecular systems biology to address fundamental questions in life sciences. We are looking to attract candidates that pursue experimental or computational approaches, which can contribute to or interface with integrated structural biology. Research areas are diverse, including chemical biology, (high-throughput) biochemistry, biophysics, proteomics, metabolomics, synthetic biology, modelling and simulation of biological systems. The research should extend or enrich structural systems biology, a broad concept that the unit is pursuing, in conjunction with a strong computational biology programme. > > More information in the enclosed advert. Don’t hesitate to get in touch if you have any questions and please do forward to promising young researchers in your group/institute. > > Thanks for your help! > > Best regards, > Christoph > ______________________________________________________________________ > Dr. Christoph W. Müller > Head of Structural and Computational Biology Unit > > EMBL > Meyerhofstrasse 1 > 69117 Heidelberg, Germany > > email: cmueller(a)embl.de <mailto:cmueller@embl.de>, christoph.mueller(a)embl.org <mailto:christoph.mueller@embl.org> > phone: 0049-6221-387-8320 > https://www.embl.org <https://urldefense.com/v3/__https://www.embl.org__;!!LQC6Cpwp!v1ufINgv94aza…> > https://www.embl.org/groups/mueller/ <https://urldefense.com/v3/__https://www.embl.org/groups/mueller/__;!!LQC6Cp…> > _______________________________________________________________________ >

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[Compbio-allhands] Immediately available: Two postdoctoral positions in stochastic thermodynamics
by David Sivak 29 Jun '22

29 Jun '22

We seek to hire two postdoctoral fellows to work on projects probing the fundamentals of nonequilibrium statistical physics, thermodynamics, information theory, and control theory. Both positions are at Simon Fraser University, home to a leading research effort on these questions and related areas of biophysics. We are just outside Vancouver, British Columbia, Canada, universally agreed to be one of the most livable cities in the world. One position is for a theorist, supervised by David Sivak, dsivak(a)sfu.ca. For details, see http://davidsivak.com/. One position is for an experimentalist, supervised by John Bechhoefer, johnb(a)sfu.ca. For details, see http://www.sfu.ca/chaos/. Interested candidates should send a cover letter and CV (including publication list and contact information for 2-3 references) to the appropriate address above. We are committed to ensuring that no individual is denied access to employment opportunities for reasons unrelated to ability or qualifications. Candidates who belong to underrepresented groups in Physics are particularly welcome to apply. Please forward this announcement to any interested parties. Thank you in advance! David Sivak John Bechhoefer -- David Sivak Assoc. Prof., Dept. of Physics, Simon Fraser U Tier-II Canada Research Chair, Nonequilibrium Statistical Biophysics dsivak(a)sfu.ca | davidsivak.com | 778-928-7995

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[Compbio-allhands] Summer 2022 Gladstone Data Science Training Program
by Zainab Yusufsada 27 Jun '22

27 Jun '22

<https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> View in Your Browser <https://mailchi.mp/gladstone/summer-2022-gladstone-data-science-training-pr…> GLADSTONE DATA SCIENCE PROGRAM*Bioinformatics Series Summer 2022* The Gladstone Data Science Training Program <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> provides learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Gain new skills and get support with your questions and data. The Data Science Training Program is virtual. Register for one or more of the workshops offered and you’ll learn helpful skills and get hands-on experience to master the bioinformatic tools you need to analyze your data. Summer 2022 Series <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> Introduction to R for Data Analysis <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> *Ayushi Agrawal, Michela Traglia* July 12 & 14, 2022 • 9am–12pm PDT Register <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> Introductory RNA-Seq <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> *Ayushi Agrawal, Michela Traglia* July 21–22, 2022 • 9am–12pm PDT Register <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> Hypothesis Testing <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> *Reuben Thomas* August 15-16, 2022 • 1–3pm PDT Register <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> Intermediate RNA Seq Analysis Using R <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> *Michela Traglia, Min-Gyoung Shin* September 13, 2022 • 9am–12pm PDT Register <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> VIEW THE SERIES <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> The Gladstone Data Science Training Program <https://gladstoneinstitutes.us10.list-manage.com/track/click?u=1a62a392ffda…> was started in 2018 to provide trainees with learning opportunities and hands-on workshops to improve their skills in bioinformatics and computational analysis. This program offers a series of workshops throughout the year to enable trainees to gain new skills and get support with their questions and data. View in Your Browser <https://mailchi.mp/gladstone/summer-2022-gladstone-data-science-training-pr…> © 2022 Gladstone Institutes. All rights reserved. Want to change how you receive these emails? Update your preferences <https://gladstoneinstitutes.us10.list-manage.com/profile?u=1a62a392ffda799e…> or unsubscribe from this list. <https://gladstoneinstitutes.us10.list-manage.com/unsubscribe?u=1a62a392ffda…> Gladstone Institutes 1650 Owens Street San Francisco, CA 94158 Add us to your address book <https://gladstoneinstitutes.us10.list-manage.com/vcard?u=1a62a392ffda799ebd…> Cordially, *Zainab Yusuf Sada* | Administrative Specialist Gladstone Institute of Data Science & Biotechnology 1650 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] Fwd: Looking for a compchemist
by Brian Shoichet 24 Jun '22

24 Jun '22

FYI ---------- Forwarded message --------- From: Daniel Ortwine <dortwine(a)nestedtx.com> Date: Fri, Jun 24, 2022 at 11:27 AM Subject: Looking for a compchemist To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Cc: Aysegul Ozen <aozen(a)nestedtx.com> Hi Brian, As you are aware I am consulting for Nested Pharmaceuticals (as well as Genentech). They are looking for a computational chemist, preferably with MD and some scripting experience. I attached the job description here. The hiring manager is Aysegul Ozen (copied here), who you know... Would you by chance have or know of any students or postdocs finishing up (or others, for that matter) that might be interested in working for Nested? I would very much appreciate you sending any candidates my way. Hopefully I'll see you at a future conference - I'll be at ACS Chicago this August and hopefully at the Gordon CADD conference next summer. Thanks in advance! Cheers, Dan Ortwine Ortwine Consulting LLC -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] Summer 2022 Gladstone Data Science Training Program
by Zainab Yusufsada 21 Jun '22

21 Jun '22

The Gladstone Data Science Training Program provides learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Gain new skills and get support with your questions and data. The Data Science Training Program is virtual. Register for one or more of the workshops offered and you’ll learn helpful skills and get hands-on experience to master the bioinformatic tools you need to analyze your data. Summer 2022 Series <https://gladstone.org/events?series=data-science-training-program> Introduction to R for Data Analysis Session 1-2 July 12 & 14, 2022 Register <https://gladstone.zoom.us/meeting/register/tJcsfuGupzwiGtce9atpUdrFzu_oJRKM…> Introductory RNA-Seq, Session 1-2 July 21-22,2022 Register <https://gladstone.zoom.us/meeting/register/tJEoceiqqzgvGtyOAA2Gs6Xw8SspY4G3…> Hypothesis tTesting Session 1-2 August 15-16, 2022 Register <https://gladstone.zoom.us/meeting/register/tJ0of-uqrzwvGd3BhiiYSxb7P2iMNS7U…> Intermediate RNA Seq Analysis Using R September 13, 2022 Register <https://gladstone.zoom.us/meeting/register/tJUpf-CsrTwsHNQwLJg8w_3QH0Jtfl83…>

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[Compbio-allhands] UPDATED: 6/30/22 Seminar with Hao Wu, Noon, GH Auditorium
by Flowers, Nicole 21 Jun '22

21 Jun '22

________________________________ From: Kwong, Michelle <Michelle.Kwong(a)ucsf.edu> Sent: Tuesday, June 21, 2022 11:48 AM To: Flowers, Nicole <Nicole.Flowers(a)ucsf.edu> Subject: Re: Vallee **UPDATED** Sorry!! Hi All, Hope you’re doing well! We have a special guest, Hao Wu, Ph.D., coming from Harvard Medical School. She will be holding a seminar about the inner workings of the inflammasome engine on Thursday, June 30th, 2022 from 12pm-1pm in Byers Auditorium in Genentech Hall, Mission Bay. Please see the flyer for more details. Anyone is welcome to come. We’re looking forward to seeing you there! Thank you!! Best, Michelle

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[Compbio-allhands] 6/30/22 Seminar with Hao Wu, Noon, GH Auditorium
by Flowers, Nicole 21 Jun '22

21 Jun '22

Hi All, Hope you’re doing well! We have a special guest, Hao Wu, Ph.D., coming from Harvard Medical School. She will be holding a seminar about the inner workings of the inflammasome engine on Friday, June 30th, 2022 from 12pm-1pm in Byers Auditorium in Genentech Hall, Mission Bay. Please see the flyer for more details. Anyone is welcome to come. We’re looking forward to seeing you there! Thank you!! Best, Michelle

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[Compbio-allhands] Fwd: AI/ML research opportunities at Genentech Research
by Lyu, Jiankun 15 Jun '22

15 Jun '22

FYI Begin forwarded message: From: "Kangway Chuang (CHUANGK4)" <chuang.kangway(a)gene.com<mailto:chuang.kangway@gene.com>> Subject: AI/ML research opportunities at Genentech Research Date: June 15, 2022 at 2:48:04 PM PDT To: jiankun.lyu(a)ucsf.edu<mailto:jiankun.lyu@ucsf.edu> This Message Is From an External Sender This message came from outside your organization. Dear JK, I wanted to pass along opportunities that may interest any graduating students or postdocs you might know. We have a few positions in my lab in the new Department of AI and ML within Genentech Research and Early Development. It's a unique balance of academic-style research with a focus on publishing with the opportunity to impact our real drug discovery efforts while collaborating with scientists across the entire organization. 1. We have one opening for a Postdoctoral Fellow with sponsorship for up to 4 years. Postdocs at Genentech are well-compensated, have a tremendous amount of intellectual freedom, and have a strong emphasis on publishing. Postdoctoral Fellow, Artificial Intelligence and Machine Learning in Drug Discovery<https://urldefense.com/v3/__https://careers.gene.com/us/en/job/GENEUS202206…> 2. There are additionally two open positions for full-time employees in our AI/ML department with a focus on machine learning for drug discovery. Again, there's flexibility in their exact focus depending on research interests, with opportunities to work on both applied and foundational machine learning problems, e.g. in geometric deep learning, virtual screening, molecular optimization, chemical reactions, and much more: AI Scientist / Sr. AI Scientist - Artificial Intelligence and Machine Learning<https://urldefense.com/v3/__https://careers.gene.com/us/en/job/GENEUS202205…> AI Scientist / Sr. AI Scientist - Artificial Intelligence and Machine Learning in Drug Discovery<https://urldefense.com/v3/__https://careers.gene.com/us/en/job/GENEUS202203…> Please don't hesitate to reach out if you have any questions and thanks in advance. All my best, Kangway Chuang, Ph. D. (he/him/his) Senior AI Scientist and Group Lead AI | ML Department in Research Biology Genentech Research and Early Development +1 (805) 754-0058 chuang.kangway(a)gene.com<mailto:chuang.kangway@gene.com>

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[Compbio-allhands] 6/2/22 BBC Seminar with Jiaoyang Jiang, PhD, Noon
by Flowers, Nicole 25 May '22

25 May '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jiaoyang Jiang, PhD University of Wisconsin-Madison Decoding sweet regulation at substrate-level implications for signaling disease. June 2, 2022 J. Weaver, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…>

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[Compbio-allhands] Fwd:
by Brian Shoichet 19 May '22

19 May '22

FYI. ---------- Forwarded message --------- From: Peter Schultz <schultz(a)scripps.edu> Date: Thu, May 19, 2022 at 7:24 AM Subject: To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Brian, we are looking for computational chemists to do structure-based design at Calibr as a PI. If you know of anyone that might be interested, I would love to chat with them. Thanks, Pete -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] 5/19/22 BBC Seminar with Liz Kellogg, PhD
by Flowers, Nicole 13 May '22

13 May '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Liz Kellogg, PhD Cornell University Mechanisms driving molecular innovation: Cryo-EM studies of CRISPR-associated transposons May 19, 2022 D. Chen, host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Hiring two people - share in your group? Connect soon?
by Andrej Sali 12 May '22

12 May '22

> Begin forwarded message: > > From: "James Arnold (ARNOLJ12)" <arnold.james(a)gene.com> > Subject: Hiring two people - share in your group? Connect soon? > Date: May 12, 2022 at 12:26:18 PM PDT > To: sali(a)salilab.org > > This Message Is From an External Sender > This message came from outside your organization. > Hi Andrej, > > I hope you are doing well, and I'd love to connect and catch up as your time allows. > > I am hiring for two roles, and looking for two great people. Here are the links to the postings. If you have a chance, could you please share with your groups, and others within our larger UCSF community? These two people can really make a difference, I think they will benefit from being on the team, and I'd appreciate your help finding them. > > Principal Data Scientist, Genentech > https://careers.gene.com/us/en/job/202203-109575/Senior-Principal-Data-Scie… <https://urldefense.com/v3/__https://careers.gene.com/us/en/job/202203-10957…> > > Lead/Senior Data Engineer, Genentech > https://careers.gene.com/us/en/job/GENEUS202204117622EXTERNALENUS/Lead-Seni… <https://urldefense.com/v3/__https://careers.gene.com/us/en/job/GENEUS202204…> > > Are there good times to connect in the coming weeks? > > Jim > > > James Arnold, PhD > Director, Data Science and Artificial Intelligence > Genentech > m: 415-216-5655, e: arnolj12(a)gene.com <mailto:faretta@gene.com>

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[Compbio-allhands] TODAY! 4 PM in GH Auditorium! Peter Kollman Lectureship with Ken Dill, PhD
by Flowers, Nicole 05 May '22

05 May '22

PETER A. KOLLMAN LECTURESHIP Ken Dill Stonybrook Thursday, May 5, 2022 4:00 PM Brian Shoichet, Host Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Reception to follow in Genentech Hall 1st Floor Atrium

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[Compbio-allhands] Register for Advanced Cytoscape Automation
by Zainab Yusufsada 04 May '22

04 May '22

GLADSTONE DATA SCIENCE PROGRAM*Advanced Cytoscape Automation* May 10, 2022 • 1–4pm Alex Pico Online Join this workshop if you’re already using R or Python and are curious about network analysis and visualization. You’ll learn how to integrate Cytoscape’s network capabilities into your bioinformatic workflows. LEARN MORE AND REGISTER <https://gladstone.org/events/advanced-cytoscape-automation-0>

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[Compbio-allhands] 5/5/22 Peter Kollman Lectureship with Ken Dill, PhD
by Flowers, Nicole 29 Apr '22

29 Apr '22

PETER A. KOLLMAN LECTURESHIP Ken Dill Stonybrook Thursday, May 5, 2022 4:00 PM Brian Shoichet, Host Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Reception to follow in Genentech Hall 1st Floor Atrium

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[Compbio-allhands] Fwd: question - re: co-crystal structure ligand based design
by Brian Shoichet 28 Apr '22

28 Apr '22

FYI ---------- Forwarded message --------- From: Robert Batey <rob.batey(a)utoronto.ca> Date: Thu, Apr 28, 2022 at 8:08 AM Subject: Re: question - re: co-crystal structure ligand based design To: Brian Shoichet <bshoichet(a)gmail.com> Dear Brian Hope that you are well. I don’t know whether you saw this, but we have a full-time tenure stream position in the area of computational chemistry applied to medicinal chemistry and chemical biology. The appointment is at the rank of Associate Professor or Professor with an expected start date of July 1, 2023. The posting for this position can be found here: https://jobs.utoronto.ca/job/Toronto-Associate-ProfessorProfessor-Computati…. All application materials, including reference letters, must be received by *May 17, 2022.* Successful candidates may also be nominated for a *Canada Excellence Research Chair <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.cerc.…>* in Medicinal Chemistry, AI/Machine Learning and Computational Chemistry, Chemical Biology valued at $1 million/year for 8 years. The Canada Excellence Research Chairs (CERC) program is intended to support world‑renowned researchers and their teams in establishing ambitious research programs at Canadian universities. Nominees to the CERC opportunity will be internationally leading researchers whose proposed research program aligns with one or more of the *Government of Canada’s Science, Technology and Innovation priority areas <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.cerc.…>*. The labs would be primarily located in the Princess Margaret Cancer Centre. I wonder whether you know anyone who you think might be appropriate? Would you share this opening with your networks? Let me know if you have any questions. Cheers Rob *From: *Undisclosed Recipients <rob.batey(a)utoronto.ca> *Date: *Wednesday, March 16, 2022 at 1:50 PM *To: *Brian Shoichet <bshoichet(a)gmail.com> *Cc: *Daniel Erlanson <erlanson(a)gmail.com> *Subject: *Re: question - re: co-crystal structure ligand based design Dear Brian and Dan (nice to be virtually acquainted btw, I enjoy the blog) Thanks for this – very helpful, and two interesting examples. In the case we have the two orientations are linked by a single bond rotation, and it enabled us to design an entirely new class of compound that allowed for both of the two orientations to be mimicked in a single compound. Cheers Rob –––––––––––––– Robert A. Batey, Ph. D. Professor and Chair Department of Chemistry <https://www.chemistry.utoronto.ca/>, LM 151 University of Toronto <https://www.utoronto.ca/> 80 St. George St., Toronto, ON CANADA, M5S 3H6 Chair's office: 416-978-3566; fax: 416-978-1631 Web: http://www.chem.utoronto.ca/staff/RAB/index.html Linked-In: https://www.linkedin.com/in/robert-batey-156221a2 I wish to acknowledge this land on which the University of Toronto operates <https://indigenous.utoronto.ca/about/land-acknowledgement/>. For thousands of years it has been the traditional land of the Huron-Wendat, the Seneca, and the Mississaugas of the Credit. Today, this meeting place is still the home to many Indigenous people from across Turtle Island and we are grateful to have the opportunity to work on this land. –––––––––––––– *From: *Brian Shoichet <bshoichet(a)gmail.com> *Date: *Saturday, February 5, 2022 at 8:47 PM *To: *Undisclosed Recipients <rob.batey(a)utoronto.ca> *Cc: *Daniel Erlanson <erlanson(a)gmail.com> *Subject: *Fwd: question - re: co-crystal structure ligand based design You don't often get email from bshoichet(a)gmail.com. Learn why this is important <http://aka.ms/LearnAboutSenderIdentification> Dear Rob, I rec'd these references from Dan Erlanson, copied. They speak to your case, I think you'll find them useful in framing your cool story. Brian ---------- Forwarded message --------- From: *Daniel Erlanson* <erlanson(a)gmail.com> Date: Sat, Feb 5, 2022 at 7:59 AM Subject: Re: question - re: co-crystal structure ligand based design To: Brian Shoichet <bshoichet(a)gmail.com> Hi Brian, Nice to hear from you! A couple examples come to mind, though I feel like there are more: https://practicalfragments.blogspot.com/2020/05/merging-two-of-same-fragmen… <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpractical…> https://practicalfragments.blogspot.com/2013/10/fragment-merging-revisited-… <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpractical…> BTW I liked your recent SARS-CoV-2 aggregation paper - unfortunately too much crap got published in the past couple years. Cheers, Dan -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbkslab.or…>* -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] 4/28/22 BBC Seminar with Karlene Cimprich, PhD
by Flowers, Nicole 22 Apr '22

22 Apr '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Co-sponsored by the [cid:93c19575-2d2a-4361-a102-7fb3b8de7827] Karlene Cimprich, PhD Stanford University RNA Meets DNA: Dangerous Liaisons in the Genome April 28, 2022 L. Weinberger, host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 4/21/22 BBC Seminar Cancelled
by Flowers, Nicole 15 Apr '22

15 Apr '22

Next week Thursday's BBC Seminar with Dr. Elizabeth Villa has been postponed. Please stay tuned for a rescheduled date. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 4/14/22 BBC Seminar with Tanja Mittag, PhD, Noon
by Flowers, Nicole 08 Apr '22

08 Apr '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Tanja Mittag, PhD St. Jude Children's Research Hospital Protein disorder, multivalency and phase separation: Implications for biological function and disease April 14, 2022 W. Weiss, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Check Out the Spring Line Up for the Gladstone Data Science Training Program
by Zainab Yusufsada 06 Apr '22

06 Apr '22

The Gladstone Data Science Training Program <https://gladstone.org/events?series=data-science-training-program> provides you with learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Join one of these upcoming workshops to gain new skills and get support with your data. Spring 2022 Series All workshops are virtual! Single Cell RNA-Seq Analysis April 15-19, 2022 Register <https://gladstone.org/events/single-cell-rna-seq-analysis-2> Statistics of Enrichment Analysis April 22, 2022 Register <https://gladstone.org/events/statistics-enrichment-analysis-0> Introductory Machine Learning for Biologists May 3, 2022 Register <https://gladstone.org/events/introductory-machine-learning-biologists-2> Advanced Cytoscape Automation May 10, 2022 Register <https://gladstone.org/events/advanced-cytoscape-automation-0> Cordially, *Zainab Yusuf Sada* | Administrative Specialist Gladstone Institute of Data Science & Biotechnology 1700 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] Fwd: Assistant Professor position Baylor College of Medicine
by Brian Shoichet 04 Apr '22

04 Apr '22

FYI ---------- Forwarded message --------- From: Palzkill, Timothy Gerald <timothyp(a)bcm.edu> Date: Mon, Apr 4, 2022 at 8:42 AM Subject: Assistant Professor position Baylor College of Medicine To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Dear Brian, I hope all is well with you. My department has a tenure track Assistant Professor position available. Our specific areas of interest for this position include computer-aided drug design (CADD), molecular dynamics (MD) simulations, protein design and folding prediction, application of machine learning and artificial intelligence (AI) to improve the target identification and drug discovery process. If your trainees are in the market for a faculty job, please pass this information along. They can find more detailed info and apply via this link https://bit.ly/36oTHSp or email directly to pharmacology(a)bcm.edu . Thanks, Tim Timothy Palzkill, Ph.D. Cullen Trust for Higher Education Chair Professor and Chair Department of Pharmacology and Chemical Biology Baylor College of Medicine -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] 4/7/22 Braisted Lecture with Alanna Schepartz
by Flowers, Nicole 01 Apr '22

01 Apr '22

UCSF-UCB Andrew Braisted Award Lectureship Livestream: http://tiny.ucsf.edu/Y5D1RO Alanna Schepartz, Ph.D. UC Berkeley Reimagining the Definition of a Protein Thursday, April 7, 2022 4 pm Genentech Hall Byers Auditorium UCSF Mission Bay Campus Contact: Charles Craik Sponsor: The Andrew Braisted Lecture Fund

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[Compbio-allhands] Check Out the Spring Line Up for the Gladstone Data Science Training Program
by Zainab Yusufsada 28 Mar '22

28 Mar '22

The Gladstone Data Science Training Program <https://gladstone.org/events?series=data-science-training-program> provides you with learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Join one of these upcoming workshops to gain new skills and get support with your data. Spring 2022 Series All workshops are virtual! Single Cell RNA-Seq Analysis April 15-19, 2022 Register <https://gladstone.org/events/single-cell-rna-seq-analysis-2> Statistics of Enrichment Analysis April 22, 2022 Register <https://gladstone.org/events/statistics-enrichment-analysis-0> Introductory Machine Learning for Biologists May 3, 2022 Register <https://gladstone.org/events/introductory-machine-learning-biologists-2> Advanced Cytoscape Automation May 10, 2022 Register <https://gladstone.org/events/advanced-cytoscape-automation-0> Cordially, *Zainab Yusuf Sada* | Administrative Specialist Gladstone Institute of Data Science & Biotechnology 1700 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] Fwd: Opportunities at Schrödinger - Protein Structure Prediction/Optimization Scientist (Dynamics Simulations/Enhanced Sampling)
by Brian Shoichet 24 Mar '22

24 Mar '22

FYI ---------- Forwarded message --------- From: Annabel Cook <annabel.cook(a)schrodinger.com> Date: Wed, Mar 23, 2022 at 10:09 AM Subject: Opportunities at Schrödinger - Protein Structure Prediction/Optimization Scientist (Dynamics Simulations/Enhanced Sampling) To: <bshoichet(a)gmail.com> Dear Prof Shoichet, My name is Annabel Cook and I work in the Strategic Growth team at Schrödinger, Inc. Following our recent acquisition of XTAL BioStructures in Natick, MA, we are significantly expanding our structural biology capabilities, and are seeking scientists with expertise in structural biology, and protein structure prediction, optimization, and refinement. One of several roles we are looking to fill is a Protein Structure Prediction/Optimization Scientist (Dynamics Simulations/Enhanced Sampling) position, and I thought you may have some current or former group members who would be interested in hearing about the role. If so, please feel free to forward my contact information. I have included the specifics of the role below and applicants may apply directly here <https://grnh.se/a34dade13us>. Thank you in advance for your help. Do not hesitate to contact me if you have any questions! Kind regards, Annabel Protein Structure Prediction/Optimization Scientist (Dynamics Simulations/Enhanced Sampling) We’re seeking a Protein Structure Prediction/Optimization Scientist to join us in our mission to improve human health and quality of life through the development, distribution, and application of advanced computational methods! As a member of our Desmond (Molecular Dynamics) team, you’ll facilitate the refinement and optimization of predicted structures (homology models or AlphaFold V2) and validate these models in predictive free energy calculations for lead optimization. By advancing our methodology and immediately applying it to both our and our customers’ drug-discovery platforms, you’ll help tackle diseases that have been recalcitrant to structure-based drug design in the past. Schrödinger’s recent acquisition of XTAL BioStructures puts us in a unique position to advance the state of the art in protein structure prediction and refinement with experimental validation and support. We have other openings in this area that require slightly different skill sets. Please see our posts for Protein Structure Prediction/Optimization Scientist (Machine Learning) <https://grnh.se/e759b1a83us> and Protein Structure Prediction/Optimization Scientist (Core Homology) <https://grnh.se/aa293f6b3us>. Who will love this job: - A computational chemist with experience in biomolecular simulation, enhanced sampling, and free energy calculations - A passionate scientist who loves to push the boundaries of existing technology and creatively comes up with new ideas to address important problems - A methods developer who can implement a prototype using modern coding practices What you’ll do: - Identify problems in predicted structures from homology models or AlphaFold and develop strategies for refinement - Collaborate with scientists in other teams, including Machine Learning and Prime (Protein Structure Prediction), to exploit new developments and iteratively refine our strategy to improve the quality of predicted structures - Work with our drug discovery group to deploy new technologies in active projects and realize real-world impact What you should have: - PhD in computational chemistry, biochemistry, biophysics, or a related field, with a robust track record of publications in biomolecular simulations or enhanced sampling techniques - Proficiency in building complex workflows with Python - Experience with pharmaceutically relevant proteins, such as kinases, GPCRs, proteases, transferases, and/or ion channels is a plus Pay and perks: Schrödinger understands it’s people that make a company great. Because of this, we’re prepared to offer a competitive salary, stock options, and a wide range of benefits that include healthcare (with dental and vision), a 401k, pre-tax commuter benefits, a flexible work schedule, and a parental leave program. We have catered meals in the office every day, a company culture that is relaxed but engaged, and over a month of paid vacation time. Our Administrative and Human Resources departments also plan a myriad of fun company-wide events. New York is home to our largest office, but we have teams all over the world. Schrödinger is honored to have been selected as one of Crain's New York Best Places to Work for the past three years running. -- *Annabel Cook, PhD* | Principal Associate, Strategic Growth [image: Schrödinger, Inc.] <https://schrodinger.com> Schrödinger is hiring! Check out our careers page <https://www.schrodinger.com/careers> Our transparency document according to article 13 and 14 GDPR is available here <https://schrodinger.com/transparencydocinc>. -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] 3/31/22 BBC Seminar with Joanna Wysocka
by Flowers, Nicole 24 Mar '22

24 Mar '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/Y5D1RO Co-sponsored by the [cid:705c2812-9d04-4873-93a4-a6d52e62f537] Joanna Wysocka, PhD Stanford University Transcriptional regulation and emergence of form and function during development and evolution Marh 31, 2022 L. Weinberger, host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Spring 2022 BBC Seminar Schedule
by Flowers, Nicole 18 Mar '22

18 Mar '22

Attached, please find the schedule of speakers for BBC Seminar Series spring quarter. Thank you! Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Canceled: 3/17/22 BBC Seminar with Squire Booker, PhD, Noon
by Flowers, Nicole 14 Mar '22

14 Mar '22

Unfortunately, Dr. Booker has a family emergency and will not be able to deliver his lecture. This seminar has been cancelled.

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[Compbio-allhands] Fwd: data science job posting at Novartis Emeryville
by Andrej Sali 10 Mar '22

10 Mar '22

Sent from my iPhone Begin forwarded message: > From: Dave Barkan <davebarkan(a)gmail.com> > Date: March 10, 2022 at 10:42:27 AM PST > To: Andrej Sali <sali(a)salilab.org> > Subject: data science job posting at Novartis Emeryville > > > Hi Andrej, > > Hope everything is going well. We have a new Structural Bioinformatician position opening in our Data Science group in Emeryville and I was wondering if you could circulate this link across relevant labs and graduate programs. This is a great opportunity for new PhDs and post-docs to get into the biotech industry while still working in an environment that emphasizes scientific curiosity. > > https://www.novartis.us/careers/career-search/job-details/339342BR > > Thanks, > Dave Barkan

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[Compbio-allhands] 3/17/22 BBC Seminar with Squire Booker, PhD, Noon
by Flowers, Nicole 24 Feb '22

24 Feb '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Squire Booker, PhD Pennsylvania State University Moving beyond methionine synthase: New insight into cobalamin-dependent methylation reactions Marh 17, 2022 D. Fujimori, host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Job at EMBL Hamburg - Senior Scientific Software Engineer: New Methods for Structural Modeling
by Andrej Sali 22 Feb '22

22 Feb '22

> Begin forwarded message: > > From: Jan Kosinski <jan.kosinski(a)embl.de> > Subject: Job at EMBL Hamburg - Senior Scientific Software Engineer: New Methods for Structural Modeling > Date: February 22, 2022 at 6:39:11 AM PST > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > We are having the below job opening, and I would be grateful if you could forward it to anyone who might be interested: > > We are seeking to recruit a Senior Scientific Software Engineer: New Methods for Structural Modeling, to develop and apply computational methods for modeling based on electron microscopy and other data, with the particular focus on using recent Artificial Intelligence-based modeling tools like AlphaFold and RoseTTAfold. Three years contract with possibility of extension. > > More information and application form: https://www.embl.org/jobs/position/HH00209 <https://www.embl.org/jobs/position/HH00209> > Closing date: 27 March 2022 > > Please check more about our lab <https://www.embl.org/groups/kosinski/> and our publications <https://www.embl.org/groups/kosinski/publications/>. > > We offer access to superb computational infrastructure, experimental data from electron microscopy and other techniques, competitive salaries, and excellent working conditions. > > Best, > Jan > > -- > Group leader at European Molecular Biology Laboratory (EMBL) Hamburg > Joint appointment Structural and Computational Biology Unit EMBL Heidelberg > Group leader at Centre for Structural Systems Biology (CSSB) > > c/o DESY, Building 15 (CSSB), Room 02.247 > Notkestraße 85 > 22607 Hamburg, Germany > Phone: +49(0)40 8998-87573 > https://www.embl.org/kosinski/ <https://www.embl.org/kosinski/> > https://www.cssb-hamburg.de/research/research_groups/kosinski_group/index_e… <https://www.cssb-hamburg.de/research/research_groups/kosinski_group/index_e…> > > Twitter: @jankosinski >

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[Compbio-allhands] Fwd: in silico modeling expert
by Brian Shoichet 15 Feb '22

15 Feb '22

FYI ---------- Forwarded message --------- From: Joseph Wu <joewu(a)stanford.edu> Date: Tue, Feb 15, 2022 at 9:39 PM Subject: RE: in silico modeling expert To: Brian Shoichet <bshoichet(a)gmail.com> Dear Brian, I hope all is well. I recently started a startup company using clinical genomics, AI/ML, and patient-specific iPSCs to accelerate drug discovery. I wonder if you know of any graduates in your program or department who may be interested in joining our company. The expertise would be as follow: 1.) Computational ligand screening (e.g. docking) for hit identification 2.) Hit-to-lead optimization for establishing quantitative structure-activity-relationship (QSAR) 3.) Computational protein modeling, e.g. homology modeling. If yes, please feel free to introduce me to him/her and I’ll be happy to set up a zoom call. Thank you in advance. Best wishes, Joe Joseph C. Wu, MD, PhD Director, Stanford Cardiovascular Institute Simon H. Stertzer, MD, Professor of Medicine & Radiology Stanford University School of Medicine 265 Campus Drive, Rm G1120B Stanford, CA 94305-5454 Ph: 650-736-2246; Fax: 650-736-0234 Email: joewu(a)stanford.edu Lab: http://wulab.stanford.edu Stanford CVI: http://med.stanford.edu/cvi <http://med.stanford.edu/cvi.html> [image: cid:image001.jpg@01D58538.54058B90] <http://med.stanford.edu/cvi.html> [image: cid:ff7027d6-b10c-47d4-9a0c-6aac03848d78] <https://twitter.com/Joseph_C_Wu> *From:* Brian Shoichet <bshoichet(a)gmail.com> *Sent:* Wednesday, November 3, 2021 11:19 AM *To:* Hao Zhang <zhanghao(a)stanford.edu> *Cc:* Stefan Gahbauer <steffgahbauer(a)gmail.com>; Joseph Wu < joewu(a)stanford.edu> *Subject:* Re: Mentor team for my career development grant (in collaboration with Stefan) Hi Hao, Yes, I'd be willing to do it. Brian On Wed, Nov 3, 2021 at 8:06 AM Hao Zhang <zhanghao(a)stanford.edu> wrote: Dear Brian, I hope you are doing well. In the past few months, Stefan and I have been working together to design novel compounds aiming to eliminate neurological off-target effects in CGS15943, a non-selective adenosine antagonist for antifibrotic therapy. Stefan and I had many discussions, in which he taught me the strategy for in-silico drug development, including ligand-receptor docking, protein homology prediction, and polarized side-chain design. The new design compound is being synthesized, and we will test the effects soon. I am writing a career development grant for the American Heart Association. As "in-silico based drug development" takes a major part of my proposal. I wonder if you would like to join my mentor team, responsible for the drug design. Our chemistry department or CRO is responsible for the chemical synthesis with your supervision. I can draft the mentor letter with your approval. Thanks for your consideration. Best wishes, Hao -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>* -- Brian Shoichet, Professor, UCSF latest science from the lab: *https://bkslab.org/ <https://bkslab.org/>*

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[Compbio-allhands] Fwd: Searching for Postdoc Candidate in AI/ML and mathematical methods for Biology @ IBM Almaden
by Andrej Sali 15 Feb '22

15 Feb '22

> Begin forwarded message: > > From: Sara CAPPONI <Sara.CAPPONI(a)ibm.com> > Subject: Searching for Postdoc Candidate in AI/ML and mathematical methods for Biology @ IBM Almaden > Date: February 12, 2022 at 4:24:23 PM PST > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Andrej, > > I hope that this email finds you well! > > I am reaching out because I was awarded as IBM PI of the NSF Center for Cellular Construction grant and I am looking for a postdoctoral researcher willing to work using advanced AI/ML methods for Biology. I am wondering if you are aware of someone looking for such position, e. g. a student in the final year of Ph.D. training or a postdoc at the end of the contract. If so, maybe you can point this person to me (sara.capponi(a)ibm.com <mailto:sara.capponi@ibm.com>). > > Also, I would appreciate if you could forward this email to anyone who might be interested in applying to this position. The postdoc ad is at the bottom of the email. > > Thanks for your time! > > Best, > Sara > > --------------- > > Postdoctoral Research Scientist in Cellular Engineering at IBM Almaden Research Center > > The Cellular Engineering laboratory at IBM Almaden Research Center is looking for a postdoctoral research scientist. The position is slated to begin immediately. The candidate is expected to apply advanced AI/ML methods in cellular engineering and synthetic biology to understand biological systems and cellular dynamics. > > The Cellular Engineering laboratory integrates multidisciplinary methods to understand the basic principles underlying cell functions in order to modify and build cells with designed activity. For this purpose, we have access to several IBM supercomputers, which are among the fastest in the world. The laboratory is part of the NSF Center for Cellular Construction in partnership with UC San Francisco, UC Berkeley, Stanford University, SF State University, and the SF Exploratorium. The overall goal of the Center is to develop an engineering discipline to design cells. The candidate will work in close collaboration with world known scientists. > > Our focus is to leverage AI/ML methods for harnessing the power of cells and develop powerful predictive models of cellular structure and function. The candidate is expected to integrate and develop novel AI/ML algorithms to understand the basic principles underlying cell functions in order to modify and build cells with designed activity. The ideal candidate should have strong background in computational biology and modeling, biophysics, AI/ML methods for biological system analysis and cellular dynamics. Relevant areas of expertise might include direct application of machine learning methods to cellular systems. > > Interested candidates should contact Sara Capponi, PhD, (sara.capponi(a)ibm.com <mailto:sara.capponi@ibm.com>) with a brief statement of research interest/cover letter, a CV, and contact information of 2-3 references. Students in their final year of Ph.D. training are encouraged to apply. > > > Qualifications: > > • PhD in Computational Biology, Computational Biophysics, Physics, Bioengineering or related field. > • Experience in chemistry, physics, engineering, computer science, computational biology, or related fields. > • Experience in computational modeling methods. > • Experience in machine learning, deep learning packages. > • Proven experience with python programming. > • Excellent English (oral and written) and good communication skills are necessary.

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[Compbio-allhands] Fwd: New position in computational chemistry, Pfizer Cambridge, MA
by John Irwin 15 Feb '22

15 Feb '22

Computational chemistry job at Pfizer in Cambridge. John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu ---------- Forwarded message --------- From: Mathiowetz, Alan M <alan.m.mathiowetz(a)pfizer.com> Date: Tue, Feb 15, 2022 at 10:53 AM Subject: New position in computational chemistry, Pfizer Cambridge, MA To: John Irwin <jir322(a)gmail.com> Hi, John- I wanted to let you know that we have a new opening for a computational chemist in my group at Pfizer, located in Cambridge, MA. The work primarily involves small molecule drug discovery in the therapeutic areas of Inflammation, Immunology, and Rare Diseases. If you know of a current or recent Ph.D. student or postdoc who is looking for such a position, please share the following link with them: Senior Scientist, Computational Chemistry Thank you and best regards, Alan

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[Compbio-allhands] Check Out the Winter Line Up for the Gladstone Data Science Training Program
by Zainab Yusufsada 12 Feb '22

12 Feb '22

The Gladstone Data Science Training Program <https://gladstone.org/events?series=data-science-training-program> provides you with learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Join one of these upcoming workshops to gain new skills and get support with your data. Winter 2022 Series All workshops are virtual this winter! Unix Command Line February 14, 2022 Register <https://gladstone.org/events/unix-command-line> Introduction to Statistics and Experimental Design February 22, 2022 Register <https://gladstone.org/events/introduction-statistics-and-experimental-desig…> Introduction to RNA-Seq, Sessions 1- 2 March 10–11, 2022 Register <https://gladstone.org/events/introduction-rna-seq-analysis-2> Intermediate RNA Seq Analysis Using R March 21, 2022 Register <https://gladstone.org/events/intermediate-rna-seq-analysis-using-r-0> Cordially, *Zainab Yusuf Sada* | Administrative Specialist Gladstone Institute of Data Science & Biotechnology 1700 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] 2/17/22 BBC Seminar with David Baker, PhD, Noon
by Flowers, Nicole 11 Feb '22

11 Feb '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF David Baker, PhD University of Washington Protein design using deep learning February 17, 2022 C. Bracken & P. Burroughs, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 2/10/22 BBC Seminar, HARC Lecture with Greg Towers, PhD, Noon, IN PERSON
by Flowers, Nicole 10 Feb '22

10 Feb '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursday, Noon Genentech Hall Byers Auditorium- IN PERSON Livestream: http://tiny.ucsf.edu/Y5D1RO HARC Speaker Greg Towers, Ph.D. University College London What's so special about pandemic viruses? HIV and SARS-CoV-2 vs. Innate Immunity February 10, 2022 N. Krogan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Check Out the Winter Line Up for the Gladstone Data Science Training Program
by Zainab Yusufsada 01 Feb '22

01 Feb '22

The Gladstone Data Science Training Program <https://gladstone.org/events?series=data-science-training-program> provides you with learning opportunities and hands-on workshops to improve your skills in bioinformatics and computational analysis. Join one of these upcoming workshops to gain new skills and get support with your data. Winter 2022 Series All workshops are virtual this winter! Introduction to R for Data Analysis February 4, 2022 Register <https://gladstone.org/events/introduction-r-data-analysis-2> Intermediate Cytoscape: Networks and Omics Data Visualization February 7, 2022 Register <https://gladstone.org/events/intermediate-cytoscape-networks-and-omics-data…> Unix Command Line February 14, 2022 Register <https://gladstone.org/events/unix-command-line> Introduction to Statistics and Experimental Design February 22, 2022 Register <https://gladstone.org/events/introduction-statistics-and-experimental-desig…> Introduction to RNA-Seq, Sessions 1- 2 March 10–11, 2022 Register <https://gladstone.org/events/introduction-rna-seq-analysis-2> Intermediate RNA Seq Analysis Using R March 21, 2022 Register <https://gladstone.org/events/intermediate-rna-seq-analysis-using-r-0> Cordially, *Zainab Yusuf Sada* | Administrative Specialist Gladstone Institute of Data Science & Biotechnology 1700 Owens Street, San Francisco, CA 94518 T 415.734.4827|zainab.yusufsada(a)gladstone.ucsf.edu

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[Compbio-allhands] 2/3/22 BBC Seminar with Vanessa Ruta, PhD, Noon
by Flowers, Nicole 28 Jan '22

28 Jan '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Vanessa Ruta, PhD Rockefeller University Sensing the scents: the structural and circuit mechanisms of olfaction February 3, 2022 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 1/27/22 BBC Seminar with Negar Rostamzadeh, PhD, Noon
by Flowers, Nicole 21 Jan '22

21 Jan '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Negar Rostamzadeh, PhD Google Rethinking Values in Machine Learning Research and Practice January 27, 2022 H. Goodarzi, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] a job at Interline Therapeutics
by Andrej Sali 18 Jan '22

18 Jan '22

https://pro.snaphire.com/interlinetx-careers/jobdetails/ajid/dgVJ7/Scientis… -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 1/13/22 BBC Seminar with Aaron Ring, MD, PhD, Noon
by Flowers, Nicole 07 Jan '22

07 Jan '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Aaron Ring, MD, PhD Yale Targeting the immune exoproteome January 13, 2022 C. Bracken & S. Elledge, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Winter 2022 BBC Seminar Schedule
by Flowers, Nicole 06 Jan '22

06 Jan '22

Happy New Year! Attached, please find the calendar for the Winter 2022 BBC Seminar Series. Note that some seminars are remote and some are planned as in-person. Our first seminar of the quarter is today at noon over zoom with Dr. Feng Zhang of MIT. Thank you, Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College
by Andrej Sali 05 Jan '22

05 Jan '22

Sent from my iPhone Begin forwarded message: > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Date: January 5, 2022 at 12:00:52 PM PST > Subject: FW: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College > > > > > From: Sternberg, Michael J E <m.sternberg(a)imperial.ac.uk> > Sent: 05 January 2022 19:51 > To: Sternberg, Michael J E <m.sternberg(a)imperial.ac.uk> > Subject: Bioinformatics and Data Intensive Biology - Lecturer/ Senior Lecturer/ Reader/ Professor at Imperial College > > Please advertise to suitable applicants. > > The Department of Life Sciences at Imperial College London is recruiting at any level from Lecturer to Professor in Bioinformatics and Data-intensive Biology: any aspect of data-intensive biology, e.g. utilising machine learning, including synthetic cells and/or engineered organisms, systems and synthetic biology, populations. https://www.imperial.ac.uk/jobs/description/NAT01065/lecturersenior-lecture… > > The advert is at https://www.jobs.ac.uk/job/CLV465/lecturer-senior-lecturer-reader-chair > The positions are open to outstanding candidates whose research and teaching is focused on seeking solutions for global challenges across the breadth of Life Sciences. Appointees are expected to broaden the Department’s research capabilities, while complementing our existing strengths (https://www.imperial.ac.uk/life-sciences/research/research-themes/) > > We especially welcome applicants who are female or from other under-represented groups. > > Duties and responsibilities > > Undertake original research at a high international standard in the following fields: Climate Change and Environmental Biology; Plant Sciences and Food Security; Human and Animal Health, Cell and Developmental Biology; Bioinformatics and Genomics. > Publish the results of this research in internationally recognised peer reviewed journals > Obtain external funding to support the research from Government Research Councils, Charity, Industry and other national and international funding agencies > Contribute to teaching and examination on appropriate courses of the undergraduate Biochemistry and Biological Sciences degree streams within the Department of Life Sciences > Contribute to teaching and examination on appropriate Masters courses within the Department of Life Sciences > Supervise MRes/MPhil/PhD research students > To undertake appropriate administrative tasks as directed by the Head of Department > To undertake necessary training and/or development > Full information on duties, responsibilities and criteria can be found in the Job Description. > > Essential requirements > > You must meet the following essential criteria (commensurate with the level of appointment) > > You should hold a PhD (or equivalent) in Life Sciences or a related discipline. > A developing or established, national or international reputation and expertise in your field of research > A proven track record in conducting high quality independent research, as evidenced by high quality publications in peer reviewed journals > Experience of training undergraduate and postgraduate students > Experience of preparing grant applications for submission > Experience of developing skills in leading, motivating, developing and managing the performance of colleagues > An effective communicator, conveying ideas and concepts clearly and effectively to a range of audiences through a variety of methods and media > An ability to raise significant research funding from a variety of sources > For further information about the college and benefit available to staff, please see the Further Particulars on our website. > > Candidates are required to complete an online application via our website at https://www.imperial.ac.uk/jobs/ > > Informal enquiries may be made to: Professor Anne Dell, (Head of Department; a.dell(a)imperial.ac.uk) or Professor Mark Isalan (Chair, Appointments Committee; m.isalan(a)imperial.ac.uk) > > For further information on the recruitment process please contact: Maria Monteiro, Senior Appointments Manager, email: m.monteiro(a)imperial.ac.uk Telephone: +44 (0)207 594 5498 > > Closing date: 21 January 2022 (Midnight GMT) > > The College is a proud signatory to the San-Francisco Declaration on Research Assessment (DORA), which means that in hiring and promotion decisions, we evaluate applicants on the quality of their work, not the journal impact factor where it is published. For more information, see https://www.imperial.ac.uk/research-and-innovation/about-imperial-research/… > > The College believes that the use of animals in research is vital to improve human and animal health and welfare. Animals may only be used in research programmes where their use is shown to be necessary for developing new treatments and making medical advances. Imperial is committed to ensuring that, in cases where this research is deemed essential, all animals in the College’s care are treated with full respect, and that all staff involved with this work show due consideration at every level. > > http://www.imperial.ac.uk/research-and-innovation/about-imperial-research/r… > > We are committed to equality of opportunity, to eliminating discrimination and to creating an inclusive working environment for all. We therefore encourage candidates to apply irrespective of age, disability, marriage or civil partnership status, pregnancy or maternity, race, religion and belief, gender identity, sex, or sexual orientation. We are an Athena SWAN Silver Award winner, a Disability Confident Leader and a Stonewall Diversity Champion. > > > > > > ******************************************** > Professor Michael J E Sternberg > Director Centre for Integrative Systems Biology and Bioinformatics (CISBIO) > Room 306 - Sir Ernst Chain Building > Department of Life Sciences > Imperial College London, London SW7 2AZ,UK > m.sternberg(a)imperial.ac.uk > http://www3.imperial.ac.uk/cisbio (CISBIO) > www.sbg.bio.imperial.ac.uk (Group's research) > > Tel +44 (0)20 7594 5212 > **************************************************************************** >

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[Compbio-allhands] Neomorph job opportunity
by Andrej Sali 18 Dec '21

18 Dec '21

https://careers-neomorph.icims.com/jobs/1666/data-scientist-ii%2c-molecular… <https://careers-neomorph.icims.com/jobs/1666/data-scientist-ii,-molecular-m…> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 1/6/22 BBC Seminar with Feng Zhang, PhD, Noon
by Flowers, Nicole 16 Dec '21

16 Dec '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Feng Zhang, PhD MIT Exploration of Biological Diversity January 6, 2022 P. Klauser & W. Shen, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Open Postdoc Positon
by Michael Keiser 09 Dec '21

09 Dec '21

---------- Forwarded message --------- From: Colin Smith <colin.smith(a)wesleyan.edu> Date: Thu, Dec 9, 2021 at 12:50 PM Subject: Open Postdoc Positon To: Colin Smith <colin.smith(a)wesleyan.edu> Dear Colleagues, I have a postdoc position currently open in my group to develop and apply computational techniques for refining NMR structures. I would appreciate it if you would distribute the description below to your lab members or colleagues that may know suitable candidates. Thanks and happy holidays! Colin Colin A. Smith Assistant Professor Department of Chemistry Wesleyan University +1 860 685-3274 http://smithlab.wesleyan.edu The Smith Lab at Wesleyan University has an immediate opening for a postdoc (http://smithlab.research.wesleyan.edu/joining) Our lab specializes in developing and applying methods for computationally modeling NMR data. We use these and other techniques to study dynamics of computationally designed proteins and allostery in natural proteins. We have recently developed the Kinetic Ensemble theoretical framework that allows us to rigorously model how many types of motion affect the Nuclear Overhauser Effect (NOE), which is foundational to NMR-based structure determination. We have shown that approximations made in traditional NOE-based structure determination can result in significant underfitting of the data. We would like to now extend this methodology to enable direct refinement of highly accurate protein ensembles using leading biomolecular modeling software packages. We are seeking an individual with programming experience in a compiled language like C++ who will create and apply next-generation NOE restraints using the Kinetic Ensemble methodology. Together with advanced NOE peak integration using our FitNMR software package, the overall goal is to develop a fully quantitative pipeline to generate the most accurate solution ensembles of proteins to date. We hope this will advance the field of NMR structure determination and yield insights into how the solution state dynamics of proteins at the atomic level differ from those found in crystals. Suitable candidates are encouraged to contact Prof. Colin Smith ( colin.smith(a)wesleyan.edu) to apply and/or discuss this opportunity. Individuals having demonstrated experience with high-performance programming in the context of a large existing codebase are especially well-suited for this position. -- Michael J Keiser, PhD Associate Professor, UCSF p/1-415-886-7651 calendly.com/mjke

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[Compbio-allhands] Fwd: Requesting your help in filling entry level Comp. Chem. Position
by Brian Shoichet 29 Nov '21

29 Nov '21

FYI ---------- Forwarded message --------- From: Suresh Singh <suresh.singh(a)eocystx.com> Date: Mon, Nov 29, 2021 at 5:22 PM Subject: Requesting your help in filling entry level Comp. Chem. Position To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Hi Brian, I hope you are doing well. Since September I have been heading the Computation group at EoCys Therapeutics, a stealth biotech start-up based in Cambridge, MA. We are funded with seed funding of $30 MM from Atlas Ventures and Access Biotechnology funds. We are 15-person company seeking to grow in the coming year to build our technology platform and the pipeline. Our technology platform comprises ultra-deep proteomics, bioinformatics, structural informatics, and machine learning. All our drug discovery targets are structurally enabled, and it plays a major part in our design process. I will appreciate you passing the job description to members of your group as well as other comp. chem. groups at UCSF. Thanks for your help in this effort. Best, Suresh -------------------------------------------------------------- Suresh B Singh Senior Vice President Computational Science & Structural Biology EoCys Therapeutics suresh.singh(a)eocystx.com 732-491-7470 -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Job Opportunity: Associate Scientific Editor – Cell Chemical Biology and Structure
by Andrej Sali 20 Nov '21

20 Nov '21

> Begin forwarded message: > > From: "Dey, Mishtu (ELS-CMA)" <deym(a)science.regn.net> > Subject: Job Opportunity: Associate Scientific Editor – Cell Chemical Biology and Structure > Date: November 19, 2021 at 6:59:21 AM PST > To: Andrej Sali <sali(a)salilab.org>, "Lima, Christopher/Sloan Kettering Institute" <LimaC(a)MSKCC.ORG> > > Hi Chris and Andrej, > > I hope you are doing well. > > I’d like to seek your help in passing around the word about a new opportunity at Cell Press, working as an editor for Cell Chemical Biology and Structure. Any life sciences PhD interested in being a scientific editor can apply. No previous editorial work is required with a preference for someone with chemical biology or structural biology background. > > We have a job posting <https://relx.wd3.myworkdayjobs.com/ElsevierJobs/job/London/Associate-Scient…> (also appended below), and it would be great if you could circulate it to various labs at UCSF/Sloan. If there is a trainee in your labs who might be interested, encourage them to apply. Please feel free to let me know if you need any specific information or, have any questions/concerns. > > Many thanks, > Mishtu > > > Mishtu Dey, Ph.D. | Editor-in-Chief | Cell Chemical Biology <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.cell.…> | > Cell Press <https://nam03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.cell.c…> | Cambridge, MA, USA | Tel: +1-508-239-8606 | @DeyMishtu <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.c…> | @CellChemBiol <https://nam03.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.c…> | > > > > > > Associate Scientific Editor – Cell Chemical Biology & Structure > Cell Chemical Biology and Structure are seeking a Scientific Editor to help publish the best research across both areas. We are looking for candidates with strong communication skills and research experience in one or more of the topics published in the journals - see our Aims and Scope - https://www.cell.com/structure/home <https://www.cell.com/structure/home> and https://www.cell.com/cell-chemical-biology/home <https://www.cell.com/cell-chemical-biology/home>. > The core responsibilities of this position include: > Assessing submitted research papers > Overseeing the peer review process > Recruiting exciting research studies and review material > Driving our front matter and diversity initiatives > Contribute to the ongoing development of both journals > Establishing relationships with researchers > Representing both journal and Cell Press at scientific meetings and visits to research institutions > Building effective working relationships with colleagues across Cell Press and beyond > Contributing to broader Cell Press initiatives to shape the future of science communication > > Qualifications: > Broad interests, love of science, and desire to learn. As an editor, you will need to understand the diverse science covered by Cell family of journals, and you will need to appreciate the issues and questions that drive different fields. > A talent for clear communication. Good editors help authors make their message clear, concise, and compelling, so readers know why the science is important and how it will impact their work. > Interest in digital communication and publishing trends. > Creativity, willingness to experiment, with and desire to improve. > The ability to organize, prioritize, and focus, and meet deadlines consistently is critical. > Great interpersonal skills. Collaboration and networking are core aspects of the job. > The ability to work successfully both independently and in a diverse global team. > PhD in a relevant discipline. > Applicants with a professional background such as running a research group or working in the biotech industry are encouraged to apply. > This is a full-time in-house editorial position based in our offices in either the Netherlands, UK, or US (London/Oxford UK, Amsterdam NL, or Cambridge, MA US ). We are also open to candidates who are eligible to be based in our China office locations (e.g. Shanghai/Beijing/ShenzhenChina). Cell Press offers an attractive salary and benefits package and a stimulating working environment. > To apply, please submit your CV and a cover letter indicating your reasons for being interesting in this role. Applications will be held in the strictest of confidence. > > About Cell Press: > Cell Press, which is part of Elsevier, is a dynamic, interactive, diverse, and creative scientific community located in the heart of Cambridge, MA, and with additional offices in the UK, the Netherlands, and China. With 100+ PhD scientists, a forward-looking and experienced editorial support and digital production team, a results-driven marketing and press office, and a vibrant commercial partnership group, Cell Press aims to facilitate effective scientific exchange and is a leader in communicating the most important scientific findings. > ----------------------------------------------------------------------- > Elsevier is an equal opportunity employer: qualified applicants are considered for and treated during employment without regard to race, color, creed, religion, sex, national origin, citizenship status, disability status, protected veteran status, age, marital status, sexual orientation, gender identity, genetic information, or any other characteristic protected by law. If a qualified individual with a disability or disabled veteran needs a reasonable accommodation to use or access our online system, that individual should please contact accommodations(a)relx.comor <mailto:accommodations@relx.comor> if you are based in the US you may also contact us on 1.855.833.5120.

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[Compbio-allhands] 12/2/21 BBC Seminar with Olga Boudker, PhD, Noon
by Flowers, Nicole 19 Nov '21

19 Nov '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Olga Boudker, PhD Weill Cornell Substrate discrimination and transport determinants in plasma membrane glutamate transporters December 2, 2021 R. Edwards & D. Minor, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f ________________________________________________________________________________ Microsoft Teams meeting Join on your computer or mobile app Click here to join the meeting<https://urldefense.com/v3/__https://teams.microsoft.com/l/meetup-join/19*3a… > Learn More<https://urldefense.com/v3/__https://aka.ms/JoinTeamsMeeting__;!!LQC6Cpwp!_h… > | Meeting options<https://urldefense.com/v3/__https://teams.microsoft.com/meetingOptions/?org… > ________________________________________________________________________________

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[Compbio-allhands] Fwd: Elmlund, new lab
by Andrej Sali 04 Nov '21

04 Nov '21

> Begin forwarded message: > > From: "Elmlund, Hans (NIH/NCI) [E]" <hans.elmlund(a)nih.gov> > Subject: Elmlund, new lab > Date: November 3, 2021 at 11:07:39 AM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Andrej: > > I hope this email finds you well. I’m writing to you because I am interested in recruiting computationally inclined post-doctoral students that are keen to apply their skills in the structural biology and nanoscience areas. I’m starting up a new computational electron microscopy (EM) lab at the National Institutes of Health at the Center for Structural Biology (CSB), Frederick, MD: > > https://ccr.cancer.gov/staff-directory/hans-elmlund <https://ccr.cancer.gov/staff-directory/hans-elmlund> > > My lab will continue to develop algorithms for liquid cell EM of nanocrystals and design tools for stream single-particle cryo-EM analysis in real time as well as pursuing computational methods development for integrative structural biology. > > Broadly, research within the CSB seeks to either directly advance our understanding of cancer mechanisms or to develop structural methodologies that may later be applied to answer cancer-related questions. A core objective is to develop and apply new tools for molecular characterization using novel biophysical and biochemical techniques including cryo-EM, NMR, X-ray diffraction and scattering methods. > > The cryo-EM kit that we currently have in-place (and running) at the Frederick site: > > Titan G4 with pre and post GIF Falcon 4 (to be upgraded to 4i early spring), Selectris filter > Arctica with BioQuantum and K3 > Aquilos II (with online fluorescent scope to be mounted 2022) > 120 kV screening instrument > Leicabot > 2 x Vitrobots > Chameleon > Extensive HPC resources for real time streaming of data > > If you could please forward my contact details to prospective fellows, I would greatly appreciate it and I’m happy to provide additional information. The NIH just declared that non-mission critical travel is now allowed (subject to approval) so I hope we can meet in person soon. > > With best regards > > -- > HANS ELMLUND PhD > Senior Investigator > > National Institutes of Health > National Cancer Institute—Frederick Campus > 1050 Boyles St, Fredrick MD 21702 > United States of America > > T: +1(240)739-9079 > E: hans.elmlund(a)nih.gov <mailto:hans.elmlund@nih.gov> > simplecryoem.com <http://simplecryoem.com/>

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[Compbio-allhands] 11/4/21 Clements Lecture with with Marco Mravic, PhD
by Flowers, Nicole 29 Oct '21

29 Oct '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Biophysics Alumnus Marco Mravic Clements Lecture Membrane Protein Design: biophysical principles and chemical biology tools November 4, 2021 B. DeGrado, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry.

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[Compbio-allhands] Fwd: Faculty search in quantitative virology
by Andrej Sali 28 Oct '21

28 Oct '21

Sent from my iPad Begin forwarded message: > From: Frank Alber <falber(a)g.ucla.edu> > Date: October 28, 2021 at 9:48:10 PM PDT > To: Andrej Sali <sali(a)salilab.org> > Subject: Faculty search in quantitative virology > > Dear Andrej, > > I hope things are going well. > I wanted to let you know that our department has a faculty search for a position in Quantitative Virology. It could be fully computational or partial computational/experimental. I just wanted to let you know in case you know some people who might be interested. > So I attach the search description and also a pdf of the description here in this email. > > Best wishes, > Frank > > > ——————————————------------------------------------------------------------------------------------ > > View this position online: https://recruit.apo.ucla.edu/JPF06810 > Apply now: https://recruit.apo.ucla.edu/JPF06810/apply > > Tenure Track Assistant or Associate Professor in Quantitative Virology > > POSITION OVERVIEW > Position title: Assistant or Associate Professor > > APPLICATION WINDOW > Open date: October 5th, 2021 > Next review date: Monday, Nov 8, 2021 at 11:59pm (Pacific Time) > Apply by this date to ensure full consideration by the committee. > Final date: Wednesday, Nov 17, 2021 at 11:59pm (Pacific Time) > Applications will continue to be accepted until this date, but those received after the review date will only be considered if the position has not yet been filled. > > POSITION DESCRIPTION > Tenure Track Assistant or Associate Professor in Quantitative Virology > The Department of Microbiology, Immunology & Molecular Genetics (MIMG) and the Institute for Quantitative and Computational > The ideal candidates will lead a creative and impactful research program in quantitative virology and/or pathogen-immune interactions and/or viral pathogenesis. The candidate will employ cutting edge theoretical approaches, computational approaches of data analysis, and/or dynamical modeling. The successful candidate may seek to have a wet lab for data generation or leverage public or collaborator data. > UCLA hosts thriving communities of microbial, cell, and systems biology, virology and immunology, computational biologists, and is well- > The successful candidate will contribute to our undergraduate and graduate teaching missions in the MIMG major, and in the Computational > Questions regarding the position should be sent to Frank Alber at falber(a)g.ucla.edu. The following materials should be submitted online: > > Submit materials to https://recruit.apo.ucla.edu/analyst/recruitments/JPF06810/details . > Application review will begin on November 8, 2021. > As UCLA is California's largest university with a diverse student body, we encourage applications from women, minorities, and individuals with a commitment to mentoring students from backgrounds traditionally under-represented in the sciences. > > Department: https://www.mimg.ucla.edu/ > > QUALIFICATIONS > Basic qualifications (required at time of application) > PhD or equivalent degree in computational, molecular, cell or systems biology, virology, genetics, ecology and evolutionary biology, biochemistry, bioengineering, physics, mathematics, or computer science or related fields. > > APPLICATION REQUIREMENTS > MIMG/QCBio 2021-22 > Generated Oct 5, 2021 at 3:34pm Page 1 > MIMG/QCBio 2021-22 (JPF06810) > Document requirements > Curriculum Vitae - Your most recently updated C.V. > Cover Letter > Statement of Research - Including past accomplishments and future plans Statement of Teaching > Statement on Contributions to Equity, Diversity, and Inclusion - An EDI Statement describes a faculty candidate’s past, present, and future (planned) contributions to equity, diversity, and inclusion. To learn more about how UCLA thinks about contributions to equity, diversity, and inclusion, please review our Sample Guidance for Candidates and related EDI Statement FAQ document. > Notable Pieces of Work - Up to three key papers exemplifying the applicant’s research accomplishments > Reference requirements > 3 letters of reference required > Please submit at least three letters of recommendation > > Apply link: https://recruit.apo.ucla.edu/JPF06810 > Help contact: cvonderach(a)mednet.ucla.edu > > CAMPUS INFORMATION > The University of California is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age or protected veteran status. For the complete University of California nondiscrimination and affirmative action policy, see: UC Nondiscrimination & Affirmative Action Policy. > > JOB LOCATION > Los Angeles, CA > > > > >

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[Compbio-allhands] CORRECTION: 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 25 Oct '21

25 Oct '21

This week’s seminar with Jeremy England, PhD is indeed on: THURSDAY, OCTOBER 28, 2021 NOON An updated outlook invitation was just sent as well. BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Canceled: 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 25 Oct '21

25 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/28/21 BBC Seminar with Jeremy England, PhD, Noon
by Flowers, Nicole 22 Oct '21

22 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Jeremy England, PhD Georgia Tech Self-Organization of Lifelike Behaviors October 28, 2021 D. Rajan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: Looking for Data Scientists
by Andrej Sali 11 Oct '21

11 Oct '21

see some job opportunities for data scientists. -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Patrick Weinkam <pweinkam(a)gmail.com> > Subject: Re: Looking for Data Scientists > Date: October 11, 2021 at 4:15:56 PM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > Thanks for helping to post the job list. See attached or the link below for the same job description: > > https://www.linkedin.com/jobs/view/2733281748/ <https://www.linkedin.com/jobs/view/2733281748/> > We anticipate growing and hiring consistently so if you do know someone interesting in going into data science, please do not hesitate to send them my way. > > Thanks! > > Pat > > >

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[Compbio-allhands] 10/14/21 BBC Seminar with Carlos Bustamante, PhD, Noon
by Flowers, Nicole 07 Oct '21

07 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Please do not share this link outside of UCSF Carlos Bustamante, PhD UC Berkeley Division of Labor and Mechanism of Translocation of a Ring ATPase October 14, 2021 M. Jaime Garza, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/7/21 BBC Seminar with Chloe-Agathe Azencott, PhD, 9 AM
by Flowers, Nicole 07 Oct '21

07 Oct '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays Zoom: http://tiny.ucsf.edu/pUYmCK *please do not share this link outside of UCSF Chloe-Agathe Azencott, PhD CBIO Mines ParisTech, Institut Curie, INSERM Network-guided genome-wide association studies October 7, 2021 **9 AM** C. Stephens, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Fwd: MSK Tenure-Track Faculty Position in Chemistry or Chemical Biology
by Tom Ferrin 05 Oct '21

05 Oct '21

-------- Forwarded Message -------- Subject: MSK Tenure-Track Faculty Position in Chemistry or Chemical Biology Date: Thu, 30 Sep 2021 21:01:52 +0000 From: marquezj(a)mskcc.org To: tef(a)cgl.ucsf.edu ThomasFerrin Professor Chemistry and Chemical Biology University of California, San Francisco San Francisco, CA 94158 *Re: Tenure-Track Faculty Position in Chemistry or Chemical Biology* Dear Professor Ferrin, I write to request your assistance in identifying innovative individuals for a tenure-track position in the Chemical Biology Program at the Memorial Sloan Kettering Cancer Center (MSK). We seek candidates with strong research accomplishments in chemical biology or organic chemistry and interests in bringing chemical approaches to bear upon problems at the interface with biomedical research, including basic and translational research and across all disease areas. Women and candidates from underrepresented groups are especially encouraged to apply. MSK has a rich history in chemical research spanning over 70 years, and we are continuing our recent expansion in this area. We provide a unique and collaborative scientific environment, exceptional research facilities and resources, and generous startup packages. Faculty are eligible to hold appointments in and to recruit students from multiple outstanding graduate programs, including the Tri-Institutional PhD Program in Chemical Biology, Tri-Institutional MD-PhD Program, Gerstner Sloan Kettering Graduate School of Biomedical Sciences, and Weill Cornell Graduate School of Medical Sciences. The application deadline is*October 15, 2021*. Interested candidates should visithttps://facultysearch.ski.edu <https://facultysearch.ski.edu/>to access the online application and to obtain important information on required application materials and deadlines. Applicants must have a PhD degree in chemistry, biochemistry, chemical biology, or a closely related discipline, and a strong track record of scientific achievement. A copy of the search advertisement is below. If you have anyone you believe would be interested in applying or if there is someone you would like to recommend, please feel free to contact me directly. Sincerely, *Derek S. Tan, PhD* Chairman, Member, and Tri-Institutional Professor Chemical Biology Program *Memorial Sloan Kettering Cancer Center* 1275 York Ave., New York, NY 10065 T: 646-888-2234 • F: 646-422-0416 • tand(a)mskcc.org • www.dstan.org Director, Tri-Institutional PhD Program in Chemical Biology T: 212-746-5267 • F: 212-746-8992 • chembio.triiprograms.org ===================================================================== Please note that this e-mail and any files transmitted from Memorial Sloan Kettering Cancer Center may be privileged, confidential, and protected from disclosure under applicable law. If the reader of this message is not the intended recipient, or an employee or agent responsible for delivering this message to the intended recipient, you are hereby notified that any reading, dissemination, distribution, copying, or other use of this communication or any of its attachments is strictly prohibited. If you have received this communication in error, please notify the sender immediately by replying to this message and deleting this message, any attachments, and all copies and backups from your computer.

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[Compbio-allhands] structural biology position at Vir Bio Inc
by Andrej Sali 09 Sep '21

09 Sep '21

https://jobs.lever.co/vir/fdbfc8f1-fe73-49e1-a2b2-dee1b6a03554 <https://jobs.lever.co/vir/fdbfc8f1-fe73-49e1-a2b2-dee1b6a03554> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Positions in Sweden
by Andrej Sali 22 Aug '21

22 Aug '21

> Begin forwarded message: > > From: Arne Elofsson <arne(a)bioinfo.se> > Subject: Positions in Sweden > Date: August 22, 2021 at 12:59:50 AM PDT > To: undisclosed-recipients:; > > Dear friend > > As you might have heard we have just started an extremely well-funded program in data-driven life science in Sweden (total budget $300M). Now we are recruiting the first 20 (7 in Stockholm) assistant professors. These tenure-track positions are really well-funded ($2M in startup - priority access to a Nvidia Superpod etc). If you know of any good postdocs that you think might be interested could you send me their names so that I can contact them? The strict deadline is Sep 5 I think and one caveat is that there is a strict limit that the candidates should be maximum five years from their PhD. More information can be found here: https://www.scilifelab.se/data-driven/fellows/ <https://www.scilifelab.se/data-driven/fellows/> > > Yours > > Arne >

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[Compbio-allhands] Fwd: Rockefeller University Faculty Open Search 2021
by Andrej Sali 19 Aug '21

19 Aug '21

> Begin forwarded message: > > From: Nathaniel Heintz <heintz(a)rockefeller.edu> > Subject: FW: Rockefeller University Faculty Open Search 2021 > Date: August 19, 2021 at 6:33:00 AM PDT > To: Nathaniel Heintz <heintz(a)rockefeller.edu>, Kasia Turbek <kturbek(a)rockefeller.edu>, Jill Benz <benzj(a)rockefeller.edu> > > Dear Colleague, > > Under the leadership of our President, Richard P. Lifton, The Rockefeller University continues its effort to recruit outstanding new Heads of Laboratory. The right candidate will have a creative and rigorous research program and will be highly interactive with our small but exceptional research community. In return, The Rockefeller University is committed to fostering outstanding scientists through a superb research environment and resources to promote innovative research. > > We are writing to seek your help in identifying highly motivated and innovative scientists working in any of the following major areas of research: > > - Biochemistry, Biophysics, Chemical Biology, and Structural Biology > - Cancer Biology > - Cell Biology > - Genetics and Genomics > - Neurosciences and Behavior > - Immunology, Virology, and Microbiology > - Organismal Biology and Evolution > - Mechanisms of Human Disease > - Physical, Mathematical, and Computational Biology > - Stem Cells, Development, Regeneration, and Aging > > The Search Committee would appreciate greatly your assistance in encouraging exceptional candidates to apply. We seek tenure-track faculty candidates possessing either a Ph.D. degree, an M.D. degree, or both. We also welcome applications from tenured scientists at an early stage of their career. Applications are being accepted electronically through our Online Application System at: http://oas.rockefeller.edu <http://oas.rockefeller.edu/>. Our application deadline is October 1, 2021. > > We would also be grateful for your suggestions of specific candidates we should consider. We are especially interested in the names of women or under-represented minority candidates whom we might contact and encourage to apply. Please forward any recommendations you may have to: facultysearch(a)rockefeller.edu. <x-msg://39/facultysearch@rockefeller.edu.> > > Further information regarding our current search can be found in the attached advertisements and at http://www.rockefeller.edu/facultysearch. <http://www.rockefeller.edu/facultysearch.> > > We very much appreciate your help with this important effort. > > Best regards, > > Nathaniel Heintz > Chair, 2021-2022 Faculty Open Search Committee > James and Marilyn Simons Professor > Howard Hughes Medical Institute > The Rockefeller University > >

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[Compbio-allhands] Fwd: Opening for computational chemist in my group
by Brian Shoichet 13 Aug '21

13 Aug '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Patrick Lee <plee(a)mazetx.com> Date: Fri, Aug 13, 2021, 3:24 PM Subject: Opening for computational chemist in my group To: Brian Shoichet <bshoichet(a)gmail.com>, John Irwin <jir322(a)gmail.com> Hello Brian and John, Hope you’ve been well. As an FYI I have an entry level computational chemist opening at Maze so if you know of any qualified individuals who may be interested, please feel free to have them e-mail me directly. The job should be posted on our website (https://mazetx.com/careers/) next week. Patrick This email and any attachments may contain CONFIDENTIAL or PRIVILEGED information and is a private communication between the intended addressee and Maze Therapeutics, Inc. If you have received this email in error, reading, copying, using or disclosing its contents to others is prohibited. Please notify us of the delivery error by replying to this message and then delete it from your system. Thank you.

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[Compbio-allhands] Fwd: EMBL Cell Biology & Biophysics Group Leader recruitment 2021
by Andrej Sali 06 Aug '21

06 Aug '21

> Begin forwarded message: > > From: Jan Ellenberg <jan.ellenberg(a)embl.de> > Subject: EMBL Cell Biology & Biophysics Group Leader recruitment 2021 > Date: August 6, 2021 at 3:45:46 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > I would like to draw your attention to the opening for two group leader positions in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry, engineering or mathematics who want to pursue original and interdisciplinary research in cutting-edge molecular cell biology or imaging technology development. > > Regarding research topic, our call is broad and not limited to a particular topic. In the area of cell biology, the candidate’s research should aim at elucidating the molecular mechanism of an important biological function at the cellular level and we would for example also welcome applicants that plan to work in unusual, including marine and bacterial, model systems, or that take a theoretical approach to model dynamic cell biological processes. In the area of imaging technology, we would for example welcome applicants that develop novel microscopy technologies to probe the molecular or physical structure and function of cells. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and not too rarely even immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > > Jan > > Dr. Jan Ellenberg > Head, Cell Biology and Biophysics Unit > > Head EMBL Imaging Centre > > European Molecular Biology Laboratory (EMBL) > > Meyerhofstr. 1 > > D-69117 Heidelberg > > Germany > > T +49-6221-387-8391 > > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.org/research/units/cell-biology-biophysics/ <http://www.embl.org/research/units/cell-biology-biophysics/> > www.embl.org/about/info/imaging-centre/ <http://www.embl.org/about/info/imaging-centre/> > > > > > > > > > > > >

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[Compbio-allhands] Fwd: Computational Chemist I Opening @ Broad Institute of MIT & Harvard
by Brian Shoichet 19 Jul '21

19 Jul '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: AJ Campbell <arthurc(a)broadinstitute.org> Date: Mon, Jul 19, 2021, 1:49 PM Subject: Computational Chemist I Opening @ Broad Institute of MIT & Harvard To: Brian Shoichet <shoichet(a)cgl.ucsf.edu> Hi Dr. Shoichet, I hope you're doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join the Center for the Development of Therapeutics (CDoT) CADD group at the Broad Institute and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance current therapeutic projects within CDoT through structure-based and ligand-based modeling approaches. Please take a look at the exciting pipeline of projects we are working on: Here are the links to the job description: https://broadinstitute.wd1.myworkdayjobs.com/broadinstitute_cdot/job/Cambri… Please let me know if you have any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect them with our recruiter, Aruna Mandulapalli, to fill in the details - she can be reached at amandula(a)broadinstitute.org Let me know if you have any questions and many thanks! Best, AJ *Working at CDoT <https://www.broadinstitute.org/center-development-therapeutics/working-cdot> - Broad Institute of MIT & Harvard* *Broadminded Blog:* A drug discovery scientist discusses the Broad Institute’s unique role in drug development <https://www.broadinstitute.org/blog/whyiscience-qa-drug-discovery-scientist…> *CDoT Publications <https://www.broadinstitute.org/publications-list/1146>* *- CDoT's scientific leadership has an average of 15 years of Drug Discovery career experience and have advanced 32 compounds into the clinic. Together, they lead an organization of 80 research scientists and associates, 60% of whom have doctorates in relevant fields or areas of expertise.* *Arthur J Campbell, Ph.D.* Group Leader, Senior Computational Chemist I _________________________________________ *The Broad Institute of MIT and Harvard* Center for the Development of Therapeutics Stanley Center for Psychiatric Research 415 Main Street, Cambridge, MA 02142 Tel 1-617-714-7372 Email ArthurC(a)BroadInstitute.org www.BroadInstitute.org

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[Compbio-allhands] Fwd: Job openings for "Assistant professor in data-driven cell and molecular biology"
by Andrej Sali 17 Jun '21

17 Jun '21

Sent from my iPhone Begin forwarded message: > From: Arne Elofsson <arne(a)bioinfo.se> > Date: June 17, 2021 at 2:13:10 PM GMT+2 > To: socbin(a)socbin.org, 3d-bioinfo-all-contacts <3d-bioinfo-all-contacts(a)live.ucl.ac.uk>, 3D-BioInfo-SC <3d-bioinfo-sc(a)live.ucl.ac.uk> > Subject: Job openings for "Assistant professor in data-driven cell and molecular biology" > > > > Dear colleagues > > Sorry for disturbing you. > > We have a number of extremely good positions in Sweden with deadlines in the fall. They are tenure track and funded by a new initiative by the Wallenberg foundation with approximately $2M in startup funding. Additional funding will be available to apply for. The main rule is that you have to be within 5 years from your PhD (with additional time allowed for parental leave, military service etc). In total there are 20 positions, with approximately 5 of these relevant to our community (the others are in Precision medicine, evolution and biodiversity, epidemiology and infection biology) > > The title of all position is "Assistant professor in data-driven cell and molecular biology", but a slight variation on the descriptions exist (but in principle, you could apply for all (although obviously the best in Stockholm University as I can get you as my colleague). > > A general link for all positions can be found here: https://www.scilifelab.se/data-driven/fellows/ > > Here are links to the five positions > Stockholm University (2 positions) > https://www.su.se/english/about-the-university/work-at-su/available-jobs?rm… > KTH: "A specific focus is the development of methods that take a quantitative approach to cell and molecular biology with potential to give new insights of biophysical relevance." > https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:406593/wher… > Chalmers: > https://www.chalmers.se/en/about-chalmers/Working-at-Chalmers/Vacancies/Pag… > Linköping University > https://liu.se/jobba-pa-liu/lediga-jobb/ (link not available yet) > > > I would appreciate that if you could spread the information to any suitable candidate, and if anyone wants to contact me please ask them to do so. > > Yours > > Arne > > > ----------------------------------------- > Arne Elofsson Science for Life Laboratory > Tel:+46-(0)70 695 1045 Stockholm University > http://bioinfo.se/ Box 1031, > Email: arne(a)bioinfo.se 17121 Solna, Sweden > Twitter: https://twitter.com/arneelof > Scholar: http://scholar.google.se/citations?user=s3OCM3AAAAAJ > ORCID: 0000-0002-7115-9751

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[Compbio-allhands] Fwd: Life, Job
by Brian Shoichet 14 Jun '21

14 Jun '21

FYI. I think highly of this company, fwiw. ---------- Forwarded message --------- From: Jonathan Mason <Jonathan.Mason(a)soseiheptares.com> Date: Mon, Jun 14, 2021 at 2:25 PM Subject: Fwd: Life, Job To: Brian Shoichet <bshoichet(a)gmail.com> Hi Brian, I hope that all is well with you and things are going well with the group. Heptares has more comp chem positions open. Please let me know if you know of anyone with GPCR experience who could be suitable and let anyone who could be interested know. Hoping to see you again soon! Thanks and Best Wishes Jon Computational Chemist position https://cezanneondemand.intervieweb.it/heptares/jobs/computational_chemist_… Jonathan Mason PhD CChem FRSC Senior Research Fellow d +44 (0)1223 949214 m +44 (0)7540 689784 e *Jonathan.Mason(a)SoseiHeptares.com* <Jonathan.Mason(a)soseiheptares.com> <https://www.soseiheptares.com/> Steinmetz Building Granta Park Cambridge CB21 6DG United Kingdom The information in this e-mail is confidential and may be legally privileged. It is intended for the exclusive attention of the addressee stated above and should not be copied or disclosed to any other. If you have received this transmission in error, please contact the sender immediately, make no use of its contents and delete this message from your system. ontact and registered office address: Heptares Therapeutics Limited, Granta Park, Great Abington, Cambridge, CB21 6DG. Company No: 06267989. -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 6/3/21 BBC Seminar with Vincent Tagliabracci, PhD- FINAL SEMINAR
by Flowers, Nicole 28 May '21

28 May '21

Final seminar of the year BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vincent Tagliabracci, PhD UT Southwestern Expanding the kinome June 3, 2021 N. Jura, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 5/20/21 BBC Seminar with Wes Sundquist, PhD
by Flowers, Nicole 12 May '21

12 May '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… HARC Lecture Wes Sundquist, PhD University of Utah Structure and Function of the HIV Capsid May 20, 2021 N. Krogan, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 5/13/21 Seminar with Lawrence Hamann
by Flowers, Nicole 06 May '21

06 May '21

Seminar with Dr. Lawrence Hamann Takeda Pharmaceuticals EXPANDING THE DRUGGABLE GENOME THROUGH CEREBLON-MEDIATED PROTEIN DEGRADATION Danica Galonic Fujimori, Host May 13, 2021 Noon https://urldefense.com/v3/__https://ucsf.zoom.us/j/93580865207?pwd=dlU3MXpO… Meeting ID: 935 8086 5207 Password 459156 Flyer attached Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 5/6/21 BBC Seminar with Helen Blackwell, PhD
by Flowers, Nicole 30 Apr '21

30 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Helen Blackwell, PhD University of Wisconsin-Madison Chemical Interventions into Bacterial Cell-Cell Signaling May 6, 2021 W. Shen, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/29/21 BBC Seminar with Demet Araç, PhD
by Flowers, Nicole 23 Apr '21

23 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Demet Araç, PhD University of Chicago Cellular Communication via Adhesion in the Nervous System April 29, 2021 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Fwd: Open position in our Lab, please distribute
by Andrej Sali 19 Apr '21

19 Apr '21

Begin forwarded message: > > From: Marc Marti-Renom <martirenom(a)cnag.crg.eu> > Subject: Open position in our Lab, please distribute > Date: April 19, 2021 at 8:19:03 AM PDT > To: "Marc A. Marti-Renom" <martirenom(a)cnag.crg.eu> > > Dear friends and colleagues, > > Apologies for the mass email. I would love if you can distribute this advertisement along your colleagues. > > We are looking for a Postdoctoral fellow who would like to join our lab in Barcelona to work on spatial transcriptomics and cancer as part of a larger interdisciplinary team. > > You can read more details here: https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct… <https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct…> > > Thanks and stay safe! > Marc > ... > Marc A. Marti-Renom, ICREA Research Professor > Structural Genomics Group Leader > Centre Nacional d’Anàlisi Genòmica - Centre de Regulació Genòmica (CNAG-CRG) > The Barcelona Institute of Science and Technology (BIST) > Parc Científic de Barcelona – Torre I (10th floor) > Baldiri Reixac, 4, 08028 Barcelona > Tel +34 9340 33743 > Email: martirenom(a)cnag.crg.eu <mailto:martirenom@cnag.crg.eu> · martirenom(a)gmail.com <mailto:martirenom@gmail.com> > Web: http://marciuslab.org <http://marciuslab.org/> · http://cnag.crg.eu <http://cnag.crg.eu/> · http://crg.cat <http://crg.cat/> > > *** Consider the environment. Print responsibly. *** > > > > > >

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host This lecture will NOT be recorded as unpublished data will be shared. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/15/21 BBC Seminar with Lisa Jones, PhD
by Flowers, Nicole 09 Apr '21

09 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Lisa Jones, Ph.D. University of Maryland In-Cell Protein Footprinting Coupled with Mass Spectrometry for Proteome-Wide Structural Biology April 15, 2021 S. Naing & S. Thompson, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/1/21 BBC Seminar with Eugene Valkov, PhD
by Flowers, Nicole 29 Mar '21

29 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Eugene Valkov, Ph.D. NIH Biochemical Studies of Messenger RNA Degradation April 1, 2021 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Fwd: Post-doc opportunity: Machine learning for biology (Biancalani lab)
by Michael Keiser 15 Mar '21

15 Mar '21

---------- Forwarded message --------- From: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Date: Sat, Mar 13, 2021 at 2:08 PM Subject: Post-doc opportunity: Machine learning for biology (Biancalani lab) To: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Hi, I am looking for a postdoc for my lab in Genentech (in the beautiful San Francisco, CA), and I would appreciate it if you could circulate the opening to potentially interested candidates. The position is for four years and includes competitive salary (>$80k gross) and benefits - you can find more details here <https://www.gene.com/careers/university-and-early-career/postdocs>. Broadly speaking, in my lab we leverage AI methods to understand -omic data, with focus on scRNA-seq, *ISH, and spatial transcriptomics. Some topics of interest include identifying cell cell communication mechanisms, revealing spatial co-localization of cell types or gene programs, and predicting the outcome of perturbation assays. We address these topics using modern machine learning methods, such as training a convolutional neural network for extracting features from images, learning a latent representation for harmonizing different data modalities, using gradient boosting to forecast biological responses from medical records and so forth. My lab is within Research Biology in Genentech which is *very* academic-like. Our environment is ideal either for landing an academic professorship or an industry job. I would be delighted to provide more information about how life is in Genentech. The interested candidates can apply here <https://www.gene.com/careers/detail/202102-103783/Postdoctoral-Fellow-Artif…>. Feel free to drop me a message so that I am aware of your application. Ciao, -- *Tommaso Biancalani PhD* *Director and Senior Scientist* AI/ML (Research Biology) Genentech <https://www.gene.com/> | +1-650-608-0381 -- Michael J Keiser, PhD Associate Professor, UCSF Chan Zuckerberg Initiative Ben Barres Investigator Paul G. Allen Frontiers Group Distinguished Investigator Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Kavli Institute for Fundamental Neuroscience Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: Postdoc position available at Institut Pasteur
by Andrej Sali 15 Mar '21

15 Mar '21

Sent from my iPhone Begin forwarded message: > From: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Date: March 15, 2021 at 1:03:08 AM PDT > To: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Subject: Postdoc position available at Institut Pasteur > > Dear friends and colleagues, > > I hope you are all well in these strange times. > > I am writing to you because there is a postdoc position available in my group at Institut Pasteur (Paris, France) starting September 2021. > The position is funded by the French Research Agency (ANR) to work on integrating cryo-EM data in MD simulations for > single-structure and ensemble refinement. If you have talented PhD students (or postdocs) looking for a postdoc, please let them know of this opportunity. > They can contact me directly with any question. More info about this position can be found here: > > https://research.pasteur.fr/en/job/154853/ > > Have a nice day and stay safe, > Max > > --------------------------------------------------------------------------------- > Max Bonomi, Ph.D. HDR > Chargé de Recherche, CNRS UMR 3528 > Group Leader, Institut Pasteur > Department of Structural Biology and Chemistry > 28 rue du Docteur Roux > 75015 Paris, France > phone: +33 (0)1 44 38 93 63 > web: https://research.pasteur.fr/en/member/massimiliano-bonomi/ > email: mbonomi(a)pasteur.fr > twitter: https://twitter.com/BonomiMax >

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[Compbio-allhands] 3/18/21 BBC Seminar with Hunter Fraser, PhD
by Flowers, Nicole 12 Mar '21

12 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Hunter Fraser, Ph.D. Stanford Using hybrids to explore the evolution of complex traits March 18, 2021 N. Ahituv, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Spring 2021 UCSF BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 10 Mar '21

10 Mar '21

Dear all, Please see the attached spring quarter flyer to see what’s in store for the BBC Seminar Series! Note that the zoom link is the same as the one we used for the winter quarter. Thank you! Nicole Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: Lots of new US positions at exscientia
by Brian Shoichet 07 Mar '21

07 Mar '21

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Reid Olsen <reidolsen(a)gmail.com> Date: Sun, Mar 7, 2021, 2:59 AM Subject: Lots of new US positions at exscientia To: Brian Shoichet <bshoichet(a)gmail.com> Hi Dr. Shoichet, I wanted to pass along that we are opening a miami branch focused on chemistry/computational chemistry/machine-learning and AI. While the office is in miami most of the positions could likely accommodate work from home on the east coast time zone. If you know anyone who might be interested, or another person or group to reach out to, please let me know. Hope you guys are doing well, -Reid Reid Olsen Ph.D. Pharmacology +447936861355 (UK) +1-503-896-1186 (USA)

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[Compbio-allhands] 3/11/21 BBC Seminar with Judith Klinman, PhD
by Flowers, Nicole 05 Mar '21

05 Mar '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Judith Klinman, Ph.D. UC Berkeley Emerging Experimental Probes of Reaction Specific Dynamical Networks that Control Enzyme Activation March 11, 2021 S. Dickinson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Fwd: A prestigious postdoctoral fellowship in Singapore for early-career researchers
by Andrej Sali 04 Mar '21

04 Mar '21

> Begin forwarded message: > > From: "Nanyang Technological University $NTU$, Singapore" <ntu(a)sci.scientific-direct.net> > Subject: A prestigious postdoctoral fellowship in Singapore for early-career researchers > Date: March 4, 2021 at 6:32:06 AM PST > To: "A Sali" <sali(a)salilab.org> > Reply-To: "Talent Recruitment and Career Support Office, NTU, Singapore" <ntuppf(a)ntu.edu.sg> > > <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/B/~/0> > Online version <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> > > Young and research-intensive, Nanyang Technological University (NTU Singapore) is ranked 13th globally. It is also placed 1st among the world’s best young universities. NTU has a vibrant research eco-system with a high proportion of early career researchers. It has a healthy environment for interdisciplinary research collaboration and the research is well funded. NTU invites outstanding early-career researchers to apply for appointment as a NTU Presidential Postdoctoral Fellow. > > > > APPLY NOW <https://sci.scientific-direct.net/c/1677209/625329550f36b449/9> > The NTU Presidential Postdoctoral Fellowship, aims to provide the opportunity for outstanding early career researchers from Singapore and around the world, to conduct independent investigations in any discipline at NTU. This Fellowship provides research funding over two years. There is personal development opportunities coupled with mentorship in an established research group. These conditions will empower the Fellows to strive for research excellence and impact and enable them to meet their ambitions as global research leaders. > > PPF BENEFITS > > The Presidential Postdoctoral Fellowship provides: > > A two-year tenure with a salary of SGD 80,000 per year. > A research grant of up to SGD 100,000 per year. > A housing grant of SGD 18,000 per year with eligibility for subsidized apartment accommodation (subject to availability) > Relocation expenses of up to SGD 4,000 (if eligible) > Mentorship and support in an established research group. > Opportunity to work with faculty in mentoring graduate students. > Exposure to the most dynamic and diverse global growth regions. > ELIGIBILITY CRITERIA > > Within 5 years of obtaining Ph.D. or equivalent degree > Demonstrable intellectual excellence. > Maturity and capacity to begin an independent research career. > Desire and potential to develop as a future academic leader. > Submit a thoughtful and realistic research proposal > Be available to take up the position no later than 31 Dec 2021. > HOW TO APPLY > > The application is open from 15 January 2021 to 15 April 2021 (Singapore Time, UTC+8). > > Applications must submitted in electronic format via NTU Online Application Portal <https://sci.scientific-direct.net/c/1677209/625329550f36b449/1>. > > > APPLY NOW <https://sci.scientific-direct.net/c/1677209/625329550f36b449/3> > > Checklist > > The following supporting documents have to be attached to the online application form: > > Cover Letter > Comprehensive CV (with full publication list) > Official transcript or Degree Certificate in English (PhD’s degree) > Research proposal (in no more than 2 pages, template for download <https://sci.scientific-direct.net/c/1677209/625329550f36b449/4>) > Contact information of two referees (one must be PhD Supervisor) > Top 3 publications (in PDF) and any other supporting documents (scanned copy) > Interested applicants are advised to have them ready before applying on-line. Late or incomplete applications will not be considered. > > For more information on the Presidential Postdoctoral Fellowship 2021, please visit http://www.ntu.edu.sg/tracs/ppf <https://sci.scientific-direct.net/c/1677209/625329550f36b449/5> > > Queries about the application can be directed to ntuppf(a)ntu.edu.sg <mailto:ntuppf@ntu.edu.sg> > > > If you no longer wish to receive emails from NTU please send an email to ntuppf(a)ntu.edu.sg <mailto:ntuppf@ntu.edu.sg> with the word Unsubscribe in the subject line. > Share: <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/sali@salilab.…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/625329550f36b…> > You have received this e-mail in the genuine belief that its contents would be of interest to you. To not receive these messages from Web of Science Author Connect®, please go to our preference page <https://sci.scientific-direct.net/r/r.asp?1677209&625329550f36b449&H>. Web of Science Author Connect® (also known as Scientific Direct) is a service provided by Clarivate. To access our privacy statement, please click here <https://sci.scientific-direct.net/c/1677209/625329550f36b449/10>. > > > Clarivate > 1500 Spring Garden Street > 4th Fl > Philadelphia, PA 19130 > USA > > <https://sci.scientific-direct.net/c1/1677209/625329550f36b449/E/~/0>

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[Compbio-allhands] 3/4/21 BBC Seminar with David Relman, MD
by Flowers, Nicole 26 Feb '21

26 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK [cid:3f1e4789-f312-4f01-ba7a-5d9297c88bb9] Co-Sponsored by The Gladstone Center for Cell Circuitry David Relman, MD Stanford The response to disturbance in the human microbial ecosystem March 4, 2021 L. Weinberger, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/25/21 BBC Seminar with Kevin Eggan, PhD
by Flowers, Nicole 19 Feb '21

19 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Kevin Eggan, Ph.D. Harvard Deciphering the Molecular Logic of Motor Neuron Degeneration in ALS February 25, 2021 L. Wu, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/18/21 BBC Seminar with Gaudenz Danuser, PhD
by Flowers, Nicole 12 Feb '21

12 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Gaudenz Danuser, Ph.D. UT Southwestern How shape shapes cancer cells February 18, 2021 T. Nagy, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 2/11/21 BBC Seminar with Philip Kranzusch, PhD
by Flowers, Nicole 05 Feb '21

05 Feb '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Philip Kranzusch, Ph.D. Harvard Evolution of antiviral immunity February 11, 2021 R. Tibble, Host This lecture will NOT be recorded as unpublished data will be shared. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Fwd: New Postdoc Fellowship at the Chicago Center for Theoretical Chemistry
by Andrej Sali 04 Feb '21

04 Feb '21

> Begin forwarded message: > > From: "Gregory A. Voth" <gavoth(a)uchicago.edu> > Subject: New Postdoc Fellowship at the Chicago Center for Theoretical Chemistry > Date: February 4, 2021 at 4:57:10 PM PST > To: "Gregory A. Voth" <gavoth(a)uchicago.edu> > > > Dear Colleague, > > We have a prestigious new postdoc fellowship at the CCTCh. The advertisement can be found here: > > https://chemistryjobs.acs.org/job/31039/research-fellowship-in-theoretical-… <https://chemistryjobs.acs.org/job/31039/research-fellowship-in-theoretical-…> > > Please ask the very best people in your group to apply if they are interested. According to the add linked above, the search closes March 5th but this deadline may be extended. > > Best wishes, > Greg Voth > > __________________________________________________________________ > > Gregory A. Voth, Ph.D., FRSC > Haig P. Papazian Distinguished Service Professor, > Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics > Founding Director, Chicago Center for Theoretical Chemistry (CCTCh) > > Department of Chemistry > The University of Chicago > 5735 S. Ellis Avenue > Chicago, Illinois 60637 > Phone: 773-702-9092 > Fax: 773-795-9106 > Administrative Assistant: 773-702-9096 > Email: gavoth(a)uchicago.edu <mailto:gavoth@uchicago.edu> > Group Web Site: vothgroup.uchicago.edu <http://vothgroup.uchicago.edu/> > CCTCh Web Site: https://cctch.uchicago.edu/ <https://cctch.uchicago.edu/> > ___________________________________________________________________

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[Compbio-allhands] OpenEye Scientific
by Grabe, Michael 29 Jan '21

29 Jan '21

Hi everyone, Please see the opportunities from OpenEye below. Best Michael Begin forwarded message: From: Lillian Chong <ltchong42(a)gmail.com<mailto:ltchong42@gmail.com>> Subject: Re: students? Date: January 21, 2021 at 10:12:59 AM PST To: "Grabe, Michael" <Michael.Grabe(a)ucsf.edu<mailto:Michael.Grabe@ucsf.edu>> Hi Michael, I hope you are keeping well. The job listings for OpenEye Scientific can be found here: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.eyesopen.com_caree… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.eyesopen.com_caree…> Senior Scientific Software Developer (MD Specialist) - looking to hire 2 or more for this position Scientific Software Developer (Antibody Modeling) Scientific Software Developer (Molecular Modeling) Scientific Software Developer (Free-Energy Calculations) The computational cryo-EM position is not yet posted, but there is definitely interest in hiring someone in this area. Can you please post to the computational biophysics list at UCSF? Thanks so much! Lillian -- Lillian T. Chong Associate Professor Department of Chemistry University of Pittsburgh 219 Parkman Avenue Pittsburgh, PA 15260 (412) 624-6026

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[Compbio-allhands] 2/4/21 Clements Lecture with Lillian Kenner
by Flowers, Nicole 29 Jan '21

29 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/pUYmCK Biophysics Alumna Lillian Kenner Clements Lecture A Structural View of Translation Initiation using cryo-EM February 4, 2021 A. Frost, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry.

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[Compbio-allhands] 1/28/21 BBC Seminar with Robert Spitale, PhD
by Flowers, Nicole 21 Jan '21

21 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Robert Spitale, Ph.D. UC Irvine Chemical Approaches to Analyzing the Transcriptome January 28, 2021 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/21/21 BBC Seminar with Axel Brunger, PhD
by Flowers, Nicole 15 Jan '21

15 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Axel Brunger, Ph.D. Stanford Molecular Mechanisms of Synaptic Neurotransmitter Release January 21, 2021 R. Edwards, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/14/21 BBC Seminar with Donita Brady, PhD
by Flowers, Nicole 08 Jan '21

08 Jan '21

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Donita Brady, Ph.D. University of Pennsylvania Cellular and Molecular Determinants of Copper Activation of Protein Kinases in Cancer January 14, 2021 N. Jura, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] 1/7/21 BBC Seminar with Florentine Rutaganira, PhD
by Flowers, Nicole 30 Dec '20

30 Dec '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK CCB Alum Florentine Rutaganira, Ph.D. UC Berkeley Chemical Biology in the Closest Living Relatives of Animals January 7, 2021 C. Chio, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC…

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[Compbio-allhands] Winter 2021 UCSF BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 18 Dec '20

18 Dec '20

Dear all, Please see the attached winter quarter flyer to see what’s in store for the BBC Seminar Series! Note that we will be using the same link for the entirety of the quarter. Thank you and Happy Holidays! Nicole -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] Fwd: Vertex Fellows Recruitment (Applications Due Jan 15, 2021)
by Brian Shoichet 13 Dec '20

13 Dec '20

FYI. ---------- Forwarded message --------- From: Georgia McGaughey <georgia_mcgaughey(a)vrtx.com> Date: Sun, Dec 13, 2020 at 3:47 AM Subject: Vertex Fellows Recruitment (Applications Due Jan 15, 2021) To: Brian Shoichet <shoichet(a)cgl.ucsf.edu> Brian, I'm writing to ask for your help as we seek great candidates for the 6th class of the Vertex Fellows program. Our goal in creating the Vertex Fellowship is to attract some of the most talented scientists and physicians to join Vertex for one year of immersive learning about the science of discovering and developing medicines.  Vertex Fellows get to work as part of a project team to create transformative medicines for patients with serious diseases, learn about the variety of functions that contribute to getting these medicines to patients, and receive mentorship from senior leaders. This is a highly competitive program, and our 35 Fellows to date have been fantastic. Each Fellow is assigned both a project mentor and a career mentor, and is embedded within an existing project team based on his or her interests and experience, and our needs.  In addition, Fellows receive a week of intensive didactic training on the science of drug discovery and the business of creating medicines, as well as ongoing group training throughout the year.  The program is intentionally short (one year) so it augments rather than replaces a traditional postdoc or medical training.   Fellows are placed at one of our Research sites starting in September 2021.  We provide career advice and mentorship to help the Fellows as they consider their next step, potentially including open positions at Vertex, toward the end of the program. I am asking for your help with identifying stellar applicants for this opportunity. *Do you know anyone who might be a good fit?  Applications are due by January 15, 2021.  More information and a link to apply can be found on our website:* https://www.vrtx.com/we-are-vertex/innovation-programs I'm also attaching a 1-page flyer with more information.  I’d be particularly grateful if you would pass this along to any students or postdocs whom you think might be interested.  Please do let me know what questions or feedback you have about the program. Thanks for your help, Georgia This email message and any attachments are confidential and intended for use by the addressee(s) only. If you are not the intended recipient, please notify me immediately by replying to this message, and destroy all copies of this message and any attachments. Thank you. -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 12/17/20 Seminar with Sarah Loerch
by Flowers, Nicole 04 Dec '20

04 Dec '20

Seminar with Dr. Sarah Loerch UC Santa Cruz Structural basis of P-body regulation in sensory neurons Stephen Floor, Host December 17, 2020 Noon http://tiny.ucsf.edu/LoerchSeminar<http://tiny.ucsf.edu/LoerchSeminar> Flyer attached -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] 12/10/20 BBC Seminar with Aviv Regev
by Flowers, Nicole 03 Dec '20

03 Dec '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Aviv Regev, Ph.D. Genentech Co-Sponsored by the Helen Diller Cancer Center: Cell Atlases as Roadmaps to Understand Genes and Treat Disease December 10, 2020 B. Zaro, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] 12/3/20 BBC Seminar with Laura Kiessling, PhD
by Flowers, Nicole 30 Nov '20

30 Nov '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/pUYmCK Laura Kiessling, Ph.D. MIT Carbohydrates as Cellular IDs December 3, 2020 D. Schwarz & J. Braxton, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94116 P: 415.502.6518

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[Compbio-allhands] Fwd: open position in Gilead's modeling group
by Jacobson, Matt 21 Nov '20

21 Nov '20

— Matt Begin forwarded message: From: Vickie Tsui <Vickie.Tsui(a)gilead.com<mailto:Vickie.Tsui@gilead.com>> Subject: open position in Gilead's modeling group Date: November 17, 2020 at 1:03:43 PM PST To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt, It has been a long time since we talked, and I hope you and your family are doing well in spite of the crazy time. I wanted to let you know that our Modeling Group at Gilead has an opening currently. We are a group of 7 modelers (one just left last week – hence the open position), and we work closely with the other two groups (crystallography and informatics) in the Department of Structural Chemistry. We are parallel with the Medicinal Chemistry and Biology departments, and work closely with them on project teams. Modelers are involved from the target conception stage all the way to delivering a development candidate, and also have opportunities to be Core Team members or even to lead a project. Please feel free to pass this information on to your group, or to recommend specific people in your lab. My email isVickie.tsui(a)gilead.com<mailto:Vickie.tsui@gilead.com>, and my number is 650-534-8426. Thank you very much - I hope you take care and stay healthy. Best Regards, Vickie Vickie Tsui, Ph.D. Senior Director, Structural Chemistry Gilead Sciences, Inc. (650)653-9447

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[Compbio-allhands] FW: Reminder: Gustavo Silva seminar at noon today
by Flowers, Nicole 19 Nov '20

19 Nov '20

From: "Floor, Stephen" <Stephen.Floor(a)ucsf.edu> Date: Thursday, November 19, 2020 at 6:17 AM Subject: Reminder: Gustavo Silva seminar at noon today Hi everyone, Quick reminder there's a special seminar from Gustavo Silva from Duke at noon today. His talk is titled "K63 ubiquitin and translation control during oxidative stress”. His CV and the flyer are attached. The talk zoom is at http://tiny.ucsf.edu/SilvaSeminar. Hope you can make it! Best regards, Stephen

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[Compbio-allhands] Fwd: help with recrutiment
by Andrej Sali 16 Nov '20

16 Nov '20

> Dear Andrej > Please find the ad below and many thanks for helping out: > > The A*STAR Bioinformatics Institute in Singapore is a leading esearch institute connecting clinical, biological and cellular omics > data to biomolecular mechanisms through big data analysis and computational method development. We advance science and > develop innovative technology to further economic growth and improve lives. > > We are recruiting internationally recognized new group leaders with experience in biomolecular mechanism discovery through > computational data analysis of clinical, biological or cellular omics data. These could be genomics, transcriptomics, proteomics or > other omics data ideally intersecting with clinical data sets. > > Research areas include metabolic, infectious and neurological diseases including early childhood development. Experience in > applying AI and Machine learning is a plus. > > The applicant is expected to: > > 1. have solid background in Computer Science and Bioinformatics > 2. have shown abilities to combine and integrate data from multiple data sources linking data to molecular mechanisms > 3. be very versatile in understanding concepts in diverse biological fields and have the ability to use domain knowledge > effectively in the design and execution of analyses > 4. have good communication skills and fit in well in teams of very diverse background > 5. have strong publication background and academic track record > > Please contact chandra verma (chandra(a)bii.a-star.edu.sg <mailto:chandra@bii.a-star.edu.sg>) with your CV and have 3-4 letters of reference sent > > chandra >

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[Compbio-allhands] Fwd: Hiring a postdoc in my group
by Jacobson, Matt 15 Nov '20

15 Nov '20

— Matt Begin forwarded message: From: Chia-en Chang <chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu>> Subject: Hiring a postdoc in my group Date: November 12, 2020 at 1:41:26 PM PST To: Chia-En Angelina Chang <chia-en.chang(a)ucr.edu<mailto:chia-en.chang@ucr.edu>> Cc: chiaenc(a)ucr.edu<mailto:chiaenc@ucr.edu> Dear friends, I'm looking for a postdoc to work in the area of ligand and protein binding kinetics and free energy. The position is available immediately and will focus on developing and applying our newly developed Binding Kinetics (BKiT) package to compute unbinding free energy profile to problems in pharmaceutical drug discovery. Ideal candidates are someone with programming experience and expertise with MD and/or other molecular mechanics simulation techniques. Please pass along this link to anyone suitable you might be aware of: https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> Hope all is well and stay safe! Thank you very much, Chia-en -- Chia-en A. Chang, Ph.D. Professor and Vice Chair of Chemistry Cooperating Faculty Member in the Department of Chemical Eng ETOX Program, GGB Program and Biochemistry program UC, Riverside Riverside, CA 92521 Ph:951-827-7263 https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_… <https://urldefense.proofpoint.com/v2/url?u=http-3A__chemcha-2Dgpu0.ucr.edu_…> https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h… <https://urldefense.proofpoint.com/v2/url?u=https-3A__profiles.ucr.edu_app_h…>

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[Compbio-allhands] 11/19/20 Seminar with Gustavo Silva
by Flowers, Nicole 05 Nov '20

05 Nov '20

Seminar with Dr. Gustavo Silva Duke University K63 upbiquitin and translation control during oxidative stress Stephen Floor, Host November 19, 2020 Noon http://tiny.ucsf.edu/silvaseminar Flyer attached -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: computational biology positions in the Pritykin lab at Princeton
by Andrej Sali 04 Nov '20

04 Nov '20

> Begin forwarded message: > > From: Matvei Khoroshkin <khorms21(a)gmail.com> > Subject: Fwd: computational biology positions in the Pritykin lab at Princeton > Date: November 4, 2020 at 6:27:26 PM PST > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > A friend of mine has just started as an Assistant Professor at Princeton and he is looking for people. Is there a chance you could spread the word through Compbio-allhands listserv? > Thank you! > > Best, > Matvei > > ---------- Forwarded message --------- > From: Yury Pritykin <pritykin(a)princeton.edu <mailto:pritykin@princeton.edu>> > Date: Wed, Nov 4, 2020 at 6:13 PM > Subject: computational biology positions in the Pritykin lab at Princeton > To: Matvei Khoroshkin <khorms21(a)gmail.com <mailto:khorms21@gmail.com>> > > > Computational biology positions at multiple levels are available in the Pritykin lab in the Lewis-Sigler Institute for Integrative Genomics and the Computer Science Department at Princeton University. > > The lab is broadly interested in developing computational methods for design and analysis of high-throughput functional genomic assays and perturbations, with a focus on multi-modal single-cell technologies, and applying these methods to study regulatory genomics of cell function and cell-cell interactions in vivo in close collaboration with experimental biologists, with a focus on immunology and cancer. More information is available at https://pritykin.github.io/ <https://pritykin.github.io/> > > Postdoctoral, staff scientist, internship positions are available for highly motivated individuals with strong background in computational biology and other quantitative and computational fields. (Prospective PhD students interested in working in the lab are encouraged to apply for QCB (https://lsi.princeton.edu/qcbgraduate <https://lsi.princeton.edu/qcbgraduate>) and/or COS (https://www.cs.princeton.edu/grad <https://www.cs.princeton.edu/grad>) programs at Princeton.) > > For any questions and additional details about the positions, please contact Yuri Pritykin at pritykin(a)princeton.edu <mailto:pritykin@princeton.edu> > >

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[Compbio-allhands] 11/5/20 BBC Seminar with Pardis Sabeti, PhD
by Flowers, Nicole 23 Oct '20

23 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/aJBL3J Pardis Sabeti, Ph.D. Harvard Outbreak Response in the Genomic Age November 5, 2020 W. Saylor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/22/20 BBC Seminar with Mikhail Shapiro, PhD
by Flowers, Nicole 16 Oct '20

16 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/miFF7x Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function October 22, 2020 J. Witte, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recordings from Fall 2020, please go to this link: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.box.com_v_2020BBC… -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Jnana Therapeutics
by Jacobson, Matt 15 Oct '20

15 Oct '20

Two more job postings for comp chemists, via UCSF alum https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_job-2D… https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_job-2D… — Matt Begin forwarded message: From: Justin Rettenmaier <jrettenmaier(a)jnanatx.com<mailto:jrettenmaier@jnanatx.com>> Subject: Jnana Therapeutics Date: October 13, 2020 at 2:12:57 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, It’s been quite some time since I’ve seen you! I hope you are well and staying safe during these crazy times. One of our last interactions I remember was taking your CADD mini-course. We just had a candidate interview a few weeks ago who was surprised that a “biologist” would have ever heard of free energy perturbations :) After leaving Jim Wells' lab at UCSF, I ended up taking a postdoc position with Sue Lindquist at the Whitehead Institute up until she tragically passed away in late 2016. I was planning to continue my postdoc with Stuart Schreiber, but once I found out about a new company he was forming, I decided to jump in as employee #6. Jnana is focused on identifying small-molecule therapeutics targeting the SLC family of metabolite transporters for a range of therapeutic indications, including inborn errors of metabolism, autoimmune disease, and neurological disease. I co-invented a novel ligand discovery technology here at Jnana that we call RAPID, which was inspired by Ben Cravatt’s work with covalent fragment screening in live cells as well as my experiences with Tethering in Jim’s lab. It would be really fun to tell you a bit about it at some point if you were interested. I am writing to let you know that we have two job openings - one in cheminformatics and another in computational modeling (postings here<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jnanatx.com_join-2…>). I’ve tried and failed miserably in the past to recruit my old friends from the Bay Area to come out to the East Coast! I wonder if you could recommend any brave souls that might want to make the journey. All the best, Justin

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[Compbio-allhands] Fwd: post-doc offer front edge academic/industrial setting
by Andrej Sali 10 Oct '20

10 Oct '20

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: dp devos <damienpdevos(a)gmail.com> > Subject: post-doc offer front edge academic/industrial setting > Date: October 10, 2020 at 3:19:46 AM PDT > To: Francisco Melo <fmelo(a)bio.puc.cl>, Maya Topf <m.topf(a)cryst.bbk.ac.uk>, Christian Jogler <Christian(a)jogler.de>, Ida van der Klei <i.j.van.der.klei(a)rug.nl>, Laura van Niftrik <l.vanniftrik(a)science.ru.nl>, Lucas Nicolás Alberca (vía Google Drive) <lucasalberca(a)gmail.com>, Luciano Marcon <lmarcon(a)upo.es>, Xavier De Bolle <xavier.debolle(a)unamur.be>, Cedric Govaerts <cgovaert(a)ulb.ac.be>, Lista IPs y asociados del CABD <cabd_associates(a)upo.es>, Simonetta Gribaldo <simo(a)pasteur.fr>, celine brochier <celine.brochier-armanet(a)univ-lyon1.fr>, Ricardo Rodriguez de la Vega <ricardo.rodriguezdelavega(a)gmail.com>, lazaro centanin <lazaro.centanin(a)cos.uni-heidelberg.de>, Maximiliano Gutierrez <max.g(a)crick.ac.uk>, Claudia Chica <ensentis(a)gmail.com>, "Mark C. Field" <mfield(a)mac.com>, Emmanuel Reynaud <emmanuel.reynaud(a)ucd.ie>, Marco Carraro <refract(a)ngp-net.bio.unipd.it>, Edu Andrés León <eduardo.andres.leon(a)gmail.com>, Andrey Kajava <andrey.kajava(a)crbm.cnrs.fr>, Silvio C E Tosatto <silvio.tosatto(a)unipd.it>, IDPfun - Diana Battistella <idpfun(a)ngp-net.bio.unipd.it>, Luis Sanchez-Pulido <sanchezpulido(a)gmail.com>, "Andrade, Dr. Miguel" <andrade(a)uni-mainz.de>, "Antonio J. Perez" <ajperez(a)upo.es>, Bruno Contreras Moreira <bcontreras(a)eead.csic.es>, Andrej Sali <sali(a)salilab.org>, "Michael P. Rout" <rout(a)mail.rockefeller.edu>, "Korkin, Dmitry" <dkorkin(a)wpi.edu> > > Dear colleague, > Please spread around this opportunity for realizing a post-doc between my lab and the industry in Seville. > Thanks in advance > d > > > > > Looking forward to applying your academic knowledge in an industrial setting? Here is a great opportunity to work at the front edge of collaboration between university research and commercial application. > > The CABD in collaboration with CITRE, a Bristol-Myers Squibb Company is offering a postdoctoral position on the groundbreaking topic of targeted protein degradation, in the context of an academic-industrial research collaboration. The project involves studying and understanding fundamental aspects of targeted protein degradation, involving molecular glue and heterobifunctional degraders (aka PROTACs) of enormous therapeutic potential. We are looking for a talented scientist with: > • PhD in a relevant discipline, such as structural biology, computational biology, bioinformatics or related fields, accompanied by original research publications. > • Experience in understanding protein structures and sequences from a computational perspective, combined with a strong interest in evolution and fundamental principles. > • Strong expertise in scripting and programming (e.g. R, Python, C++ or others), machine/deep learning and methods development experience is a plus. > • Attention to detail and capacity to communicate technical/scientific concepts clearly and > concisely to audiences of varied backgrounds. > • Verbal and written English language fluency. > > The position will be shared between the CABD and CITRE in Seville, Spain. Please send a short motivation letter, CV and 2 contacts for references to Alejandro Panjkovich and Damien Devos at damienpdevos at gmail.com <http://gmail.com/> and Alejandro.Panjkovich at bms.com <http://bms.com/>. > --- > Damien P. Devos, Cientifico Titular CSIC > Andalusian Center for Developmental Biology (CABD) > Pablo de Olavide University (UPO) > Spanish Science Council (CSIC) > > Latest publication: Origin and evolution of polycyclic triterpene synthesis. Santana-Molina et al., MBE. 2020 > https://doi.org/10.1093/molbev/msaa054 <https://doi.org/10.1093/molbev/msaa054> > > Research highlight: > https://www.csic.es/es/actualidad-del-csic/las-bacterias-podrian-ser-el-ori… <https://www.csic.es/es/actualidad-del-csic/las-bacterias-podrian-ser-el-ori…> > > Direction: > CABD/UPO, > Carretera de Utrera km1, > 41013 Sevilla, Spain > Tel: +34 (0) 954977930 > Fax: +34 954349376 > http://cellcollectives.com/dt_doctors/microbiologys-platypus/ <http://cellcollectives.com/dt_doctors/microbiologys-platypus/> > http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa… <http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa…> > > ORCID: orcid.org/0000-0002-9453-4753 <http://orcid.org/0000-0002-9453-4753> > Scopus author ID: 7004062844 > https://www.scopus.com/authid/detail.uri?authorId=7004062844 <https://www.scopus.com/authid/detail.uri?authorId=7004062844> > Twitter: @pvcbacteria > > PVC bacteria: > http://www.pvcbacteria.org <http://www.pvcbacteria.org/> > > Next conference: > PVC meeting, Bergen, NO 2021 > > "Education is the most powerful weapon which you can use to change the world." > Nelson R. Mandela (1918-2013) >

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[Compbio-allhands] 10/8/20 BBC Seminar with Cole Trapnell, PhD
by Flowers, Nicole 08 Oct '20

08 Oct '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/XsDVET Cole Trapnell, Ph.D. University of Washington Embryo scale single-cell spatial transcriptomics October 8, 2020 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this URL to view the calendar in iCal.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/15/20 Seminar with Nicholas Ball, PhD, Noon
by Flowers, Nicole 07 Oct '20

07 Oct '20

Seminar with Nicholas D. Ball, PhD Pomona College Synthetic strategies toward fluorosulfurylation of organic molecules & sulfer-fluoride exhange (SUFEX) Thursday, October 15, 2020 Noon Danica Galonic Fujimori, Host 415.514.0147 danica.fujimori(a)ucsf.edu<mailto:danica.fujimori@ucsf.edu> https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_9995012… <https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_9995012… > Meeting ID: 999 5012 2338 Password: 590025 -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Invitation | Sir Ernst Chain Lecture 2020 | 4 November 2020: Enzymes, evolution and disease: 50 years of Bioinformatics Prof Dame Janet Thornton
by Andrej Sali 07 Oct '20

07 Oct '20

> Begin forwarded message: > > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Subject: FW: Invitation | Sir Ernst Chain Lecture 2020 | 4 November 2020: Enzymes, evolution and disease: 50 years of Bioinformatics Prof Dame Janet Thornton > Date: October 7, 2020 at 9:48:31 AM PDT > > > Dear Colleague > > You may wish to attend and/or advertise to your colleagues this virtual talk. > > Best > > Mike > --------------------------------------- > > > > > The honour of your company is requested at the Sir Ernst Chain Lecture 2020: > > Enzymes, Evolution and Disease: 50 years of bioinformatics > Professor Dame Janet Thornton, FRS, FMedSci, EMBL-EBI > > Date: Wednesday 4 November 2020 > Time: 17:00 – 18:30 GMT > Venue: Microsoft Teams Live Event > > The lecture is free to attend and open to all, but registration is required in advance. > Register to attend on Eventbrite <https://www.eventbrite.co.uk/e/sir-ernst-chain-lecture-2020-enzymes-evoluti…> > The link to join the event will be circulated in the joining instructions > > Abstract > The last 50 years have seen bioinformatics evolve from a relatively minor pursuit into one of the major areas of biological research today. This has been driven by the DNA sequencing revolution and the rise of structural biology, which was only just beginning 50 years ago. Some of the first protein structures were of enzymes and were determined in Oxford – a prelude to understanding how they functioned as catalysts and performed their biological function. Today we have garnered data on almost 1000 enzymes, whose structures and functions are known, to improve our understanding of biocatalysis. One surprising finding has been that most enzymes have evolved from other ‘older’ enzymes, by slight modification of the binding sites or occasionally the catalytic mechanism. Another is that many diseases occur because of single amino acids variants which affect enzyme function. Even ageing can be modulated by single variants. These variants are gradually being identified and understood in terms of their effects on health, diseases and ageing. > > Despite all these data, biology remains in a ‘discovery phase’, where there are many many basic facts we still do not know or do not understand about how living organisms work. However, in parallel we now see an increasing push to exploit this flood of data to improve the world we live in. Bioinformatics provides the glue and the analytical approaches to develop quantitative models of life, which in the clinic can potentially help in diagnosis, prognosis and even sometimes identify a therapy. It is clear that the next 50 years will see the emergence of robust mathematical models to characterize living processes and make predictions. The relatively recent emergence of machine learning and synthetic biology have further fuelled the possibilities to harness all this molecular data for the benefit of society – addressing some of our major societal issues like infectious diseases, antimicrobial resistance and designing green waste disposal. > > The lecture will highlight the contributions of bioinformatics over the last 50 years and provide a glimpse of future opportunities. > > Biography > Janet Thornton is a Senior Scientist at the European Molecular Biology Laboratory’s European Bioinformatics Institute (EMBL-EBI) on the Wellcome Genome Campus at Hinxton, near Cambridge, UK. She was Director of the Institute from 2001-2015. > > She studied for her PhD at the National Institute for Medical Research at Mill Hill after graduating as a physicist. After a post-doc in Oxford, Janet moved to London (Birkbeck and later UCL) before becoming Director at EMBL-EBI. Janet’s research is focused on proteins, especially their structure, function and evolution. She is a computational biologist, working at the interface of biology with physics, chemistry, and computing. This includes a detailed analysis of enzyme biocatalysts, their mechanisms and the evolution of new functions. Her group is also investigating the molecular basis of ageing. She has published more than 500 scientific papers, was elected to the Royal Society in 1999 and is a Foreign Associate of US National Academy of Sciences. In 2012 she became a Dame Commander of the Order of the British Empire for services to bioinformatics. > > Please note that Imperial College London processes your personal data in line with the Advancement Privacy Notice. <http://www.imperial.ac.uk/advancement/about-us/advancement-policies/privacy…> If you have any questions or concerns about this, please contact events(a)imperial.ac.uk <mailto:events@imperial.ac.uk>

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[Compbio-allhands] 9/24/20 BBC Seminar with Allison Williams, PhD
by Flowers, Nicole 28 Sep '20

28 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nhyH2x Allison Williams, Ph.D. UCSF Kickoff Lecture: Unravelling the mechanism of activation of the bacterial stress signaling platform September 24, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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Re: [Compbio-allhands] 10/1/20 BBC Seminar with Margaret Gardel, PhD
by Flowers, Nicole 25 Sep '20

25 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nORVLJ Margaret Gardel, Ph.D. University of Chicago Cytoskeletal Mechanosensing by LIM domains October 1, 2020 D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/1/20 BBC Seminar with Margaret Gardel, PhD
by Flowers, Nicole 25 Sep '20

25 Sep '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: http://tiny.ucsf.edu/nORVLJ Margaret Gardel, Ph.D. University of Chicago Cytoskeletal Mechanosensing by LIM domains October 1, 2020 D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > Use this address to access this calendar from other applications.<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.google.com_ca… > -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Program Officer Position at CPP Branch NIDA NIH
by Brian Shoichet 22 Sep '20

22 Sep '20

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: Ananthan, Sam (NIH/NIDA) [E] <sam.ananthan(a)nih.gov> Date: Tue, Sep 22, 2020, 7:26 PM Subject: Program Officer Position at CPP Branch NIDA NIH To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Dear Dr. Shoichet, I recently joined NIDA and am writing to request your help. We have an opening for a Program Officer position in the Chemistry, Pharmacology, and Physiology Branch of NIDA/NIH. I would appreciate it very much if you could inform people from your group/organization who might be interested in applying for the position. The application deadline is September 30. The following is the link: https://www.usajobs.gov/GetJob/ViewDetails/578944200 Thanks. With best regards, Sam *Sam Ananthan, Ph.D.* *Chief, Chemistry and Pharmacology Branch* *Division of Neuroscience and Behavior* *National Institute on Drug Abuse* *National Institutes of Health* *North Bethesda, MD 20852* *Phone: 301-435-2199* *Cell: 301-204-2889* *Email: sam.ananthan(a)nih.gov <sam.ananthan(a)nih.gov>*

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[Compbio-allhands] Fwd: [3dem] Data curation post for EMDB and EMPIAR
by Andrej Sali 17 Sep '20

17 Sep '20

> Begin forwarded message: > > From: Ardan Patwardhan <ardan(a)ebi.ac.uk> > Subject: [3dem] Data curation post for EMDB and EMPIAR > Date: September 17, 2020 at 1:20:30 AM PDT > To: 3dem(a)ncmir.ucsd.edu > > Dear all > > We have a post opening at EMBL-EBI, Hinxton UK to work on EMDB and EMPIAR data curation at a very exciting time when the archives are expanding rapidly both in volume and richness of content: https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01684&newlang=1&pos%5B… <https://urldefense.com/v3/__https://www.embl.de/jobs/searchjobs/index.php?r…> > > Many thanks and best wishes > > Ardan > > Ardan Patwardhan > Team Leader - Cellular Structure & 3D Bioimaging > EMDB & EMPIAR > European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory > Wellcome Trust Genome Campus > Hinxton, Cambridge CB10 1SD > _______________________________________________ > 3dem mailing list > 3dem(a)ncmir.ucsd.edu > https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem

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[Compbio-allhands] Fwd: junior position in theoretical structural biology
by Andrej Sali 09 Sep '20

09 Sep '20

> Begin forwarded message: > > From: Juri Rappsilber <Juri.Rappsilber(a)TU-Berlin.de> > Subject: junior position in theoretical structural biology > Date: September 9, 2020 at 6:56:35 AM PDT > To: "Rappsilber, Juri" <juri.rappsilber(a)tu-berlin.de> > > Hi * > > TU Berlin is looking for a junior group leader in theoretical structural biology. Deadline is extended to end of the month. If you know any candidates, please, let them know. Please also post in networks. > > All the best, > > Juri >

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[Compbio-allhands] Fwd: Foghorn Therapeutics is looking to hire a Computational Chemist
by Jacobson, Matt 27 Aug '20

27 Aug '20

Another job opening — Matt Begin forwarded message: From: Tori Caldwell <tcaldwell(a)foghorntx.com<mailto:tcaldwell@foghorntx.com>> Subject: Foghorn Therapeutics is looking to hire a Computational Chemist Date: August 26, 2020 at 8:27:21 AM PDT To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt, I am working with Johannes Voigt, one of our hiring managers, who is looking to hire a Computational Chemist – from Scientist to Principal Scientist level (ligand design and data analysis, not machine learning). We are fine with hiring someone junior. As a well-known leader in this space, I wanted to ask if you happen to know anyone who may be looking or have any suggestions on where I can find them or post the opening. We would really appreciate any and all help. Here is a link to the job - https://urldefense.proofpoint.com/v2/url?u=https-3A__foghorntx.com_careers_… <https://urldefense.proofpoint.com/v2/url?u=https-3A__foghorntx.com_careers_…> Thank you in advance for your time. Best, Tori Tori Caldwell| Director, Talent Acquisition and Culture tcaldwell(a)foghorntx.com<mailto:tcaldwell@foghorntx.com> Mobile: 617.949.5500 100 Binney Street, Suite 610 | Cambridge, MA 02142 [cid:image001.png@01D67B96.21BA32D0]

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[Compbio-allhands] Fall 2020 BBC Seminar Series Quarterly Flyer
by Flowers, Nicole 27 Aug '20

27 Aug '20

Dear all, In lieu of the ability to post and view seminar notices around the building this year, please find the Fall 2020 BBC Seminar Series quarterly flyer attached to this message. Seminar notices will also be coming out via email, weekly. The full calendar for the academic year can be viewed here: https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series Thank you! Nicole BBC Seminar Series Thursdays, Zoom link sent weekly Academic Year 2021 Date Speaker Topic Host 9/24/20 Allison Williams, UCSF TBD James Fraser 10/1/20 Margaret Gardel, University of Chicago Cytoskeletal Mechanosensing by LIM domains Dyche Mullins 10/8/20 Cole Trapnell, University of Washington TBD Sourav Bandyopadhyay 10/22/20 Mikhail Shapiro, CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function Aashish Manglik 11/5/20 Pardis Sabeti, Harvard Outbreak Response in the Genomic Age Wren Saylor 12/3/20 Laura Kiessling, MIT Carbohydrates as Cellular IDs J. Braxton, D. Schwarz 12/10/20 Aviv Regev, Genentech Co-Sponsored with the Helen Diller Cancer Center: TBD Balyn Zaro -- Nicole Takesono Flowers she/her/hers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: postdoc at Lilly
by Andrej Sali 25 Aug '20

25 Aug '20

> Begin forwarded message: > > From: YAN Lisa <Lisa.YAN(a)3ds.com> > Subject: postdoc at Lilly > Date: August 25, 2020 at 12:43:04 PM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > I have a customer at Lilly looking for a postdoc: > https://www.linkedin.com/jobs/view/1987007171/ <https://www.linkedin.com/jobs/view/1987007171/> > > if you have any graduates who would be interested, could you please let them contact me? Also, would appreciate if you could pass on to others who might be interested. > > Thanks, > > Lisa > This email and any attachments are intended solely for the use of the individual or entity to whom it is addressed and may be confidential and/or privileged. > If you are not one of the named recipients or have received this email in error, > (i) you should not read, disclose, or copy it, > (ii) please notify sender of your receipt by reply email and delete this email and all attachments, > (iii) Dassault Systèmes does not accept or assume any liability or responsibility for any use of or reliance on this email. > > Please be informed that your personal data are processed according to our data privacy policy as described on our website. Should you have any questions related to personal data protection, please contact 3DS Data Protection Officer at 3DS.compliance-privacy(a)3ds.com <mailto:3DS.compliance-privacy@3ds.com> > > For other languages, go to https://www.3ds.com/terms/email-disclaimer <https://www.3ds.com/terms/email-disclaimer>

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[Compbio-allhands] Fwd: EMBL Cell Biology & Biophysics Group Leader recruitment 2020
by Andrej Sali 25 Aug '20

25 Aug '20

> Begin forwarded message: > > From: Jan Ellenberg <jan.ellenberg(a)embl.de> > Subject: EMBL Cell Biology & Biophysics Group Leader recruitment 2020 > Date: August 25, 2020 at 5:01:56 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > I would like to draw your attention to the opening for two group leader positions in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for two outstanding scientists with a background in biology, physics, chemistry, engineering or mathematics who want to pursue original and interdisciplinary research in cutting-edge molecular cell biology or imaging technology development. > > In the area of cell biology, we would for example also welcome applicants that plan to work in unusual, including marine, model systems, or that take a theoretical approach to model dynamic cell biological processes. In the area of imaging technology, we would for example welcome applicants that develop novel microscopy technologies to probe the molecular or physical structure and function of cells. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. In addition, EMBL is a very inclusive and family friendly institution, including its own excellent day care on campus. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > > Jan > > Jan Ellenberg > Cell Biology and Biophysics Unit > European Molecular Biology Laboratory (EMBL) > Meyerhofstr. 1 > D-69117 Heidelberg > Germany > > T +49-6221-387-8391 > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> > >

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[Compbio-allhands] Fwd: Somebody interested in drugging the undruggable?
by Jacobson, Matt 23 Aug '20

23 Aug '20

Several bay area biotech companies are looking for comp chemists, including the opportunity below — Matt Begin forwarded message: From: Johannes Hermann <johannes.hermann(a)frontiermeds.com<mailto:johannes.hermann@frontiermeds.com>> Subject: Somebody interested in drugging the undruggable? Date: August 21, 2020 at 2:53:51 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, It was good talking to you recently – I was hoping for a favor – perhaps you can circulate the attached JD amongst your people – perhaps someone is looking to make a transition to industry and join an exciting startup? We would really like to work and train a junior comp chemist starting out! Thank you and have a good weekend Johannes ************************** [cid:c464279d-6d49-421d-99a1-495a8d8291da@namprd05.prod.outlook.com] Johannes Hermann, Ph.D. Chief Technology Officer https://urldefense.proofpoint.com/v2/url?u=https-3A__frontiermeds.com_&d=Dw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__frontiermeds.com_&d=Dw…> STATEMENT OF CONFIDENTIALITY: The information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain confidential or privileged information. If you are not the intended recipient, or the person responsible for delivering the e-mail to the intended recipient, be advised you have received this message in error and that any use, dissemination, forwarding, printing, or copying is strictly prohibited. Please notify the sender immediately by email at Johannes.hermann(a)frontiermeds.com<mailto:Johannes.hermann@frontiermeds.com> destroy all copies of this message and any attachments. Thank you.

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[Compbio-allhands] Fwd: Computational Chemist I Opening @ Broad Institute of MIT & Harvard
by Jacobson, Matt 09 Aug '20

09 Aug '20

— Matt Begin forwarded message: From: AJ Campbell <arthurc(a)broadinstitute.org<mailto:arthurc@broadinstitute.org>> Subject: Computational Chemist I Opening @ Broad Institute of MIT & Harvard Date: August 7, 2020 at 8:33:25 AM PDT To: Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu> Cc: Emma Seabrook <eseabroo(a)broadinstitute.org<mailto:eseabroo@broadinstitute.org>> Hi Dr. Jacobson, I hope you're doing well! I wanted to reach out because I am looking to recruit an additional Computational Chemist to join the Center for the Development of Therapeutics (CDoT) CADD group at the Broad Institute and would love to tap your network! This position will play a critical role in supporting medicinal chemistry efforts to advance current therapeutic projects within CDoT through structure-based and ligand-based modeling approaches. Take a look at the exciting pipeline of projects we are working on: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> Here are the links to the job description: https://urldefense.proofpoint.com/v2/url?u=https-3A__broadinstitute.wd1.myw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__broadinstitute.wd1.myw…> Please let me know if you have any recent PhDs or Postdocs in your program that would be interested in this role. I am happy to connect you with our recruiter, Emma Seabrook, to fill in the details - she can be reached at eseabroo(a)broadinstitute.org<mailto:eseabroo@broadinstitute.org> Let me know if you have any questions and many thanks! Best, AJ Working at CDoT<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> - Broad Institute of MIT & Harvard Broadminded Blog: Alisha Caliman cuts across disciplines as a computational chemist<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> CDoT Publications<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.broadinstitute.org…> - CDoT's scientific leadership has an average of 15 years of Drug Discovery career experience and have advanced 32 compounds into the clinic. Together, they lead an organization of 80 research scientists and associates, 60% of whom have doctorates in relevant fields or areas of expertise. Arthur J Campbell, Ph.D. Group Leader, Senior Computational Chemist I _________________________________________ The Broad Institute of MIT and Harvard Center for the Development of Therapeutics Stanley Center for Psychiatric Research 415 Main Street, Cambridge, MA 02142 Tel 1-617-714-7372 Email ArthurC(a)BroadInstitute.org<mailto:ArthurC@BroadInstitute.org> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.BroadInstitute.org&… <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.BroadInstitute.org&…>

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[Compbio-allhands] Fwd: Update - EMBO Workshop: In situ Structural Biology - From Cryo-EM to Integrative Modelling
by Andrej Sali 28 Jul '20

28 Jul '20

> Begin forwarded message: > > From: "Tim Nuernberger" <tim.nuernberger(a)embl.de> > Subject: RE: Update - EMBO Workshop: In situ Structural Biology - From Cryo-EM to Integrative Modelling > Date: July 28, 2020 at 12:40:21 AM PDT > To: "'Andrej Sali'" <sali(a)salilab.org> > > Hi Andrej, > > We have now drafted a preliminary programme for the virtual conference which is available here: > https://www.embl.de/training/events/2020/ISS20-01/programme/index.html <https://www.embl.de/training/events/2020/ISS20-01/programme/index.html> > > Moreover please find attached an updated holding slide. Thanks for passing it on to your contacts which might be interested to join our virtual meeting as well. > > We have just re-opened registration and have already 74 registrations for it. > > Thanks a lot. > > Best wishes > Tim > >

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[Compbio-allhands] Fwd: Open University Professorship at the Max Perutz Labs, Vienna
by Andrej Sali 20 Jul '20

20 Jul '20

> Begin forwarded message: > > From: <deans-office(a)mfpl.ac.at> > Subject: Open University Professorship at the Max Perutz Labs, Vienna > Date: July 20, 2020 at 2:13:31 PM PDT > To: <sali(a)salilab.org> > Cc: "Alwin Koehler" <alwin.koehler(a)univie.ac.at>, "'Sascha Martens'" <sascha.martens(a)univie.ac.at> > > Dear Dr. Sali, > Please find attached a letter regarding an open call for a University Professorship of “Advanced Microscopy and Cellular Dynamics” at the Max Perutz Labs in Vienna. > We think that this an exciting opportunity and would greatly appreciate if you could inform qualified candidates from your laboratory or institute about this position. > Kind Regards, > Alwin Köhler & Sascha Martens >

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[Compbio-allhands] Fwd: Structural Biology Postdoctoral Fellow
by Andrej Sali 06 Jul '20

06 Jul '20

> Begin forwarded message: > > From: "Fesik, Stephen" <stephen.fesik(a)Vanderbilt.Edu> > Subject: Structural Biology Postdoctoral Fellow > Date: July 6, 2020 at 10:29:42 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > Thank you for forwarding my email last year to your student and postdoc email list at UCSF. I am looking for talented postdocs again and would greatly appreciate your help. > > I am writing to ask your assistance in identifying talented and highly accomplished structural biologists with a desire to join our group as a postdoctoral fellow. > > As you know, my lab is a multidisciplinary team, comprised of structural biologists, medicinal chemists, and cell biologists, committed to discovering and developing novel therapeutics for the treatment of cancer. We use fragment-based methods and structure-based design to discover small molecule inhibitors for highly validated oncology targets such as K-Ras, Mcl-1, and WDR5 (Please see: https://lab.vanderbilt.edu/fesik-lab/ <https://lab.vanderbilt.edu/fesik-lab/>). > > Postdocs in our group will have the opportunity to learn and apply cutting edge fragment-based methods and structure-based approaches to design analogs of hit molecules to improve binding affinities. The close collaborations between synthetic chemists, cancer biologists, and structural biologists in our group will provide excellent training in drug discovery in a team environment. > > The ideal candidate will have a Ph.D. in NMR or X-ray crystallography with experience in the cloning and purification of proteins for structure determination. If you have a student that fits these criteria, please have them provide a cover letter describing their relevant experience, a curriculum vitae, and a short research summary of their work to stephen.fesik(a)vanderbilt.edu <mailto:stephen.fesik@vanderbilt.edu>. > > If you know of a colleague that may have an interested student, please feel free to forward this contact info to them as well. > > Sincerely, > Steve > > Stephen W. Fesik, Ph.D. > Professor of Biochemistry, Pharmacology, and Chemistry > Orrin H. Ingram, II Chair in Cancer Research > Vanderbilt University School of Medicine > 2215 Garland Ave, 607 Light Hall > Nashville, TN 37232-0146 > > Office: 634 RRB > Phone: (615) 322-6303 > Fax: (615) 875-3236 > Email: stephen.fesik(a)vanderbilt.edu <mailto:stephen.fesik@vanderbilt.edu> > Website: Fesik Lab <http://www.mc.vanderbilt.edu/fesiklab> > > >

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[Compbio-allhands] Fwd: Open position in my lab
by Andrej Sali 07 Jun '20

07 Jun '20

> Begin forwarded message: > > From: "Brock, Oliver" <oliver.brock(a)tu-berlin.de> > Subject: Open position in my lab > Date: June 7, 2020 at 10:52:07 AM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Andrej, > > I hope you and the people close to you are well in these complicated times! > > I am one of Juri Rappsilber's collaborators. In the middle of these crises, I am attempting to fill a position in my lab for a computational biology PhD student with five years of funding. I would greatly appreciate if you could pass along this information to interested parties. I am including brief instructions on how to apply below. > > Thanks for your help! > > Best regards, > Oliver > > ------------- > > Link to the official job ad: > https://tub.stellenticket.de/de/offers/80437/?ids=t281 > > If you are interested in applying: Please email your application as a single PDF file to robotics(a)robotics.tu-berlin.de, specifying IV-302/20 in the subject line. In the PDF file, please include a cover letter explaining your motivation and relevant qualifications, CV, selected publications and/or MS thesis, references, transcripts, and degree certificates. >

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[Compbio-allhands] 5/7/2020 BBC Seminar with Polly Fordyce, PhD
by Flowers, Nicole 29 Apr '20

29 Apr '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_1992348… Password: 266055 Polly Fordyce, Ph.D. Stanford Leveraging microfluidics for high-throughput biophysics, biochemistry, and single-cell biology May 7, 2020 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Tenure-Track Faculty Position at the University of Zurich
by Andrej Sali 01 Apr '20

01 Apr '20

fyi > Begin forwarded message: > > From: "Ben Schuler" <schuler(a)bioc.uzh.ch> > Subject: Tenure-Track Faculty Position at the University of Zurich > Date: April 1, 2020 at 1:25:06 PM PDT > To: Ben <schuler(a)bioc.uzh.ch> > > > Dear Friends and Colleagues, > > Thank you for spreading the word about the tenure-track assistant professor position at our department at the University of Zurich (https://www.nature.com/naturecareers/job/tenuretrack-assistant-professor-in…) Since the question has come up recently, I would like to confirm that the hiring process will continue as planned in spite of the current situation, with a deadline of April 20. I would be grateful if you could pass on this information to potential candidates. > > Thank you very much and best wishes, > > Ben > > > > ____________________________________________________ > > Ben Schuler, PhD > Professor of Molecular Biophysics > Chair, Department of Biochemistry > University of Zurich > > Winterthurerstr. 190, 8057 Zurich, Switzerland > Tel: +41 44 635 5535, Fax: +41 44 635 5907 > Web: http://www.bioc.uzh.ch/schuler > Email: schuler(a)bioc.uzh.ch

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[Compbio-allhands] Fwd: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19
by Andrej Sali 22 Mar '20

22 Mar '20

fyi > Begin forwarded message: > > From: "Guglielmo, B Joseph" <BJoseph.Guglielmo(a)ucsf.edu> > Subject: Fwd: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 > Date: March 22, 2020 at 6:52:10 PM PDT > To: "SALI, ANDREJ" <sali(a)salilab.org>, "Krogan, Nevan" <Nevan.Krogan(a)ucsf.edu>, Matthew Jacobson <matthewpjacobson(a)gmail.com>, "Desai, Tejal" <Tejal.Desai(a)ucsf.edu> > > > > Sent from my iPad > > Begin forwarded message: > >> From: "Kiser, Gretchen" <Gretchen.Kiser(a)ucsf.edu> >> Date: March 22, 2020 at 6:38:33 PM PDT >> To: "FUNDING_OPPS(a)LISTSRV.UCSF.EDU" <FUNDING_OPPS(a)LISTSRV.UCSF.EDU> >> Subject: URGENT: White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 >> Reply-To: "Kiser, Gretchen" <Gretchen.Kiser(a)UCSF.EDU> >> >> >> >> >> THE WHITE HOUSE >> Office of Science and Technology Policy >> >> FOR IMMEDIATE RELEASE >> March 22, 2020 >> >> White House Announces New Partnership to Unleash U.S. Supercomputing Resources to Fight COVID-19 >> >> Today, The White House announced the launch of the COVID-19 High Performance Computing Consortium <https://urldefense.proofpoint.com/v2/url?u=http-3A__covid19-2Dhpc-2Dconsort…> to provide COVID-19 researchers worldwide with access to the world’s most powerful high performance computing resources that can significantly advance the pace of scientific discovery in the fight to stop the virus. >> >> This unique public-private consortium, spearheaded by The White House Office of Science and Technology Policy, IBM, the U.S. Department of Energy, and the National Science Foundation, includes the following government, industry, and academic leaders who have volunteered free compute time and resources on their machines: >> >> Industry >> IBM >> Amazon Web Services >> Google Cloud >> Microsoft >> Hewlett Packard Enterprise >> Academia >> Massachusetts Institute of Technology >> Rensselaer Polytechnic Institute >> U.S. Department of Energy National Laboratories >> Argonne National Laboratory >> Lawrence Livermore National Laboratory >> Los Alamos National Laboratory >> Oak Ridge National Laboratory >> Sandia National Laboratories >> Federal Agencies >> National Science Foundation >> NASA >> >> Researchers are invited to submit COVID-19 related research proposals to the consortium via the online portal <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.xsede.org_covid19-…> which will then be reviewed and matched with computing resources from one of the partner institutions. An expert panel of top scientists and computing researchers will work with proposers to quickly assess the public health benefit of the work and coordinate the allocation of the group’s powerful computing assets. >> >> The COVID-19 High Performance Computing Consortium currently pools 16 systems that together offer over 330 petaflops of supercomputing capacity. Additional capacity, including cloud computing resources, will be added through present and future partners. >> >> The sophisticated computing systems available through this Consortium can process massive numbers of calculations related to bioinformatics, epidemiology, molecular modeling, and healthcare system response, helping scientists develop answers to complex scientific questions about COVID-19 in hours or days versus weeks or months. >> >> “America is coming together to fight COVID-19, and that means unleashing the full capacity of our world-class supercomputers to rapidly advance scientific research for treatments and a vaccine. We thank the private sector and academic leaders who are joining the federal government as part of the Trump Administration’s whole-of-America response,” said Michael Kratsios, U.S. Chief Technology Officer. >> >> FEDERAL AGENCY PARTNERS >> >> “Under the Trump Administration, the United States has regained its position as the dominant global force in Supercomputing technology. The Department of Energy is home to the world’s fastest and most powerful supercomputers, and we are excited to partner with leaders across the scientific community who will use our world class innovation and technology to combat COVID-19,” said U.S. Energy Secretary Dan Brouillette. >> >> “The Department of Energy’s National Labs have made profound advancements towards combatting COVID-19,” said U.S. Department of Energy (DOE) Under Secretary for Science Paul Dabbar. “By providing researchers access to world leading technology here in our own backyard, we take an additional leap towards ending this pandemic. We look forward to collaborating with scientists and researchers to bring an end to COVID-19.” >> >> “The National Nuclear Security Administration is eagerly lending its world-class supercomputing resources to combat COVID-19 in collaboration with OSTP and other agencies,” said Lisa E. Gordon-Hagerty, DOE Under Secretary for Nuclear Security and NNSA Administrator. “Ten NNSA supercomputers will be available, empowering researchers to understand the COVID-19 virus, develop treatments and vaccines, and ultimately bring an end to this pandemic.” >> >> “The National Science Foundation is pleased to join the COVID-19 HPC Consortium to enhance access to the Nation’s leading HPC resources, including the NSF-funded Frontera supercomputer, the world’s most powerful HPC system deployed on an US academic campus,” said France Cordova, Director of the National Science Foundation. “Frontera and other NSF-funded advanced computing resources will enable the Nation’s science and engineering community to pursue data science, computational modeling, and artificial intelligence approaches to help us accelerate our understanding of COVID-19 and strategies for responding to the pandemic.” >> >> “We are pleased to lend NASA’s supercomputing expertise to assist in the global fight against this pandemic. For more than six decades the agency has used its expertise to take on challenges that have benefited people worldwide in unexpected ways,” said Jim Bridenstine, NASA Administrator. >> >> INDUSTRY PARTNERS >> >> “Accelerating the process of discovery to unlock treatments and a cure for COVID-19 is of vital importance to us all. By bringing together the world's most advanced supercomputers and matching them with the best ideas and expertise, this consortium can drive real progress in this global fight. IBM is proud to have helped kick-start this important effort," said Dario Gil, Director of IBM Research. >> >> “We know that high performance computing can reduce the time it takes to process massive data sets and perform complex simulations from days to hours,” said Mike Daniels, Vice President, Global Public Sector at Google Cloud. “We look forward to participating in this initiative alongside leaders in technology, academia, and the public sector to make more resources available to COVID-19 researchers and to apply Google Cloud computing capabilities toward the development of potential treatments and vaccines.” >> >> “We want to make sure researchers working to combat COVID-19 have access to the tools they need. Through our AI for Health program we’ve seen first-hand the impact of empowering talented researchers with powerful technology. We hope that by expanding access to the Azure cloud and High Performance Computing capabilities, and by creating more opportunities to collaborate with our own data scientists, we can help accelerate this important work,” said John Kahan, Microsoft Global Head, AI for Health Program. >> >> “We’re proud to support this critical work and stand ready with the compute power of AWS to help accelerate research and development efforts,” said Teresa Carlson, Vice President, Worldwide Public Sector at AWS. “Working together, government, business, and academic leaders can utilize the power of the cloud to advance the pace of scientific discovery and innovation, and help combat the COVID-19 virus.” >> >> ACADEMIC PARTNERS >> >> “In order to combat the devastating effects of this pandemic, we must be able to fully grasp the complexities and interconnectedness of biological systems and epidemiological data, as researchers work to develop therapeutic interventions and address gaps in our knowledge,” said Rensselaer President Shirley Ann Jackson. “This effort requires expertise, collaboration, and the ability to process incredible amounts of data, and Rensselaer is offering all three at this critical time. In particular, the ability to model at very large scales requires the unique capabilities of AiMOS.” >> >> "Computing and AI have a major role to play in bringing Covid-19 under control," said Christopher Hill, head of MIT’s research computing infrastructure. "We want to do our part by making MIT's two most powerful machines, Satori and TX-GAIA, available to researchers who are racing to understand the virus, model the outbreak, and accelerate drug discovery and design. This will be a team effort, and we hope our actions will inspire others to throw their computing power and brain power at the virus." >> >> >> >> Use this link to unsubscribe <http://listsrv.ucsf.edu/cgi-bin/wa?SUBED1=FUNDING_OPPS&A=1> from this mailing list. >>

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[Compbio-allhands] Fwd: Summer Internship in Computer-Aided Drug Design at Genentech
by Michael Keiser 17 Mar '20

17 Mar '20

FYI ---------- Forwarded message --------- From: Paul Beroza <beroza.paul(a)gene.com> Date: Tue, Mar 17, 2020 at 9:10 AM Subject: Summer Internship in Computer-Aided Drug Design at Genentech To: Paul Beroza <berozap(a)gene.com> I hope this email finds you well, in spite of all the corona-craziness going on. I could use your help. I have a summer intern position I'm trying to fill and am looking for candidates. The position would involve developing methods and workflows for virtual library screening. Brief description here: 2020 Comp Chem Internship at Genentech <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> We are focusing on undergraduates but are considering all student levels. If you could recommend someone or pass the link on to those who might be interested, I'd appreciate it. I need to identify a candidate before the end of the month (yes, this month...), so we need to move quickly. Thanks for the help and best regards! Paul <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> <https://www.gene.com/careers/detail/202002-105348/Intern-Research-and-Early…> -- Paul Beroza, Ph.D. Computational Drug Discovery, Genentech -- Michael J Keiser, PhD Assistant Professor, UCSF Chan Zuckerberg Initiative Ben Barres Investigator Paul G. Allen Frontiers Group Distinguished Investigator Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Kavli Institute for Fundamental Neuroscience Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: FW: Please help us spread the word on the Innovation Fellowship
by Brian Shoichet 12 Mar '20

12 Mar '20

FYI. These postdoctoral fellowships pay well, expose people to a drug discovery environment, and have a good reputation for training. ---------- Forwarded message --------- From: Urban, Laszlo <laszlo.urban(a)novartis.com> Date: Thu, Mar 12, 2020 at 7:39 AM Subject: FW: Please help us spread the word on the Innovation Fellowship To: Brian Shoichet (bshoichet(a)gmail.com) <bshoichet(a)gmail.com>, bryan_roth(a)med.unc.edu <bryan_roth(a)med.unc.edu>, Amanda Chen <axchen(a)mit.edu>, Robert Ietswaart <robertietswaart(a)gmail.com>, Seda Arat <seda8arat(a)gmail.com>, BUMJUN KIM <bumjunebjkim(a)gmail.com>, Saman Farahmand < saman.farahmand001(a)umb.edu> Dear All, I am asking for a favor. We have Innovation Fellow applications open until April 14th in Cambridge, MA and April 24th in Basel and looking for talented people who would consider this opportunity. In case you know people who would be interested, please send them the links below. “The Novartis Innovation Postdoctoral Fellowship offers aspiring drug hunters a unique opportunity to join our teams at the Novartis Institutes for BioMedical Research (NIBR), the innovation engine of Novartis. Mentored by experienced NIBR scientists, Innovation Fellows will gain first-hand experience in the design and development of breakthrough therapies and innovative technologies. We are looking for Innovation Fellows who will harness their scientific creativity and natural curiosity to help bring transformative treatments to patients. Join us as we reimagine medicine together. Program duration: 2-3 years.” Here are a few links: LinkedIn (Cambridge application): https://www.linkedin.com/jobs/search/?currentJobId=1738923966&geoId=1036442… ) LinkedIn (Basel application): https://www.linkedin.com/jobs/search/?geoId=106693272&keywords=novartis%20i… ) Brassring: *Apply - Cambridge* <https://www.novartis.com/careers/career-search/job-details/288900BR> *Apply - Basel* <https://www.novartis.com/careers/career-search/job-details/289991BR> External postdoc program website, which includes details on the program and links to the BrassRing ads: https://www.novartis.com/our-science/postdoc-program/novartis-innovation-po… Thanks in advance for your help! All the best, Laszlo -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] CANCELLED! Re: 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402**
by Flowers, Nicole 06 Mar '20

06 Mar '20

Unfortunately, this talk has been cancelled. We’re hoping to reschedule Dr. Shapiro for a later date. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518 From: "Flowers, Nicole" <Nicole.Flowers(a)ucsf.edu> Date: Friday, March 6, 2020 at 9:01 AM To: "bpstudents(a)listserv.ucsf.edu" <bpstudents(a)listserv.ucsf.edu>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU>, CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU>, "bbcfaculty(a)listserv.ucsf.edu" <bbcfaculty(a)listserv.ucsf.edu> Subject: 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402** BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Mission Hall 1401/1402 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function March 12, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 3/12/2020 BBC Seminar with Mikhail Shapiro, PhD **MH 1401/1402**
by Flowers, Nicole 05 Mar '20

05 Mar '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Mission Hall 1401/1402 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Mikhail Shapiro, Ph.D. CalTech Biomolecular Ultrasound for Non-Invasive Imaging and Control of Cellular Function March 12, 2020 J. Fraser, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 3/5/2020 BBC Seminar with Demet Araç
by Flowers, Nicole 02 Mar '20

02 Mar '20

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Demet Araç, Ph.D. University of Chicago Cellular Communication via Adhesion in the Nervous System October 5, 2020 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Any Ph.D. student looking for a postdoc in CA?
by Brian Shoichet 01 Mar '20

01 Mar '20

FYI. brian ---------- Forwarded message --------- From: Vsevolod Katritch <katritch(a)usc.edu> Date: Sun, Mar 1, 2020 at 5:36 PM Subject: Any Ph.D. student looking for a postdoc in CA? To: shoichet(a)cgl.ucsf.edu <shoichet(a)cgl.ucsf.edu> Dear Brian, How are you doing? May I ask you for a favor? I am looking for a computational postdoc now (see attached), and was wondering if you know any bright PhD student graduating soon and applying for a position? If you do, please send them my way, I know your students are good! BTW, very proud of my alumni postdoc placements last year – two got tenure track faculty positions, one scientist in Genentech, one in Schoedinger… Thank you, Seva -------------------------------------------------- Vsevolod “Seva” Katritch, Ph.D. Asst. Professor of Biological Sciences and Chemistry University of Southern California Dana and David Dornsife College of Letters, Arts and Sciences Michelson Center for Convergent Bioscience The Bridge Institute 1002 West Childs Way, MCB-317 Los Angeles, CA 90089 Tel: 213-821-1488 http://katritch.usc.edu katritch(a)usc.edu -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] Fwd: Two open computational chemistry positions at Genentech
by Jacobson, Matt 28 Feb '20

28 Feb '20

— Matt Begin forwarded message: From: Ben Sellers <sellers.benjamin(a)gene.com<mailto:sellers.benjamin@gene.com>> Subject: Two open computational chemistry positions at Genentech Date: February 26, 2020 at 2:40:21 PM PST To: Matthew Jacobson <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt: I hope you are doing well. I’m writing to inform you that we have two exciting openings in the computational modeling group at Genentech. We’d appreciate your referring any enthusiastic candidates or your forwarding this email to anyone who might be interested. Those interested should start by applying online at the links below. The links also have more detail about the two positions. Computational Chemist This scientist position will use state-of-the-art modeling methods to work with chemists to discover and optimize new drugs for challenging diseases. https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d…> Computational Chemist - Early lead finding This scientist position will also perform modeling but focus primarily on target validation and lead finding, using bioinformatics, cheminformatics, virtual screening, etc. https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d… <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.gene.com_careers_d…> Thank you for your time. -Ben -- Ben Sellers, PhD Senior Scientist Discovery Chemistry Genentech, Inc. sellers.benjamin(a)gene.com<mailto:sellers.benjamin@gene.com>

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[Compbio-allhands] 2/27/2020 Seminar with Barry Honig, PhD **HD 160**
by Flowers, Nicole 26 Feb '20

26 Feb '20

Just a reminder that today’s seminar is in HD 160! BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Helen Diller 160 Livestream: http://tiny.ucsf.edu/WgjNou Zoom: https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.zoom.us_j_8590630… Barry Honig, Ph.D. Columbia University The molecular basis of cell-cell recognition: Cellular patterning and nervous system wiring February 27, 2020 T. Kortemme, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94143 P: 415.502.6518

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