- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Seminar, Jan Ellenberg, “Imaging the assembly of protein complexes and the dynamics of protein networks in dividing human cells”
by Andrej Sali 14 Oct '16

14 Oct '16

Wed, Oct 19, 12-1pm, MH-1406 -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 10/20/16 Seminar with Yong Xiong
by Flowers, Nicole 14 Oct '16

14 Oct '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 (Please note: A lack of attendance in S-161 within the first 10 minutes of the start time will result in a cancellation of the simulcast.) Yong Xiong Yale HIV Capsid Pattern Sensing by the Host October 20, 2016 J. Gross, Host This seminar is sponsored by the HARC Center BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Following up: recruiting postdoc for GROMACS improvements and development
by Jacobson, Matt 12 Oct '16

12 Oct '16

- Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Following up: recruiting postdoc for GROMACS improvements and development Date: October 12, 2016 at 4:18:09 PM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Cc: Peter Kasson <kasson(a)virginia.edu<mailto:kasson@virginia.edu>> Hi, all- Thanks very much for the responses to my previous email. We have hired one postdoc (located at the U. of Virginia) on the NIH-sponsored collaborative project to improve GROMACS robustness and functionality I emailed you about before. However, I am still recruiting one postdoctoral researcher to join my group here at CU Boulder. Perhaps you knew someone for whom this fall was not a good starting time, but January might be; we’d love to hear from them. As discussed before, the work on the Colorado side involves statistical physics to test and diagnose simulation validity, improving the testing framework, and new Monte Carlo methods. Strong software engineering skills are a must, and we would particularly appreciate active members of the molecular simulation development community. As always, members of groups under-represented in the molecular simulation field are especially encouraged to apply. Please refer anyone you think appropriate or have them apply at the link below. The Shirts research group in the Department of Chemical and Biological Engineering is hiring a highly capable research associate to help develop the GROMACS molecular simulation package. GROMACS is an open-source project with a strong international development community as well as a 10,000+ user base. This position is part of a new NIH funded collaborative effort between the Shirts group and the Kasson group (at the University of Virginia) to improve the robustness, functionality, and usability of GROMACS, offering the candidate the opportunity to positively affect the work of thousands of researchers across the globe. Candidates will have the opportunity to learn state-of-the-art simulation methodology and work collaboratively with a global team of developers. This position requires a Ph.D. in Chemistry, Chemical Engineering, Physics, Computer Science or a related field. It requires very strong statistical mechanical, molecular simulation and theoretical skills, as well as significant software engineering experience and ability. Experience in C++ and Python is preferred, as well as experience with version control, code review systems, and team-oriented software development. Competitive candidates will have a track record of scientific success in graduate study with a strong publication record. Apply at https://cu.taleo.net/careersection/2/jobdetail.ftl?job=05979&lang=en&sns_id… ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] 10/13/16 Seminar with Eckhard Jankowsky
by Flowers, Nicole 07 Oct '16

07 Oct '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 (Please note: A lack of attendance in S-161 within the first 10 minutes of the start time will result in a cancellation of the simulcast.) Eckhard Jankowsky Case Western RNA helicases in translation initiation and granule formation. October 13, 2016 J. Gross & D. Weinberg, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 10/6/16 Seminar with Jonathan Gable
by Flowers, Nicole 06 Oct '16

06 Oct '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 (Please note: A lack of attendance in S-161 within the first 10 minutes of the start time will result in a cancellation of the simulcast.) Jonathan Gable Clements Lecture Targeting a Dynamic Protein-Protein Interface to Inhibit a Critical Herpesvirus Enzyme October 6, 2016 D. Agard, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 10/4/16 Seminar with Ruth Ley
by Flowers, Nicole 04 Oct '16

04 Oct '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Tuesday, 12 Noon Genentech Hall Auditorium NO SIMULCAST Ruth Ley Max Planck Institute Tübingen Genetic determinants of the gut micro biome and links to phenotype October 4, 2016 S. Lyalina, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Knapp Seminar (Monday October 3rd 2:30 pm, CVRI 441)
by Grabe, Michael 02 Oct '16

02 Oct '16

Hi everyone, I wanted to remind you of the following lecture tomorrow: Walter Knapp Free University of Berlin Computing pKa values in proteins Smith CVRI Building 4th floor Room 441 Monday October 3rd 2:30 pm Walter’s website can be found here: http://agknapp.chemie.fu-berlin.de/agknapp/ Please share this posting with interested members of your lab. Best Michael PS - I apologize if you get this email twice. ---------------------------------------------------------- Michael Grabe Associate Professor University of California, San Francisco Cardiovascular Research Institute Department of Pharmaceutical Chemistry 555 Mission Bay Blvd South, Room 452T, MC 3122 San Francisco, California 94143 415-502-2874 (office) 415-476-8173 (fax)

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[Compbio-allhands] Seminar in CVRI (Walter Knapp)
by Grabe, Michael 27 Sep '16

27 Sep '16

Hi everyone, Walter Knapp from the Free University of Berlin will be visiting my lab next Monday October 3rd and giving a seminar in CVRI titled: Computing pKa values in proteins Smith CVRI Building 4th floor Room 441 Monday October 3rd 2:30 pm Walter’s website can be found here: http://agknapp.chemie.fu-berlin.de/agknapp/ Please share this posting with anyone that may be interested, and let me know if you want to meet with him during the day. Best Michael l---------------------------------------------------------- Michael Grabe Associate Professor University of California, San Francisco Cardiovascular Research Institute Department of Pharmaceutical Chemistry 555 Mission Bay Blvd South, Room 452T, MC 3122 San Francisco, California 94143 415-502-2874 (office) 415-476-8173 (fax)

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[Compbio-allhands] Fwd: Faculty position openings
by Jacobson, Matt 25 Sep '16

25 Sep '16

Not sure which lists this has gone out to so apologies if it’s a duplicate - Matt Begin forwarded message: From: Talent Project <talents(a)cuhk.edu.cn<mailto:talents@cuhk.edu.cn>> Subject: Faculty position openings Date: September 25, 2016 at 5:25:03 PM PDT To: Talent Project <talents(a)cuhk.edu.cn<mailto:talents@cuhk.edu.cn>> Dear Colleague, We have the pleasure to announce an ambitious hiring plan for faculty members at all ranks in areas of Science and Engineering at The Chinese University of Hong Kong, Shenzhen [CUHK(SZ)]. CUHK(SZ) is a research intensive University executed with the highest international standards and traditions. English is the official language. The University extends the core values and educational philosophy of The Chinese University of Hong Kong, Hong Kong. Operated under a modern and transparent management system that values academic freedom, CUHK(SZ) contributes to higher education by nurturing graduates at all levels with broad international outlook, sound scholarship and commitment to society. Besides education, the University also contributes to the long-term prosperity of Shenzhen and China by its leading work in research and entrepreneurship. The campus (http://www.cuhk.edu.cn/en/index.html) is located in a picturesque area of Shenzhen (http://www.eyeshenzhen.com/, http://v.qq.com/x/page/m0308sptsyb.html) one of the fastest growing communities in the World. The University offers the right candidate an excellent salary package, competitive startup funds and space. The City and Longang Municipal District also offer generous signing bonuses and financial incentives (http://www.cuhk.edu.cn/UploadFiles/TalentsProgramOutline.pdf) While the University welcomes applicants from all areas of expertise, current strengths include Computer Science and Engineering, Electronic Information Engineering, Robotics and Control, New Energy Science and Engineering, Statistics and Data Science, Mathematics and Applied Mathematics, Bioinformatics, Biological Sciences and Biomedical Engineering, Design and Manufacturing Systems, Physics, Chemistry, and Materials Science. A number of multi-million dollar research centers have already been set up. Cluster hiring for the right groups are also considered. The University expects to hire 150 to 200 new faculty in the next five years. By joining us, the person will become a member of one of the best run educational and research institutions in the world. We should be much obliged if you would kindly broadcast this information to those who might be interested in this announcement. For interested individuals, please send CV and/or inquiries to talents4sse(a)cuhk.edu.cn<mailto:talents4sse@cuhk.edu.cn>. Sincerely, S Y Tong (David) Director, President’s Special Unit in Faculty Recruitment The Chinese University of Hong Kong, Shenzhen

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[Compbio-allhands] 9/29/16 Seminar with Jennifer Cochran
by Flowers, Nicole 22 Sep '16

22 Sep '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 (Please note: A lack of attendance in S-161 within the first 10 minutes of the start time will result in a cancellation of the simulcast.) Jennifer Cochran Stanford Engineered Proteins for Visualizing and Treating Cancer September 29, 2016 B. DeGrado, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 9/22/16 Seminar with Grant Jensen- NOTE ROOM
by Flowers, Nicole 22 Sep '16

22 Sep '16

Just a reminder that today’s BBC Seminar will be in Mission Hall 1400. Thank you, Nicole Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546 From: Nicole Flowers <nicole.flowers(a)ucsf.edu<mailto:nicole.flowers@ucsf.edu>> Date: Friday, September 16, 2016 at 9:44 AM To: CCB Student List <CCB_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:CCB_STUDENTS@LISTSRV.UCSF.EDU>>, BMI Students List <BMI_STUDENTS(a)LISTSRV.UCSF.EDU<mailto:BMI_STUDENTS@LISTSRV.UCSF.EDU>>, "bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>" <bpstudents(a)listserv.ucsf.edu<mailto:bpstudents@listserv.ucsf.edu>>, "BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>" <BBCFACULTY(a)LISTSRV.UCSF.EDU<mailto:BBCFACULTY@LISTSRV.UCSF.EDU>> Cc: "Alvarez-Buylla, Arturo" <AlvarezBuyllaA(a)ucsf.edu<mailto:AlvarezBuyllaA@ucsf.edu>>, "abul.abbas(a)ucsf.edu<mailto:abul.abbas@ucsf.edu>" <abul.abbas(a)ucsf.edu<mailto:abul.abbas@ucsf.edu>>, "adam.gazzaley(a)ucsf.edu<mailto:adam.gazzaley@ucsf.edu>" <adam.gazzaley(a)ucsf.edu<mailto:adam.gazzaley@ucsf.edu>>, "allan.basbaum(a)ucsf.edu<mailto:allan.basbaum@ucsf.edu>" <allan.basbaum(a)ucsf.edu<mailto:allan.basbaum@ucsf.edu>>, "Butte, Atul" <Atul.Butte(a)ucsf.edu<mailto:Atul.Butte@ucsf.edu>>, "brian.black(a)ucsf.edu<mailto:brian.black@ucsf.edu>" <brian.black(a)ucsf.edu<mailto:brian.black@ucsf.edu>>, "Hueschen, Christina" <Christina.Hueschen(a)ucsf.edu<mailto:Christina.Hueschen@ucsf.edu>>, "Cunha, Gerald" <gerald.cunha(a)ucsf.edu<mailto:gerald.cunha@ucsf.edu>>, "david.erle(a)ucsf.edu<mailto:david.erle@ucsf.edu>" <david.erle(a)ucsf.edu<mailto:david.erle@ucsf.edu>>, David Morgan <david.morgan(a)ucsf.edu<mailto:david.morgan@ucsf.edu>>, Deanna Kroetz <deanna.kroetz(a)ucsf.edu<mailto:deanna.kroetz@ucsf.edu>>, "edward.goetzl(a)ucsf.edu<mailto:edward.goetzl@ucsf.edu>" <edward.goetzl(a)ucsf.edu<mailto:edward.goetzl@ucsf.edu>>, "Gupta, Nalin" <Nalin.Gupta(a)ucsf.edu<mailto:Nalin.Gupta@ucsf.edu>>, "hal.chapman(a)ucsf.edu<mailto:hal.chapman@ucsf.edu>" <hal.chapman(a)ucsf.edu<mailto:hal.chapman@ucsf.edu>>, "Bourne, Henry" <Henry.Bourne(a)ucsf.edu<mailto:Henry.Bourne@ucsf.edu>>, "jason.cyster(a)ucsf.edu<mailto:jason.cyster@ucsf.edu>" <jason.cyster(a)ucsf.edu<mailto:jason.cyster@ucsf.edu>>, "Chang, Jeremy" <Jeremy.Chang(a)ucsf.edu<mailto:Jeremy.Chang@ucsf.edu>>, "Ye, Chun" <Jimmie.Ye(a)ucsf.edu<mailto:Jimmie.Ye@ucsf.edu>>, Joachim Li <joachim.li(a)ucsf.edu<mailto:joachim.li@ucsf.edu>>, "john.rubenstein(a)ucsf.edu<mailto:john.rubenstein@ucsf.edu>" <john.rubenstein(a)ucsf.edu<mailto:john.rubenstein@ucsf.edu>>, "jon.levine(a)ucsf.edu<mailto:jon.levine@ucsf.edu>" <jon.levine(a)ucsf.edu<mailto:jon.levine@ucsf.edu>>, "Thompson-Peer, Katherine" <Katherine.Thompson-Peer(a)ucsf.edu<mailto:Katherine.Thompson-Peer@ucsf.edu>>, Keith Mostov <keith.mostov(a)ucsf.edu<mailto:keith.mostov@ucsf.edu>>, "Kriegstein, Arnold" <Arnold.Kriegstein(a)ucsf.edu<mailto:Arnold.Kriegstein@ucsf.edu>>, "larry.tecott(a)ucsf.edu<mailto:larry.tecott@ucsf.edu>" <larry.tecott(a)ucsf.edu<mailto:larry.tecott@ucsf.edu>>, "Lowenstein, Daniel" <Lowenstein(a)ucsf.edu<mailto:Lowenstein@ucsf.edu>>, "Lee-Baird, Marissa" <Marissa.Lee-Baird(a)ucsf.edu<mailto:Marissa.Lee-Baird@ucsf.edu>>, "mary.dallman(a)ucsf.edu<mailto:mary.dallman@ucsf.edu>" <mary.dallman(a)ucsf.edu<mailto:mary.dallman@ucsf.edu>>, "mary.elting(a)ucsf.edu<mailto:mary.elting@ucsf.edu>" <mary.elting(a)ucsf.edu<mailto:mary.elting@ucsf.edu>>, "Matija.Peterlin(a)ucsf.edu<mailto:Matija.Peterlin@ucsf.edu>" <Matija.Peterlin(a)ucsf.edu<mailto:Matija.Peterlin@ucsf.edu>>, Melissa Paraiso <Melissa.Paraiso(a)ucsf.edu<mailto:Melissa.Paraiso@ucsf.edu>>, Mike Wilson <Michael.A.Wilson(a)nasa.gov<mailto:Michael.A.Wilson@nasa.gov>>, "michael.lazarus(a)ucsf.edu<mailto:michael.lazarus@ucsf.edu>" <michael.lazarus(a)ucsf.edu<mailto:michael.lazarus@ucsf.edu>>, "millo.pasquini(a)ucsf.edu<mailto:millo.pasquini@ucsf.edu>" <millo.pasquini(a)ucsf.edu<mailto:millo.pasquini@ucsf.edu>>, Noleine Blizzard <Noleine.Blizzard(a)ucsf.edu<mailto:Noleine.Blizzard@ucsf.edu>>, "pao-tien.chuang(a)ucsf.edu<mailto:pao-tien.chuang@ucsf.edu>" <pao-tien.chuang(a)ucsf.edu<mailto:pao-tien.chuang@ucsf.edu>>, Peter Sargent <peter.sargent(a)ucsf.edu<mailto:peter.sargent@ucsf.edu>>, "Philip.Coffino(a)ucsf.edu<mailto:Philip.Coffino@ucsf.edu>" <Philip.Coffino(a)ucsf.edu<mailto:Philip.Coffino@ucsf.edu>>, "Philippe.Gascard(a)ucsf.edu<mailto:Philippe.Gascard@ucsf.edu>" <Philippe.Gascard(a)ucsf.edu<mailto:Philippe.Gascard@ucsf.edu>>, "pui.kwok(a)ucsf.edu<mailto:pui.kwok@ucsf.edu>" <pui.kwok(a)ucsf.edu<mailto:pui.kwok@ucsf.edu>>, Raul Andino <Raul.Andino(a)ucsf.edu<mailto:Raul.Andino@ucsf.edu>>, "rik.derynck(a)ucsf.edu<mailto:rik.derynck@ucsf.edu>" <rik.derynck(a)ucsf.edu<mailto:rik.derynck@ucsf.edu>>, "Nicoll, Roger" <Roger.Nicoll(a)ucsf.edu<mailto:Roger.Nicoll@ucsf.edu>>, "Packman, Seymour" <Seymour.Packman(a)ucsf.edu<mailto:Seymour.Packman@ucsf.edu>>, "Sam.Pleasure(a)ucsf.edu<mailto:Sam.Pleasure@ucsf.edu>" <Sam.Pleasure(a)ucsf.edu<mailto:Sam.Pleasure@ucsf.edu>>, "Scott.Baraban(a)ucsf.edu<mailto:Scott.Baraban@ucsf.edu>" <Scott.Baraban(a)ucsf.edu<mailto:Scott.Baraban@ucsf.edu>>, "Hickey, Scott" <Scott.Hickey(a)ucsf.edu<mailto:Scott.Hickey@ucsf.edu>>, "shaun.coughlin(a)ucsf.edu<mailto:shaun.coughlin@ucsf.edu>" <shaun.coughlin(a)ucsf.edu<mailto:shaun.coughlin@ucsf.edu>>, "Sretavan, David" <David.Sretavan(a)ucsf.edu<mailto:David.Sretavan@ucsf.edu>>, "takashi.mikawa(a)ucsf.edu<mailto:takashi.mikawa@ucsf.edu>" <takashi.mikawa(a)ucsf.edu<mailto:takashi.mikawa@ucsf.edu>>, Thanh Lam <thanh.lam(a)ucsf.edu<mailto:thanh.lam@ucsf.edu>>, "thea.tlsty(a)ucsf.edu<mailto:thea.tlsty@ucsf.edu>" <thea.tlsty(a)ucsf.edu<mailto:thea.tlsty@ucsf.edu>>, "Ullian, Erik" <Erik.Ullian(a)ucsf.edu<mailto:Erik.Ullian@ucsf.edu>>, "Yee, Laura" <Laura.Yee2(a)ucsf.edu<mailto:Laura.Yee2@ucsf.edu>>, "Shen, Yin" <Yin.Shen(a)ucsf.edu<mailto:Yin.Shen@ucsf.edu>>, "ying-hui.fu(a)ucsf.edu<mailto:ying-hui.fu@ucsf.edu>" <ying-hui.fu(a)ucsf.edu<mailto:ying-hui.fu@ucsf.edu>>, "YuhNung.Jan(a)ucsf.edu<mailto:YuhNung.Jan@ucsf.edu>" <YuhNung.Jan(a)ucsf.edu<mailto:YuhNung.Jan@ucsf.edu>>, "Balmain, Allan" <Allan.Balmain(a)ucsf.edu<mailto:Allan.Balmain@ucsf.edu>>, "akreitzer(a)gladstone.ucsf.edu<mailto:akreitzer@gladstone.ucsf.edu>" <akreitzer(a)gladstone.ucsf.edu<mailto:akreitzer@gladstone.ucsf.edu>>, "Albertson, Donna" <Donna.albertson(a)ucsf.edu<mailto:Donna.albertson@ucsf.edu>>, "allhands(a)compbio.ucsf.edu<mailto:allhands@compbio.ucsf.edu>" <allhands(a)compbio.ucsf.edu<mailto:allhands@compbio.ucsf.edu>>, "Weiss, Art" <Art.Weiss(a)ucsf.edu<mailto:Art.Weiss@ucsf.edu>>, "barondes(a)cgl.ucsf.edu<mailto:barondes@cgl.ucsf.edu>" <barondes(a)cgl.ucsf.edu<mailto:barondes@cgl.ucsf.edu>>, "Cheyette, Ben" <bc(a)ucsf.edu<mailto:bc@ucsf.edu>>, "Bhatnagar, Rajendr" <Rajendr.Bhatnagar(a)ucsf.edu<mailto:Rajendr.Bhatnagar@ucsf.edu>>, "bishop(a)cgl.ucsf.edu<mailto:bishop@cgl.ucsf.edu>" <bishop(a)cgl.ucsf.edu<mailto:bishop@cgl.ucsf.edu>>, Jeff Blaney <blaney.jeff(a)gene.com<mailto:blaney.jeff@gene.com>>, "Seaman, William" <William.Seaman(a)ucsf.edu<mailto:William.Seaman@ucsf.edu>>, Robert Chalkley <chalkley(a)cgl.ucsf.edu<mailto:chalkley@cgl.ucsf.edu>>, "charles.ordahl(a)ucsf.edu<mailto:charles.ordahl@ucsf.edu>" <charles.ordahl(a)ucsf.edu<mailto:charles.ordahl@ucsf.edu>>, "chris(a)phy.ucsf.edu<mailto:chris@phy.ucsf.edu>" <chris(a)phy.ucsf.edu<mailto:chris@phy.ucsf.edu>>, "Cleaver, James" <James.Cleaver(a)ucsf.edu<mailto:James.Cleaver@ucsf.edu>>, "clifford.lowell(a)ucsf.edu<mailto:clifford.lowell@ucsf.edu>" <clifford.lowell(a)ucsf.edu<mailto:clifford.lowell@ucsf.edu>>, "cope(a)phy.ucsf.edu<mailto:cope@phy.ucsf.edu>" <cope(a)phy.ucsf.edu<mailto:cope@phy.ucsf.edu>>, "damsky(a)cgl.ucsf.edu<mailto:damsky@cgl.ucsf.edu>" <damsky(a)cgl.ucsf.edu<mailto:damsky@cgl.ucsf.edu>>, "david.wofsy(a)ucsf.edu<mailto:david.wofsy@ucsf.edu>" <david.wofsy(a)ucsf.edu<mailto:david.wofsy@ucsf.edu>>, "Sheppard, Dean" <Dean.Sheppard(a)ucsf.edu<mailto:Dean.Sheppard@ucsf.edu>>, "defranco(a)cgl.ucsf.edu<mailto:defranco@cgl.ucsf.edu>" <defranco(a)cgl.ucsf.edu<mailto:defranco@cgl.ucsf.edu>>, "Hanahan, Doug" <Doug.Hanahan(a)ucsf.edu<mailto:Doug.Hanahan@ucsf.edu>>, "dieter.gruenert(a)ucsf.edu<mailto:dieter.gruenert@ucsf.edu>" <dieter.gruenert(a)ucsf.edu<mailto:dieter.gruenert@ucsf.edu>>, Dirk Bussiere <dirksen.bussiere(a)novartis.com<mailto:dirksen.bussiere@novartis.com>>, "Ron, Dorit" <Dorit.Ron(a)ucsf.edu<mailto:Dorit.Ron@ucsf.edu>>, "dsrivastava(a)gladstone.ucsf.edu<mailto:dsrivastava@gladstone.ucsf.edu>" <dsrivastava(a)gladstone.ucsf.edu<mailto:dsrivastava@gladstone.ucsf.edu>>, Erin Simonds <erin.simonds(a)gmail.com<mailto:erin.simonds@gmail.com>>, "fathi.karouia(a)nasa.gov<mailto:fathi.karouia@nasa.gov>" <fathi.karouia(a)nasa.gov<mailto:fathi.karouia@nasa.gov>>, "Brodsky, Frances" <Frances.Brodsky(a)ucsf.edu<mailto:Frances.Brodsky@ucsf.edu>>, Kati Medzihradszky <folkl(a)cgl.ucsf.edu<mailto:folkl@cgl.ucsf.edu>>, "gail.r.martin(a)ucsf.edu<mailto:gail.r.martin@ucsf.edu>" <gail.r.martin(a)ucsf.edu<mailto:gail.r.martin@ucsf.edu>>, "Davis, Graeme" <Graeme.Davis(a)ucsf.edu<mailto:Graeme.Davis@ucsf.edu>>, "gevan(a)cc.ucsf.edu<mailto:gevan@cc.ucsf.edu>" <gevan(a)cc.ucsf.edu<mailto:gevan@cc.ucsf.edu>>, "Jan , Lily" <Lily.Jan(a)ucsf.edu<mailto:Lily.Jan@ucsf.edu>>, "Guo, Su" <Su.Guo(a)ucsf.edu<mailto:Su.Guo@ucsf.edu>>, Christine Guthrie <guthrie(a)cgl.ucsf.edu<mailto:guthrie@cgl.ucsf.edu>>, "heberleinu(a)janelia.hhmi.org<mailto:heberleinu@janelia.hhmi.org>" <heberleinu(a)janelia.hhmi.org<mailto:heberleinu@janelia.hhmi.org>>, "hjr(a)phy.ucsf.edu<mailto:hjr@phy.ucsf.edu>" <hjr(a)phy.ucsf.edu<mailto:hjr@phy.ucsf.edu>>, "Horton, Jonathan" <Jonathan.Horton(a)ucsf.edu<mailto:Jonathan.Horton@ucsf.edu>>, "hypusine(a)gmail.com<mailto:hypusine@gmail.com>" <hypusine(a)gmail.com<mailto:hypusine@gmail.com>>, "Bluestone, Jeffrey (Private)" <Jeff.Bluestone(a)ucsf.edu<mailto:Jeff.Bluestone@ucsf.edu>>, "Lansman, Jeffry" <jeff.lansman(a)ucsf.edu<mailto:jeff.lansman@ucsf.edu>>, "Engel, Joanne" <Joanne.Engel(a)ucsf.edu<mailto:Joanne.Engel@ucsf.edu>>, "Fike, John" <John.Fike(a)ucsf.edu<mailto:John.Fike@ucsf.edu>>, "Imboden, John" <john.imboden(a)ucsf.edu<mailto:john.imboden@ucsf.edu>>, "jlee111(a)mac.com<mailto:jlee111@mac.com>" <jlee111(a)mac.com<mailto:jlee111@mac.com>>, "johanna.jansen(a)novartis.com<mailto:johanna.jansen@novartis.com>" <johanna.jansen(a)novartis.com<mailto:johanna.jansen@novartis.com>>, J Gray <jwgray(a)lbl.gov<mailto:jwgray@lbl.gov>>, Kim Osborn <kim.osborn(a)gladstone.ucsf.edu<mailto:kim.osborn@gladstone.ucsf.edu>>, "knudsen(a)cgl.ucsf.edu<mailto:knudsen@cgl.ucsf.edu>" <knudsen(a)cgl.ucsf.edu<mailto:knudsen@cgl.ucsf.edu>>, Irwin Kuntz <kuntz(a)cgl.ucsf.edu<mailto:kuntz@cgl.ucsf.edu>>, "LaVail, Jennifer" <Jennifer.LaVail(a)ucsf.edu<mailto:Jennifer.LaVail@ucsf.edu>>, "Li, Lili" <Lili.Li(a)ucsf.edu<mailto:Lili.Li@ucsf.edu>>, "ljp(a)ucsf.edu<mailto:ljp@ucsf.edu>" <ljp(a)ucsf.edu<mailto:ljp@ucsf.edu>>, "lmucke(a)gladstone.ucsf.edu<mailto:lmucke@gladstone.ucsf.edu>" <lmucke(a)gladstone.ucsf.edu<mailto:lmucke@gladstone.ucsf.edu>>, "Locksley, Richard" <Richard.Locksley(a)ucsf.edu<mailto:Richard.Locksley@ucsf.edu>>, "loren(a)phy.ucsf.edu<mailto:loren@phy.ucsf.edu>" <loren(a)phy.ucsf.edu<mailto:loren@phy.ucsf.edu>>, "Correia, Maria" <almira.correia(a)ucsf.edu<mailto:almira.correia@ucsf.edu>>, Mark Von Zastrow <mark.vonzastrow(a)ucsf.edu<mailto:mark.vonzastrow@ucsf.edu>>, "McCormick, Frank" <Frank.mccormick(a)ucsf.edu<mailto:Frank.mccormick@ucsf.edu>>, "merz(a)phy.ucsf.edu<mailto:merz@phy.ucsf.edu>" <merz(a)phy.ucsf.edu<mailto:merz@phy.ucsf.edu>>, "Hebrok, Matthias" <Matthias.Hebrok(a)ucsf.edu<mailto:Matthias.Hebrok@ucsf.edu>>, "mike.mccune(a)ucsf.edu<mailto:mike.mccune@ucsf.edu>" <mike.mccune(a)ucsf.edu<mailto:mike.mccune@ucsf.edu>>, "msb(a)phy.ucsf.edu<mailto:msb@phy.ucsf.edu>" <msb(a)phy.ucsf.edu<mailto:msb@phy.ucsf.edu>>, "Wabl, Matthias" <Matthias.Wabl(a)ucsf.edu<mailto:Matthias.Wabl@ucsf.edu>>, "nms(a)ucsf.edu<mailto:nms@ucsf.edu>" <nms(a)ucsf.edu<mailto:nms@ucsf.edu>>, Patrick O'farrell <ofarrell(a)cgl.ucsf.edu<mailto:ofarrell@cgl.ucsf.edu>>, "olivijuly(a)gmail.com<mailto:olivijuly@gmail.com>" <olivijuly(a)gmail.com<mailto:olivijuly@gmail.com>>, "Oppenheimer, Norman" <Norman.Oppenheimer(a)ucsf.edu<mailto:Norman.Oppenheimer@ucsf.edu>>, "peter.ohara(a)ucsf.edu<mailto:peter.ohara@ucsf.edu>" <peter.ohara(a)ucsf.edu<mailto:peter.ohara@ucsf.edu>>, Peter Sargent <peter.sargent(a)ucsf.edu<mailto:peter.sargent@ucsf.edu>>, "Pinkel, Dan" <Dan.pinkel(a)ucsf.edu<mailto:Dan.pinkel@ucsf.edu>>, "R.A. Bradshaw" <rablab(a)uci.edu<mailto:rablab@uci.edu>>, "richard.m.lawn(a)gmail.com<mailto:richard.m.lawn@gmail.com>" <richard.m.lawn(a)gmail.com<mailto:richard.m.lawn@gmail.com>>, "Kelly, Regis" <Regis.Kelly(a)qb3.org<mailto:Regis.Kelly@qb3.org>>, "sbaekkeskov(a)ucsf.edu<mailto:sbaekkeskov@ucsf.edu>" <sbaekkeskov(a)ucsf.edu<mailto:sbaekkeskov@ucsf.edu>>, "scoyle79(a)gmail.com<mailto:scoyle79@gmail.com>" <scoyle79(a)gmail.com<mailto:scoyle79@gmail.com>>, "sfinkbeiner(a)gladstone.ucsf.edu<mailto:sfinkbeiner@gladstone.ucsf.edu>" <sfinkbeiner(a)gladstone.ucsf.edu<mailto:sfinkbeiner@gladstone.ucsf.edu>>, "sgl(a)phy.ucsf.edu<mailto:sgl@phy.ucsf.edu>" <sgl(a)phy.ucsf.edu<mailto:sgl@phy.ucsf.edu>>, Martin Shetlar <shetlar(a)cgl.ucsf.edu<mailto:shetlar@cgl.ucsf.edu>>, Anita Sil <sil(a)cgl.ucsf.edu<mailto:sil@cgl.ucsf.edu>>, "Prusiner, Stanley" <Stanley.Prusiner(a)ucsf.edu<mailto:Stanley.Prusiner@ucsf.edu>>, "steven.rosen(a)ucsf.edu<mailto:steven.rosen@ucsf.edu>" <steven.rosen(a)ucsf.edu<mailto:steven.rosen@ucsf.edu>>, "stimulusartifact(a)gmail.com<mailto:stimulusartifact@gmail.com>" <stimulusartifact(a)gmail.com<mailto:stimulusartifact@gmail.com>>, "stryker(a)phy.ucsf.edu<mailto:stryker@phy.ucsf.edu>" <stryker(a)phy.ucsf.edu<mailto:stryker@phy.ucsf.edu>>, "Kornberg, Tom" <Tom.Kornberg(a)ucsf.edu<mailto:Tom.Kornberg@ucsf.edu>>, Jon Trinidad <trinidad(a)cgl.ucsf.edu<mailto:trinidad@cgl.ucsf.edu>>, "vincent514(a)gmail.com<mailto:vincent514@gmail.com>" <vincent514(a)gmail.com<mailto:vincent514@gmail.com>>, "vlingappa(a)prosetta.com<mailto:vlingappa@prosetta.com>" <vlingappa(a)prosetta.com<mailto:vlingappa@prosetta.com>>, William Weiss <waweiss(a)gmail.com<mailto:waweiss@gmail.com>>, "wgreene(a)gladstone.ucsf.edu<mailto:wgreene@gladstone.ucsf.edu>" <wgreene(a)gladstone.ucsf.edu<mailto:wgreene@gladstone.ucsf.edu>>, "yinshen2000(a)gmail.com<mailto:yinshen2000@gmail.com>" <yinshen2000(a)gmail.com<mailto:yinshen2000@gmail.com>>, "yw.kan(a)ucsf.edu<mailto:yw.kan@ucsf.edu>" <yw.kan(a)ucsf.edu<mailto:yw.kan@ucsf.edu>>, "zena.werb(a)ucsf.edu<mailto:zena.werb@ucsf.edu>" <zena.werb(a)ucsf.edu<mailto:zena.werb@ucsf.edu>>, "Kanter, Joan" <Joan.Kanter(a)ucsf.edu<mailto:Joan.Kanter@ucsf.edu>>, "Donnella, Hayley" <Hayley.Donnella(a)ucsf.edu<mailto:Hayley.Donnella@ucsf.edu>>, "Titus, Erron" <Erron.Titus(a)ucsf.edu<mailto:Erron.Titus@ucsf.edu>> Subject: 9/22/16 Seminar with Grant Jensen BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Mission Hall 1400 Livestream: https://lecture.ucsf.edu/ets/Catalog/Full/f94c469bb908465691ec810f578ecbb221 Grant Jensen CalTech Structural biology in vivo through electron cryotomography September 22, 2016 B. DeGrado, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Two open positions on molecule visualization and virtual reality in Paris
by Tom Ferrin 21 Sep '16

21 Sep '16

FYI... -------- Forwarded Message -------- Subject: Two open positions on molecule visualization and virtual reality in Paris Date: Thu, 22 Sep 2016 01:03:38 +0200 From: baaden(a)smplinux.de To: tef(a)cgl.ucsf.edu Dear Colleague, It's already 2,5 years since Faraday discussion #169. I hope this message finds you well. Because of your interest for molecular visualization, I thought I share the following in the hope you can circulate it, or even direct candidates towards me :) Thanks in advance! We have two open positions in Paris, France, both relating to molecule and network visualization developments in Unity3D, and one specifically to VR. We are looking to hire ASAP and funds are available. The first position is for a postdoc on Development and Application of a Virtual Reality Immersive Modelling Platform for Enabling Drug Discovery. You can find an html version at [1] and PDF at [2]. The second position is for an engineer (or postdoc) on Computational Analysis, Visualization and Modeling of Redox Signaling Networks. You can find an html version at [3] and PDF at [4]. Thank you, Marc [1] http://www.baaden.ibpc.fr/ns16/pdoc1.html [2] http://www.baaden.ibpc.fr/ns16/pdoc1.pdf [3] http://www.baaden.ibpc.fr/ns16/inge1.html [4] http://www.baaden.ibpc.fr/ns16/inge1.pdf -- Dr. Marc Baaden - Institut de Biologie Physico-Chimique, Paris mailto:baaden@smplinux.de - http://www.baaden.ibpc.fr FAX: +33 15841 5026 - Tel: +33 15841 5176 ou +33 609 843217

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[Compbio-allhands] Fwd: Computational Biology faculty search at USC
by Andrej Sali 20 Sep '16

20 Sep '16

Sent from my iPhone Begin forwarded message: > From: Frank Uwe Alber <alber(a)usc.edu> > Date: September 20, 2016 at 7:42:19 AM PDT > To: Andrej Sali <sali(a)salilab.org> > Subject: Computational Biology faculty search at USC > > Hi Andrej, > > I just wanted to let you know that we are having a faculty search for one (or two) open rank positions, in case you know people who would like to apply. > > Here is the link: https://jobs.usc.edu/postings/74647 > > Best wishes, > Frank > > > ----------- > https://jobs.usc.edu/postings/74647 > > Requisition ID > 2002954 > Position ID > P01473861 > Academic Title > Assistant, Associate or Full Professor in Computational Biology > Department > Biological Sciences > Location > University Park Campus > Employment Type > Full-Time > > > The Department of Biological Sciences in the Dana and David Dornsife College of Letters, Arts and Sciences at the University of Southern California invites applications for Open Rank tenured Associate or Full Professor or tenure-track Assistant Professor positions in the broad area of Computational Biology. Applicants will be evaluated based on the overall originality of their work and promise for establishing a strong independent research program. > > Successful candidates will join the Molecular and Computational Biology section within Biological Sciences at USC, located in Los Angeles, California. We have a robust Ph.D. program in Computational Biology and Bioinformatics, which emphasizes both rigorous mathematical training and immersive co-localization with experimental biologists. The anticipated start date is August 16, 2017, and applicants must have received a Ph.D. (or equivalent) degree by time of appointment. > > Review of applications will begin November 1st, 2016 and continue until the position is filled. In order to be considered for this position, all candidates must apply via the “CLICK HERE” link at the top or bottom of this page. Please submit, in a single PDF file, a curriculum vita, a cover letter, a statement of research accomplishments and future research plans, and the contact information of at least three references. Please direct inquiries to: oginskis(a)usc.edu . > > USC is an equal-opportunity educator and employer, proudly pluralistic and firmly committed to providing equal opportunity for outstanding persons of every race, gender, creed and background. The University particularly encourages women, members of underrepresented groups, veterans and individuals with disabilities to apply. USC will make reasonable accommodations for qualified individuals with known disabilities unless doing so would result in an undue hardship. Further information is available by contacting uschr(a)usc.edu. > >

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[Compbio-allhands] Fwd: Group Leader Position at EMBL
by Andrej Sali 19 Sep '16

19 Sep '16

> Begin forwarded message: > > From: "Jan Ellenberg" <jan.ellenberg(a)embl.de> > Subject: Group Leader Position at EMBL > Date: September 19, 2016 at 12:39:55 AM PDT > To: sali(a)salilab.org > > Dear Andrej, > > I would like to draw your attention to two openings for a group leader position in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry or mathematics that want to pursue original and interdisciplinary research in cutting edge molecular cell biology, especially also in the areas of chemical biology and fluorescent probe development, image analysis and/bioimage informatics and computational modelling of complex dynamic biological processes. > > We generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD, and provide them with very generous internal support and a highly collaborative environment for their first independent position. We therefore strongly encourage highly promising young male and especially also female candidates to apply. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > All the best, > Jan > > Jan Ellenberg > Cell Biology and Biophysics Unit > European Molecular Biology Laboratory (EMBL) > Meyerhofstr. 1 > D-69117 Heidelberg > Germany > > T +49-6221-3878328 > F +49-6221-3878512 > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> > > > >

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[Compbio-allhands] 9/22/16 Seminar with Grant Jensen
by Flowers, Nicole 16 Sep '16

16 Sep '16

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Mission Hall 1400 Livestream: https://lecture.ucsf.edu/ets/Catalog/Full/f94c469bb908465691ec810f578ecbb221 Grant Jensen CalTech Structural biology in vivo through electron cryotomography September 22, 2016 B. DeGrado, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Greg Landrum will talk about RDKit Tomorrow Tues Sept 13 10am in BH313
by John Irwin 12 Sep '16

12 Sep '16

Greg Landrum will be talking about his toolkit RDKit tomorrow. Tues Sept 13 10am in BH313 Over the past 5 years or so, RDKit had changed the landscape of chemoinformatics and has had a huge impact on our research. John

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[Compbio-allhands] Fwd: Faculty opening in Computational Biology
by Andrej Sali 12 Sep '16

12 Sep '16

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Ilya Vakser <vakser(a)ku.edu> > Subject: Faculty opening in Computational Biology > Date: September 12, 2016 at 10:14:21 AM PDT > To: Ilya Vakser <vakser(a)ku.edu> > > Dear Colleagues, > We would highly appreciate if you attract attention of qualified individuals to a tenure-track faculty opening in Computational Biology at The University of Kansas - see the ad attached. > Thank you very much! > Ilya > > ------ > Ilya Vakser > Professor and Director > Computational Biology Program and Center for Computational Biology > Professor > Department of Molecular Biosciences > The University of Kansas > 2030 Becker Dr. > Lawrence, KS 66045 > vakser(a)ku.edu <mailto:vakser@ku.edu>, +1-785-864-1057 > www.compbio.ku.edu <http://www.compbio.ku.edu/> > >

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[Compbio-allhands] Fwd: PhD and postdoc positions avaiable
by Andrej Sali 06 Sep '16

06 Sep '16

> Begin forwarded message: > > From: Kresten Lindorff-Larsen <lindorff(a)bio.ku.dk> > Subject: PhD and postdoc positions avaiable > Date: September 6, 2016 at 11:15:31 AM PDT > To: Kresten Lindorff-Larsen <lindorff(a)bio.ku.dk> > > Dear colleagues > > We're looking to hire several postdocs and a ph.d. student working on various aspects of computational biology and integrative structural biology. If you know of any strong candidates that are looking for positions, I would appreciate it if you would pass on the adverts on to them, or have them contact me directly. > > For the postdoc positions, we are looking for people with a strong background in molecular dynamics simulations as well as people with hands on experience interpreting experimental data using computational simulation methods. > > Postdoc positions (deadline for applications Sept 15th): > http://employment.ku.dk/faculty/?show=850415 <http://employment.ku.dk/faculty/?show=850415> > Ph.d. position (deadline for applications Sept 16th): > http://employment.ku.dk/phd/?show=851613 <http://employment.ku.dk/phd/?show=851613> > > The positions advertised above have starting dates between now and february, but we will also be hiring 1-2 additional people over the next year, so if you know of candidates who have a longer timeframe, that is also of interest. > > > Regards > Kresten > > > > > -- > Prof. Kresten Lindorff-Larsen > Structural Biology and NMR Laboratory & Linderstrøm-Lang Centre for Protein Science > Department of Biology, University of Copenhagen > Rm. 3.2.11, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark > Mobile: +45 4267 0074 ; Office: +45 3532 2027 > > >

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[Compbio-allhands] Fwd: Comp Chem open position at Biogen
by Jacobson, Matt 26 Aug '16

26 Aug '16

- Matt Begin forwarded message: From: Govinda Bhisetti <govinda.bhisetti(a)biogen.com<mailto:govinda.bhisetti@biogen.com>> Subject: Comp Chem open position at Biogen Date: August 26, 2016 at 9:05:02 AM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Dear Prof. Jacobson I have an open position in my group. Likely to have one more next year. Please see the attachment for the job description. Mark Murcko suggested that I contact you to find post-docs in your group with suitable training/experience who might be interested to work at Biogen. Please ask interested candidates to contact me. Thanks and regards. -Govinda Govinda Rao Bhisetti, PhD Principal Investigator and Head of Computational Chemistry Chem & Mol Therapeutics Biogen | 225 Binney Street | Cambridge, MA | 02142 Email: govinda.bhisetti(a)biogen.com<mailto:john.smith@biogen.com>| Direct: 617 914 7273 | Mobile: 781 325 6029 [cid:d748c923-d57c-4042-af36-219dd386c41c@ucsf.edu]

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[Compbio-allhands] Fwd: Comp Chem open position at Biogen
by Brian Shoichet 26 Aug '16

26 Aug '16

---------- Forwarded message ---------- From: Govinda Bhisetti <govinda.bhisetti(a)biogen.com> Date: Fri, Aug 26, 2016 at 8:40 AM Subject: Comp Chem open position at Biogen To: "shoichet(a)cgl.ucsf.edu" <shoichet(a)cgl.ucsf.edu> Hi Brian, I have an open position in my group. Likely to have one more next year. Please see the attachment for the job description. Please let me know if you have anyone suitable for this position in your group who would be interested to work at Biogen. Regards. -Govinda *Govinda Rao Bhisetti, PhD* Principal Investigator and Head of Computational Chemistry Chem & Mol Therapeutics Biogen | 225 Binney Street | Cambridge, MA | 02142 Email: govinda.bhisetti(a)biogen.com <john.smith(a)biogen.com>| Direct: 617 914 7273 | Mobile: 781 325 6029 [image: unknown.png] -- Brian Shoichet, Professor http://bkslab.org/ <http://www.uoft.bkslab.org/> 415-514-4126 University of California, San Francisco Dept. of Pharmaceutical Chemistry By Courtesy: University of Toronto, Faculty of Pharmacy Ontario Institute for Cancer Research

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[Compbio-allhands] Fwd: WANTED: Talented computational chemists
by Jacobson, Matt 26 Aug '16

26 Aug '16

- Matt Begin forwarded message: Subject: WANTED: Talented computational chemists Date: August 26, 2016 at 7:54:50 AM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Matt, The Modeling and Informatics group at Merck is seeking creative, self-motivated entry level PhD computational chemists with exceptional interpersonal and problem solving skills to join our scientific teams in Boston, MA or West Point, PA. If you have (or know of) any talented students who might be interested, could you please ask them to apply online here<https://merck.taleo.net/careersection/int_merckunitedstates_10880_en/jobdet…>? The job code is CHE004912. And thanks for already sending along Katrina. She’s great! - Kate M. Katharine Holloway, Ph.D. | Senior Principal Scientist | Structural Chemistry | Merck & Co WP14-1101 | 215-652-7425 (Office) |

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[Compbio-allhands] Fwd: job opportunity: computational epidemiology
by Jacobson, Matt 09 Aug '16

09 Aug '16

- Matt Begin forwarded message: From: Jaline Gerardin <jgerardin(a)idmod.org<mailto:jgerardin@idmod.org>> Subject: job opportunity: computational epidemiology Date: August 9, 2016 at 2:26:39 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>>, "rebecca.brown3(a)ucsf.edu<mailto:rebecca.brown3@ucsf.edu>" <rebecca.brown3(a)ucsf.edu<mailto:rebecca.brown3@ucsf.edu>> Hi Matt and Rebecca, Would you mind recirculating our job posting to the compbio/iPQB listservs? We’re looking for someone with a strong quantitative background and a couple years of experience with coding/scripting. Previous knowledge of malaria and disease modeling are absolutely not required. The pay is competitive for Research Scientist positions, and Seattle is a great place to live! Thanks, and hope this finds you well. Jaline jgerardin(a)idmod.org<mailto:jgerardin@idmod.org> ________________________________ TITLE: Research Scientist – Malaria LOCATION: Bellevue, WA, USA The Institute for Disease Modeling (IDM) team is composed of research scientists and software professionals who focus on creating powerful and innovative disease modeling and data analysis tools to help researchers and policy makers understand diseases, their causes, the way they spread, and the best types of interventions to use for the particular situation faced. IDM partners with selected universities, NGOs, government ministries, and other research and public health institutions focused on researching new ways to understand and combat diseases both locally and globally. We seek a full-time Research Scientist to work as part of the IDM malaria team and collaborate on the development, refinement, and utilization of sophisticated infectious disease models for epidemiological research and eradication-campaign planning. The IDM team architects advanced models of disease transmission, develops computational tools to inform global disease eradication policy, conducts innovative analysis of epidemiologically- and policy-relevant data (programmatic data, financial data, clinical trials data, and cluster surveys data), and identifies epidemiologically critical knowledge gaps. As part of our work, we routinely collaborate with groups at the World Health Organization, the Center for Disease Control, PATH, the Bill and Melinda Gates Foundation, ministries of health in the developing world, as well as universities and research institutes. As part of this group, the researcher will design and build new modules for the existing malaria disease model. The researcher will configure, calibrate, and exercise disease models to answer questions aimed at refining the malaria research agenda, improving understanding of disease dynamics, informing effective public health campaigns, and guiding rational development of new public-health interventions. The research, models, and results will be presented to key stakeholders, displayed at conferences, and published in academic journals. Joining our group provides unique opportunities to interact with global-health policymakers, to collaborate with world-class research laboratories and non-profit organizations, and to contribute to global and national disease-eradication strategies. Responsibilities: · Reviews scientific literature and determines which aspects of biology, demography, geography, and climate are relevant to the model. · Builds new modules for existing disease models; builds and develops new disease models. · Works closely with the modelers, programmers, and statisticians on the team to refine the models and use them to conduct sensitivity analyses, explore tradeoffs among possible interventions, and optimize eradication plans for time, cost, or other factors. · Finds sources for the necessary input data to the models and helps to organize the necessary data for input to the models. · Writes software code (in C/C++) to implement model features. · Collects, analyzes, and presents data on model results and performance. · Assists in the preparation of research articles and conference presentations communicating the project and its results to the scientific community. Key Qualifications and Required Skills: · Ph.D. in a quantitative field (e.g. Applied Mathematics, Statistics, Epidemiology, Quantitative Biology) · Numerical analysis, dynamical systems, stochastic processes, and biostatistics. · Read and write research articles in biology and applied mathematics. · Principles, techniques, and tools of computational epidemiology. · Work extended hours to meet a deadline; demonstrated ability to work productively as part of a small team. · At least 2 years’ experience in C/C++ software development. · Proficiency in at least one data-analysis or scripting language (e.g. MATLAB, python, R) · Multiple published articles in peer-reviewed scientific journals (to be submitted with application). · Knowledge of developing-world public health issues and the malaria disease system preferred.

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[Compbio-allhands] Fwd: Recruiting two postdocs for GROMACS improvements and development
by Jacobson, Matt 02 Aug '16

02 Aug '16

- Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Recruiting two postdocs for GROMACS improvements and development Date: August 2, 2016 at 1:22:52 AM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Cc: Peter Kasson <kasson(a)virginia.edu<mailto:kasson@virginia.edu>> Hello, all- Myself and Peter Kasson, in close cooperation with Erik Lindahl and Mark Abraham at KTH, have recently obtained funding for GROMACS development work on the US side. We now have two postdoc positions open, as detailed below, one based in Virginia and one in Colorado. We’d love it if you could pass on this email to current or former students of yours, or others you may know who may be interested. The mandate on the Virginia side involves API design and implementation and cloud- and dataflow-based parallelization, while on the Colorado side it involves statistical physics to test and diagnose simulation validity, improving the testing framework, and new Monte Carlo methods. Strong software engineering skills are a must, and we would particularly appreciate active members of the molecular simulation development community. As always, members of groups under-represented in the molecular simulation field are especially encouraged to apply. Please refer anyone you think appropriate or apply at the links below. Thanks! Michael Shirts ------------------------ The Shirts research group in the Department of Chemical and Biological Engineering is hiring a highly capable research associate to help develop the GROMACS molecular simulation package. GROMACS is an open-source project with a strong international development community as well as a 10,000+ user base. This position is part of a new NIH funded collaborative effort between the Shirts group and the Kasson group (at the University of Virginia) to improve the robustness, functionality, and usability of GROMACS, offering the candidate the opportunity to positively affect the work of thousands of researchers across the globe. Candidates will have the opportunity to learn state-of-the-art simulation methodology and work collaboratively with a global team of developers. This position requires a Ph.D. in Chemistry, Chemical Engineering, Physics, Computer Science or a related field. It requires very strong statistical mechanical, molecular simulation and theoretical skills, as well as significant software engineering experience and ability. Experience in C++ and Python is preferred, as well as experience with version control, code review systems, and team-oriented software development. Competitive candidates will have a track record of scientific success in graduate study with a strong publication record. Apply at https://cu.taleo.net/careersection/2/jobdetail.ftl?job=05979&lang=en&sns_id… ----------- The Kasson laboratory located within the Department of Molecular Physiology & Biological Physics at the University of Virginia seeks a talented postdoctoral scholar to help further the development of the GROMACS molecular simulation package. GROMACS is an open-source project with a strong international development community as well as a 10,000+ user base. The Kasson and Shirts laboratories have recently secured funding to contribute new development to GROMACS. We are seeking a postdoctoral scholar with strong software engineering skills to help build this widely-used scientific software package. This scholar will gain experience in and exposure to the broad base of GROMACS users and developers as well as skills in API design and parallel cloud-computing analytics. Skills not only in C++ and Python programming but also version control and code review systems are essential. A track record of contributions to open-source software is desired as well. Scientific background related to simulation science is desired; competitive candidates will have a track record of scientific success in graduate study with a strong publication record. For inquiry into the position, please refer to the posting number 0619061. Apply at https://jobs.virginia.edu/applicants/Central?quickFind=79490 ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB D317 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] Fwd: Tenure-Track Assistant Professor in Biochemistry position
by Brian Shoichet 19 Jul '16

19 Jul '16

FYI. ---------- Forwarded message ---------- From: Spencer Anthony-Cahill <Spencer.Anthony-Cahill(a)wwu.edu> Date: Mon, Jul 18, 2016 at 6:15 PM Subject: Tenure-Track Assistant Professor in Biochemistry position To: "shoichet(a)cgl.ucsf.edu" <shoichet(a)cgl.ucsf.edu> Dear Professor Shoichet: I am reaching out to prominent structural biologists and biophysicists to bring to your attention a job posting we have for a tenure track assistant professorship in biochemistry. Western Washington University is a predominantly undergraduate institution. Our mission is to primarily serve our undergraduate population and engage them in meaningful research projects, which are commonly funded through federal grants and often result in quality peer-reviewed publications. Additionally, our Masters graduate program has grown over the past few years, which also bolsters our research infrastructure. We are keenly interested in attracting outstanding new faculty members who are motivated to work in this environment and excel in both teaching and research. We are particularly interested in candidates with interests in biochemistry and/or biophysics. If you know of any quality candidates that would be a good fit for our department, please encourage them to apply. Here is the link to our job posting: https://jobs.wwu.edu/JobPosting.aspx?JPID=7056 With best regards, Spencer. Spencer Anthony-Cahill, Ph.D. Professor of Chemistry, and Department Chair Email: Spencer.Anthony-Cahill(a)wwu.edu Tel: 360 650 3071 Morse Hall (CB) 270 516 High Street Bellingham, WA 98225-9150 -- Brian Shoichet, Professor http://bkslab.org/ <http://www.uoft.bkslab.org/> 415-514-4126 University of California, San Francisco Dept. of Pharmaceutical Chemistry By Courtesy: University of Toronto, Faculty of Pharmacy Ontario Institute for Cancer Research

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[Compbio-allhands] Fwd: Job ads
by Jacobson, Matt 07 Jul '16

07 Jul '16

- Matt Begin forwarded message: From: "Lexa, Katrina W" <katrina.lexa(a)merck.com<mailto:katrina.lexa@merck.com>> Subject: Job ads Date: July 7, 2016 at 7:22:44 AM PDT To: Matt Jacobson <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Hi Matt! A good friend of mine from Michigan works in the Chemistry department at Rollins College, just outside of Orlando. They’re hiring for a tenure-track assistant level professor position to start in August 2017, and they’re hoping for someone with a computational background: http://jobs.rollins.edu/cw/en-us/job/492307/assistant-professor-chemistry Also, Merck is hiring for two computational positions, one in Boston https://taleo.msd.com/careersection/merck_external_career_section/jobdetail… And one in West Point PA https://taleo.msd.com/careersection/merck_external_career_section/jobdetail… If you know anyone who might be interested, please pass the word along. Thanks! Hope everything in SF is going well, ------------------------------- Katrina Lexa Merck & Co., Inc. 126 East Lincoln Ave RY800-C364 Rahway, NJ 07065 phone: (732) 594-7058 office: RY800-D365 Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system.

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