- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] a group leader position at A*STAR Institute in Singapore
by Andrej Sali 05 Feb '13

05 Feb '13

get in touch with Dr. Chandra Verma, chandra(a)bii.a-star.edu.sg, http://www.bii.a-star.edu.sg/research/biography/chandra.php : i understand they would especially like to encourage female group leader candidates to apply. "a position is available for the position of a group leader in the Bioinformatics Instt (A*STAR) in Singapore. we are looking for someone with 4-5 years postdoctoral experience in the field of computational modelling of biomolecules who will develop a program involving the computational interrogation of large biomolecules and their assemblies and their significance in health and disease. the institute is a part of a large network of institutes and 2 major universities and hospitals with immense opportunities to collaborate with enthusiastic scientists from all disciplines and with clinicians. In addition, there are opportunities for the person to develop a small experimental effort to complement their computational work if necessary." -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Bioinformatics groupleader position in Dresden, Germany
by Andrej Sali 04 Feb '13

04 Feb '13

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry University of California at San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant, Ms. Hilary Mahon, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Sabine Jochens <jochens(a)mpi-cbg.de> > Date: February 4, 2013, 3:09:30 AM PST > To: "APArkin(a)lbl.gov" <APArkin(a)lbl.gov>, "Charles_Lawrence(a)brown.edu" <Charles_Lawrence(a)brown.edu>, "mbeisen(a)berkeley.edu" <mbeisen(a)berkeley.edu>, "tp(a)ai.mit.edu" <tp(a)ai.mit.edu>, "Alexander.Bockmayr(a)fu-berlin.de" <Alexander.Bockmayr(a)fu-berlin.de>, "Alexander.Verkhovsky(a)epfl.ch" <Alexander.Verkhovsky(a)epfl.ch>, "Amos.Bairoch(a)isb-sib.ch" <Amos.Bairoch(a)isb-sib.ch>, "Andrew.Millar(a)ed.ac.uk" <Andrew.Millar(a)ed.ac.uk>, 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"manoli(a)mit.edu" <manoli(a)mit.edu>, "marcotte(a)icmb.utexas.edu" <marcotte(a)icmb.utexas.edu>, "margit.leitner(a)uni-jena.de" <margit.leitner(a)uni-jena.de>, "mario.albrecht(a)mpi-inf.mpg.de" <mario.albrecht(a)mpi-inf.mpg.de>, "mark(a)ncmir.ucsd.edu" <mark(a)ncmir.ucsd.edu>, "martin.fussenegger(a)bsse.ethz.ch" <martin.fussenegger(a)bsse.ethz.ch>, "martin.hofmann-apitus(a)scai.fraunhofer.de" <martin.hofmann-apitus(a)scai.fraunhofer.de>, "martin.vingron(a)molgen.mpg.de" <martin.vingron(a)molgen.mpg.de>, "martin.zacharias(a)ph.tum.de" <martin.zacharias(a)ph.tum.de>, "martinetz(a)inb.uni-luebeck.de" <martinetz(a)inb.uni-luebeck.de>, "maryann(a)ncmir.ucsd.edu" <maryann(a)ncmir.ucsd.edu>, "masch(a)informatik.uni-kiel.de" <masch(a)informatik.uni-kiel.de>, "matthias.wolf(a)biozentrum.uni-wuerzburg.de" <matthias.wolf(a)biozentrum.uni-wuerzburg.de>, "mauer(a)lbl.gov" <mauer(a)lbl.gov>, "maywang(a)bme.gatech.edu" <maywang(a)bme.gatech.edu>, "mbaudis(a)imls.uzh.ch" <mbaudis(a)imls.uzh.ch>, "meijering(a)imagescience.org" <meijering(a)imagescience.org>, "mering(a)imls.uzh.ch" <mering(a)imls.uzh.ch>, "mering(a)molbio.unizh.ch" <mering(a)molbio.unizh.ch>, "mferrari(a)cebitec.uni-bielefeld.de" <mferrari(a)cebitec.uni-bielefeld.de>, "michael.krauthammer(a)yale.edu" <michael.krauthammer(a)yale.edu>, "michael.stadler(a)fmi.ch" <michael.stadler(a)fmi.ch>, "michael.unser(a)epfl.ch" <michael.unser(a)epfl.ch>, "mihaela.zavolan(a)unibas.ch" <mihaela.zavolan(a)unibas.ch>, "mikeh(a)alleninstitute.org" <mikeh(a)alleninstitute.org>, "mittag(a)eva.mpg.de" <mittag(a)eva.mpg.de>, "mitya(a)janelia.hhmi.org" <mitya(a)janelia.hhmi.org>, "mjs(a)di.fc.ul.pt" <mjs(a)di.fc.ul.pt>, "moeller(a)inb.uni-luebeck.de" <moeller(a)inb.uni-luebeck.de>, "mplatzer(a)fli-leibniz.de" <mplatzer(a)fli-leibniz.de>, "murphy(a)cmu.edu" <murphy(a)cmu.edu>, "mustafa.khammash(a)bsse.ethz.ch" <mustafa.khammash(a)bsse.ethz.ch>, "nick.monk(a)nottingham.ac.uk" <nick.monk(a)nottingham.ac.uk>, "nieselt(a)informatik.uni-tuebingen.de" <nieselt(a)informatik.uni-tuebingen.de>, "niko.beerenwinkel(a)bsse.ethz.ch" <niko.beerenwinkel(a)bsse.ethz.ch>, "nils(a)sys-bio.net" <nils(a)sys-bio.net>, "olaf.wolkenhauer(a)uni-rostock.de" <olaf.wolkenhauer(a)uni-rostock.de>, "oliver.kohlbacher(a)uni-tuebingen.de" <oliver.kohlbacher(a)uni-tuebingen.de>, "olivier.bodenreider(a)nih.gov" <olivier.bodenreider(a)nih.gov>, "p.d.moerland(a)amc.nl" <p.d.moerland(a)amc.nl>, "p.m.a.sloot(a)uva.nl" <p.m.a.sloot(a)uva.nl>, "paloy(a)irbbarcelona.org" <paloy(a)irbbarcelona.org>, "parsch(a)bio.lmu.de" <parsch(a)bio.lmu.de>, "pascal.fua(a)epfl.ch" <pascal.fua(a)epfl.ch>, "patla(a)ida.liu.se" <patla(a)ida.liu.se>, "paul.wrede(a)charite.de" <paul.wrede(a)charite.de>, "pb(a)di.fct.unl.pt" <pb(a)di.fct.unl.pt>, "pdthomas(a)usc.edu" <pdthomas(a)usc.edu>, "pedro.mendes(a)manchester.ac.uk" <pedro.mendes(a)manchester.ac.uk>, "pelkmans(a)imsb.biol.ethz.ch" <pelkmans(a)imsb.biol.ethz.ch>, "perona(a)caltech.edu" <perona(a)caltech.edu>, "peter.horvath(a)lmc.biol.ethz.ch" <peter.horvath(a)lmc.biol.ethz.ch>, "peter.kunszt(a)systemsx.ch" <peter.kunszt(a)systemsx.ch>, "peter.robinson(a)charite.de" <peter.robinson(a)charite.de>, "petros(a)ethz.ch" <petros(a)ethz.ch>, "pfbaldi(a)ics.uci.edu" <pfbaldi(a)ics.uci.edu>, "philipp.bucher(a)epfl.ch" <philipp.bucher(a)epfl.ch>, "pm286(a)cam.ac.uk" <pm286(a)cam.ac.uk>, "pohl(a)uphs.upenn.edu" <pohl(a)uphs.upenn.edu>, "ppevzner(a)ucsd.edu" <ppevzner(a)ucsd.edu>, "r.eils(a)dkfz.de" <r.eils(a)dkfz.de>, "r.vandriel(a)uva.nl" <r.vandriel(a)uva.nl>, "rainer.merkl(a)biologie.uni-regensburg.de" <rainer.merkl(a)biologie.uni-regensburg.de>, "rajewsky(a)mdc-berlin.de" <rajewsky(a)mdc-berlin.de>, "ralf.baumeister(a)biologie.uni-freiburg.de" <ralf.baumeister(a)biologie.uni-freiburg.de>, "ralf.sommer(a)tuebingen.mpg.de" <ralf.sommer(a)tuebingen.mpg.de>, "ralph.schlapbach(a)fgcz.ethz.ch" <ralph.schlapbach(a)fgcz.ethz.ch>, "rarey(a)zbh.uni-hamburg.de" <rarey(a)zbh.uni-hamburg.de>, "rd(a)sanger.ac.uk" <rd(a)sanger.ac.uk>, "reinert(a)inf.fu-berlin.de" <reinert(a)inf.fu-berlin.de>, "reinhard.guthke(a)hki-jena.de" <reinhard.guthke(a)hki-jena.de>, "reinhard.sterner(a)biologie.uni-regensburg.de" <reinhard.sterner(a)biologie.uni-regensburg.de>, "renato.paro(a)bsse.ethz.ch" <renato.paro(a)bsse.ethz.ch>, "rguigo(a)imim.es" <rguigo(a)imim.es>, "rich(a)ini.phys.ethz.ch" <rich(a)ini.phys.ethz.ch>, "rickl(a)uci.edu" <rickl(a)uci.edu>, "robert.preissner(a)charite.de" <robert.preissner(a)charite.de>, "robert.russell(a)bioquant.uni-heidelberg.de" <robert.russell(a)bioquant.uni-heidelberg.de>, "robert(a)techfak.uni-bielefeld.de" <robert(a)techfak.uni-bielefeld.de>, "roeland.merks(a)sysbio.nl" <roeland.merks(a)sysbio.nl>, "rost(a)rostlab.org" <rost(a)rostlab.org>, "sali(a)salilab.org" <sali(a)salilab.org>, "sandeep(a)ncbs.res.in" <sandeep(a)ncbs.res.in>, "sanderc(a)mskcc.org" <sanderc(a)mskcc.org>, "sandrine(a)stat.berkeley.edu" <sandrine(a)stat.berkeley.edu>, "sankoff(a)uottawa.ca" <sankoff(a)uottawa.ca>, "sat(a)mrc-lmb.cam.ac.uk" <sat(a)mrc-lmb.cam.ac.uk>, "savas.tay(a)bsse.ethz.ch" <savas.tay(a)bsse.ethz.ch>, "sbalzarini(a)inf.ethz.ch" <sbalzarini(a)inf.ethz.ch>, "sebastian.boecker(a)uni-jena.de" <sebastian.boecker(a)uni-jena.de>, "sefraser(a)caltech.edu" <sefraser(a)caltech.edu>, "serafim(a)cs.stanford.edu" <serafim(a)cs.stanford.edu>, "shimizu(a)botinst.uzh.ch" <shimizu(a)botinst.uzh.ch>, "shm(a)doc.ic.ac.uk" <shm(a)doc.ic.ac.uk>, "simon.berneche(a)unibas.ch" <simon.berneche(a)unibas.ch>, "sjb(a)cs.ucsd.edu" <sjb(a)cs.ucsd.edu>, "soeding(a)genzentrum.lmu.de" <soeding(a)genzentrum.lmu.de>, "sorin(a)cs.brown.edu" <sorin(a)cs.brown.edu>, "sridhar(a)umiacs.umd.edu" <sridhar(a)umiacs.umd.edu>, "sroth(a)cs.tu-darmstadt.de" <sroth(a)cs.tu-darmstadt.de>, "sta(a)molgen.mpg.de" <sta(a)molgen.mpg.de>, "stefan.haas(a)molgen.mpg.de" <stefan.haas(a)molgen.mpg.de>, "stefan.posch(a)informatik.uni-halle.de" <stefan.posch(a)informatik.uni-halle.de>, "stefan.rensing(a)biologie.uni-freiburg.de" <stefan.rensing(a)biologie.uni-freiburg.de>, "stefan.schu(a)uni-jena.de" <stefan.schu(a)uni-jena.de>, "stefano.fusi(a)columbia.edu" <stefano.fusi(a)columbia.edu>, "stephan(a)bio.lmu.de" <stephan(a)bio.lmu.de>, "steveh(a)fhcrc.org." <steveh(a)fhcrc.org>, "stormo(a)wustl.edu" <stormo(a)wustl.edu>, "strimmer(a)uni-leipzig.de" <strimmer(a)uni-leipzig.de>, "stuart(a)aiai.ed.ac.uk" <stuart(a)aiai.ed.ac.uk>, "student.wbbib(a)uj.edu.pl" <student.wbbib(a)uj.edu.pl>, "studla(a)bioinf.uni-leipzig.de" <studla(a)bioinf.uni-leipzig.de>, "stwong(a)tmhs.org" <stwong(a)tmhs.org>, "suzi(a)fruitfly.org" <suzi(a)fruitfly.org>, "sven.panke(a)bsse.ethz.ch" <sven.panke(a)bsse.ethz.ch>, "sysbio(a)cyanolab.de" <sysbio(a)cyanolab.de>, "szekely(a)vision.ee.ethz.ch" <szekely(a)vision.ee.ethz.ch>, "t.hoefer(a)dkfz-heidelberg.de" <t.hoefer(a)dkfz-heidelberg.de>, "taddei(a)necker.fr" <taddei(a)necker.fr>, "tandy(a)cs.utexas.edu" <tandy(a)cs.utexas.edu>, "tautz(a)evolbio.mpg.de" <tautz(a)evolbio.mpg.de>, "tdeserno(a)mi.rwth-aachen.de" <tdeserno(a)mi.rwth-aachen.de>, "terry(a)stat.berkeley.edu" <terry(a)stat.berkeley.edu>, "thattai(a)ncbs.res.in" <thattai(a)ncbs.res.in>, "thomas.rattei(a)univie.ac.at" <thomas.rattei(a)univie.ac.at>, "thornton(a)ebi.ac.uk" <thornton(a)ebi.ac.uk>, "tian(a)ieee.org" <tian(a)ieee.org>, "tideker(a)ucsd.edu" <tideker(a)ucsd.edu>, "tiedeman(a)uni-potsdam.de" <tiedeman(a)uni-potsdam.de>, "toga(a)loni.ucla.edu" <toga(a)loni.ucla.edu>, "tompa(a)cs.washington.edu" <tompa(a)cs.washington.edu>, "torda(a)zbh.uni-hamburg.de" <torda(a)zbh.uni-hamburg.de>, "Torsten.Schwede(a)unibas.ch" <torsten.schwede(a)unibas.ch>, "torsten(a)cs.uni-potsdam.de" <torsten(a)cs.uni-potsdam.de>, "tresch(a)lmb.uni-muenchen.de" <tresch(a)LMB.uni-muenchen.de>, "u.klingmueller(a)dkfz.de" <u.klingmueller(a)dkfz.de>, "udo.hahn(a)uni-jena.de" <udo.hahn(a)uni-jena.de>, "urialon(a)weizmann.ac.il" <urialon(a)weizmann.ac.il>, "v.ntziachristos(a)tum.de" <v.ntziachristos(a)tum.de>, "vassily.hatzimanikatis(a)epfl.ch" <vassily.hatzimanikatis(a)epfl.ch>, "vbafna(a)cs.ucsd.edu" <vbafna(a)cs.ucsd.edu>, "vdanos(a)inf.ed.ac.uk" <vdanos(a)inf.ed.ac.uk>, "volker.heun(a)bio.ifi.lmu.de" <volker.heun(a)bio.ifi.lmu.de>, "volkhard.helms(a)bioinformatik.uni-saarland.de" <volkhard.helms(a)bioinformatik.uni-saarland.de>, "volkmar.liebscher(a)uni-greifswald.de" <volkmar.liebscher(a)uni-greifswald.de>, "w.martin(a)hhu.de" <w.martin(a)hhu.de>, "w.mewes(a)wzw.tum.de" <w.mewes(a)wzw.tum.de>, "w_smith(a)lifesci.ucsb.edu" <w_smith(a)lifesci.ucsb.edu>, "walther(a)mpimp-golm.mpg.de" <walther(a)mpimp-golm.mpg.de>, "wcm2(a)psu.edu" <wcm2(a)psu.edu>, "weickert(a)mia.uni-saarland.de" <weickert(a)mia.uni-saarland.de>, "weigel(a)weigelworld.org" <weigel(a)weigelworld.org>, "weilp(a)mail.cbi.pku.edu.cn" <weilp(a)mail.cbi.pku.edu.cn>, "whitaker(a)cs.utah.edu" <whitaker(a)cs.utah.edu>, "whuber(a)embl.de" <whuber(a)embl.de>, "wkimwkim(a)googlemail.com" <wkimwkim(a)googlemail.com>, "wojmak(a)uni-muenster.de" <wojmak(a)uni-muenster.de>, "wolfgang.heiden(a)h-brs.de" <wolfgang.heiden(a)h-brs.de>, "wolfram.gronwald(a)klinik.uni-regensburg.de" <wolfram.gronwald(a)klinik.uni-regensburg.de>, "wolfram.weckwerth(a)univie.ac.at" <wolfram.weckwerth(a)univie.ac.at>, "wolfson(a)post.tau.ac.il" <wolfson(a)post.tau.ac.il>, "wwwadmin(a)statistik.tu-dortmund.de" <wwwadmin(a)statistik.tu-dortmund.de>, "yann(a)cs.nyu.edu" <yann(a)cs.nyu.edu>, "yliharja(a)cs.tut.fi" <yliharja(a)cs.tut.fi>, "zamboni(a)imsb.biol.ethz.ch" <zamboni(a)imsb.biol.ethz.ch>, "zdobnov(a)medecine.unige.ch" <zdobnov(a)medecine.unige.ch>, "zolli(a)aim.uzh.ch" <zolli(a)aim.uzh.ch> > Subject: Bioinformatics groupleader position in Dresden, Germany > > Dear Sir or Madam, > > On behalf of Prof. Michael Schröder I am sending out this advertisement for an open groupleader position within bioinformatics in Dresden. Please see below. > > > Dear colleague, > > we have an opening for a bioinformatics groupleader in Dresden. I'd be very grateful if you could pass this email on to anybody possibly interested. > > Bioinformatics groupleader in Dresden > Details: http://tinyurl.com/aswtk6e > Deadline: 7 March 2013 > Biotec: www.biotec.tu-dresden.de Bioinfo: www.compbio-dresden.de > > --- > Michael Schroeder, Professor in Bioinformatics > Director BiOTEC, TU Dresden > > Tatzberg 47-51, 01307 Dresden, Germany > > w: www.biotec.tu-dresden.de > t: +49 351 463 400 60 > f: +49 351 463 400 61 > e: ms(a)biotec.tu-dresden.de > > > > > Best regards, > > Sabine Jochens (Mrs) > _____________________________ > Assistant to Dr. Gene Myers, Director > Tschira Chair of Systems Biology > > Max Planck Institute of > Molecular Cell Biology and Genetics > Pfotenhauerstrasse 108 > 01307 Dresden, Germany > > Tel +49 351 210-2440 > Fax +49 351 210-1209 > E-mail: jochens(a)mpi-cbg.de > http://www.mpi-cbg.de >

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[Compbio-allhands] Fwd: 2013 Center for the Physics of Living Cells Summer School
by Jacobson, Matt 01 Feb '13

01 Feb '13

Begin forwarded message: From: "Yodh, Jaya G" <jyodh(a)illinois.edu<mailto:jyodh@illinois.edu>> Subject: 2013 Center for the Physics of Living Cells Summer School Date: January 31, 2013 5:35:59 PM PST To: "Yodh, Jaya G" <jyodh(a)illinois.edu<mailto:jyodh@illinois.edu>> Dear Colleagues, On behalf of the Center for the Physics of Living Cells (CPLC), an NSF Physics Frontier Center at the University of Illinois, Urbana-Champaign, we are writing to announce the 2013 Physics of Living Cells Summer School being offered from July 15 – 20, 2013 at theUniversity of Illinois at Urbana-Champaign. This one-week program is designed for graduate students, postdoctoral fellows and researchers in the chemical and life sciences, biophysics, physics, and engineering who would like to expand their training into the areas of single-molecule and live-cell experimental and computational biophysics. Could you please post and circulate the attached announcement to those who might be interested? For more information and to apply by March 15, please visit: http://www.cplc.illinois.edu/summerschool2013/ . Thank you, Jaya Yodh Jaya Yodh, Ph.D. Research Assistant Professor, Dept. of Physics CPLC Director of Education and Outreach University of Illinois at Urbana-Champaign Center for the Physics of Living Cells (CPLC) 1110 W. Green St., Urbana, IL 61801 Phone: 217-244-1155; Fax: 217-333-4778 E-mail: jyodh(a)illinois.edu<mailto:jyodh@illinois.edu> http://physics.illinois.edu/people/profile.asp?jyodh http://www.cplc.illinois.edu Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] 2/7/13 Seminar with Jonathan Javitch
by Nicole Takesono Flowers 31 Jan '13

31 Jan '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Jonathan Javitch Columbia A tale of two substrates: a novel mechanism for neurotransmiters:sodium symport February 7, 2013 R. Edwards, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: RE: employment offering in biotech
by Tom Ferrin 29 Jan '13

29 Jan '13

-------- Original Message -------- Subject: RE: employment offering in biotech Date: Mon, 28 Jan 2013 19:34:13 +0000 From: Petropoulos, Christos <Petropc(a)labcorp.com> To: Tom Ferrin <tef(a)cgl.ucsf.edu> CC: babbitt(a)cgl.ucsf.edu <babbitt(a)cgl.ucsf.edu> Thanks for your assistance Tom! I am attaching a job description if that helps? CJP -----Original Message----- From: Tom Ferrin [mailto:tef@cgl.ucsf.edu] Sent: Monday, January 28, 2013 10:04 AM To: Petropoulos, Christos Cc: babbitt(a)cgl.ucsf.edu Subject: Re: employment offering in biotech Christos, We have an email distribution list that I would be happy to forward your message to. --tom On 1/27/13 6:23 PM, Petropoulos, Christos wrote: > Dear Dr. Ferrin and Dr. Babbitt, > > > > I am the Chief Scientific Officer of Monogram Biosciences, a > biotechnology company located in South San Francisco. We have an > opening for a scientist in our bioinformatics group and are looking > for qualified candidates. I would like to know if there is a > mechanism for posting this position on your website or an appropriate UCSF website. > > > > Sincerely, > > > > Christos J Petropoulos, PhD > > Chief Scientific Officer, Monogram Biosciences > > Vice President, Laboratory Corporation of America > > > > -This e-mail and any attachments may contain CONFIDENTIAL information, > including PROTECTED HEALTH INFORMATION. If you are not the intended > recipient, any use or disclosure of this information is STRICTLY > PROHIBITED; you are requested to delete this e-mail and any > attachments, notify the sender immediately, and notify the LabCorp > Privacy Officer at privacyofficer(a)labcorp.com or call (877) 23-HIPAA / (877) 234-4722. > -This e-mail and any attachments may contain CONFIDENTIAL information, including PROTECTED HEALTH INFORMATION. If you are not the intended recipient, any use or disclosure of this information is STRICTLY PROHIBITED; you are requested to delete this e-mail and any attachments, notify the sender immediately, and notify the LabCorp Privacy Officer at privacyofficer(a)labcorp.com or call (877) 23-HIPAA / (877) 234-4722.

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[Compbio-allhands] Fwd: [ISBRA-L] Full Professor - Bioinformatics
by Andrej Sali 27 Jan '13

27 Jan '13

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: ISBRA Mailing List <isbra-l(a)dna.engr.uconn.edu> > Subject: [ISBRA-L] Full Professor - Bioinformatics > Date: January 26, 2013 6:08:44 PM PST > To: <sali(a)salilab.org> > Reply-To: <isbrainfo(a)gmail.com> > > > The Department of Computer Science at Georgia State University invites > applications for an anticipated position of Full Professor in the > bioinformatics area beginning Fall Semester 2013, pending budgetary > approval. Earned Ph.D. in Computer Science or a related discipline is > required. An offer of employment will be conditional on background > verification. > > This position is part of a university-wide initiative that is seeking > to hire excellent faculty in several interdisciplinary areas. > Prospective candidates should demonstrate ability to bring national > and international recognition to the department as a center of > excellence for bioinformatics research and education. The hired > applicant is expected to to bring in major extramural funding, mentor > junior faculty, recruit top-quality Ph.D. students, and foster > interdisciplinary research collaborations among faculty in various > departments in GSU. > > Georgia State University, founded in 1913, is a Carnegie RU/VH > (Research University/Very High Research Activity) institution. Located > in the heart of downtown Atlanta, this major research university has > an enrollment of more than 30,000 undergraduate and graduate students > in eight colleges. Georgia State is the second-largest university in > the state, with students coming from every county in Georgia, every > state in the nation, and from over 145 countries. Georgia State > University is currently embarking on a record $1 billion campus > expansion. The Computer Science Department offers programs leading to > the B.S., M.S., and Ph.D. degrees in computer science. Currently, 20 > out of more than 60 Ph.D. students are involved in bioinformatics > research. They are supervised by 10 faculty members fully or > substantially involved in bioinformatics research through > collaboration with Computer Science and Biology faculty. Departmental > computing facilities for research and instruction include a > departmental network of PCs, Unix/Linux workstations, two > interconnected Beowulf clusters, and a 32-processor supercomputer. > The department?s faculty attracts substantial funding from many > federal agencies, including five NSF CAREER Awards. > > Women and minorities are particularly encouraged to apply. Applicants > should send letter of interest, C.V., and three letters of > recommendation to: > > Dr. Yi Pan, Chair > 2CI Bioinformatics > Department of Computer Science > Georgia State University > 34 Peachtree Street, Suite 1450 > Atlanta, Georgia 30303 > > Applications can also be sent via email to search4bio(a)cs.gsu.edu and > will be accepted until position is filled. > > > _______________________________________________ > To modify subscription preferences or unsubscribe from the ISBRA-L mailing list visit http://dna.engr.uconn.edu/cgi-bin/mailman/options/isbra-l/sali%40salilab.org

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[Compbio-allhands] Fwd: Bioinformatics Requisition at ILMN San Diego
by Jacobson, Matt 18 Jan '13

18 Jan '13

Begin forwarded message: From: "Chorny, Ilya" <ichorny(a)illumina.com<mailto:ichorny@illumina.com>> Subject: Bioinformatics Requisition at ILMN San Diego Date: January 18, 2013 8:30:23 AM PST To: "babbitt(a)cgl.ucsf.edu<mailto:babbitt@cgl.ucsf.edu>" <babbitt(a)cgl.ucsf.edu<mailto:babbitt@cgl.ucsf.edu>>, "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>>, "sali(a)salilab.org<mailto:sali@salilab.org>" <sali(a)salilab.org<mailto:sali@salilab.org>> Hi All, The group that I am in is opening up a requisition in the next week or so. If you know anyone that is interested in a genomic bioinformatics position at Illumina in San Diego please have them contact me. Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist II Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny(a)illumina.com<mailto:ichorny@illumina.com> Website: www.illumina.com<http://www.illumina.com/> Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] Fwd: looking for an associate
by Jacobson, Matt 18 Jan '13

18 Jan '13

Begin forwarded message: From: Tack <idkz(a)comcast.net<mailto:idkz@comcast.net>> Subject: Fwd: looking for an associate Date: January 18, 2013 9:53:08 AM PST To: Matt Jacobson <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>>, Brian Shoichet <bshoichet(a)gmail.com<mailto:bshoichet@gmail.com>>, Andrej Sali <sali(a)salilab.org<mailto:sali@salilab.org>> Jose is a former UCSF/Kuntz Group graduate student who is a research analyst based in SF. tack Begin forwarded message: From: "Jose Haresco" <JHaresco(a)jmpsecurities.com<mailto:JHaresco@jmpsecurities.com>> Date: January 17, 2013 1:43:44 PM PST To: "'idkz(a)comcast.net<mailto:'idkz(a)comcast.net>'" <idkz(a)comcast.net<mailto:idkz@comcast.net>> Subject: looking for an associate Hi Tack, I hope this reaches you well. I was wondering if you could pass this on to any late-stage grad students. I'm looking for an associate. Our firm is on a growth trajectory and we are expanding the group. The job description is below. Interested applicants can contact me directly. Sincerely, Jose Title: Associate Equity Research Analyst, Medical-Devices and Molecular Diagnostics Location: San Francisco Keywords: equity analyst, medical devices, sell-side, buy-side, equity research The incumbent will support senior Equity Research Analysts by compiling data and formulating analysis and opinions to be used in buy/sell/hold recommendations. Specific responsibilities include financial model building, competitive analysis, market research, and company research. Candidate must be knowledgeable and proficient in working with clinical trials, researching and summarizing academic journal articles, analyzing scientific data, as well as creating comprehensive financial statements and have the ability to construct bottom-up income statements, balance sheets, and statements of cash flow. Ideally, the candidate will have experience in relevant to the medical device industry. Essential Function/Duties: 1. Develop financial models to forecast growth and profitability opportunities for publicly traded equity investments. This includes financial statement analysis, historical and projected, profitability metrics, margin analysis, and various ratio analyses. Perform valuation analysis such as discounted cash flow analysis, discount models, and other valuation calculations including, but not limited to, earnings, sales, cash flow and tangible book. 2. Assist Analysts with compilation and evaluation of all relevant research and information pertaining to equity investment ideas, their respective markets and their competitors, customers, suppliers and any other entities which might have a meaningful impact on a company’s financial outcomes. Relevant research and information comes from a variety of sources including scientific literature, industry conferences, company filings and meetings with company management, independent research firms, financial news sources and government and industry organizations. 3. Maintain and ensure accuracy of financial models, analyses and archives. Compile clinical research data across specific indications. Synthesize and summarize scientific publications. Provide summary of earnings conference calls to Analysts to assist in evaluating recent company performance. Disseminate information to internal departments as applicable. Minimum Qualifications: • Master's Degree in Bioengineering, Genetics, Nursing, Biostatistics, or a related life science field. Bachelor's degree may be considered if candidate has exceptional work experience in the field of healthcare equity research, clinical research, management consulting, or business development/marketing in healthcare fields • Position requires demonstration of excellent quantitative and analytical skill. While formal training in accounting or finance is not required, the applicant must have substantial experience using Microsoft Excel. • Advanced computer skills using Microsoft Office, with particular expertise in Excel, Word, & Powerpoint Programming experience with C++, Visual Basic, or Python helpful, but not required. • Strong verbal and writing skills. A writing sample will be required Visit us at http://www.jmpsecurities.com<http://www.jmpsecurities.com/> IMPORTANT NOTICES: This message is intended only for the addressee. If you are not the intended recipient, please notify the sender by e-mail reply. Additionally, you may not copy, disclose, distribute or otherwise make use of this message or its contents for yourself or for any other person as that action may be unlawful. ORDERS AND INSTRUCTIONS: JMP Securities ("JMP") does not accept action oriented, time sensitive instructions or transactions orders via e-mail. Such orders and/or instructions will not be accepted by JMP, and JMP will not be responsible for carrying out such orders or instructions, including orders to purchase and sell securities. CONFIDENTIALITY AND PRIVACY: JMP reserves the right to monitor and review the content of all e-mail communications sent and/or received by its employees. Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] 1/24/13 Seminar with Wenying Shou
by Nicole Takesono Flowers 18 Jan '13

18 Jan '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Wenying Shou Fred Hutchinson Cancer Center War and Peace: a biological basis for population segregation and mixing January 24, 2013 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Bioinformatics Requisition at ILMN San Diego
by Andrej Sali 18 Jan '13

18 Jan '13

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: "Chorny, Ilya" <ichorny(a)illumina.com> > Subject: Bioinformatics Requisition at ILMN San Diego > Date: January 18, 2013 8:30:23 AM PST > To: "babbitt(a)cgl.ucsf.edu" <babbitt(a)cgl.ucsf.edu>, "Matt.Jacobson(a)ucsf.edu" <Matt.Jacobson(a)ucsf.edu>, "sali(a)salilab.org" <sali(a)salilab.org> > > Hi All, > > The group that I am in is opening up a requisition in the next week or so. If you know anyone that is interested in a genomic bioinformatics position at Illumina in San Diego please have them contact me. > > Thanks, > > Ilya > > > Ilya Chorny Ph.D. > Bioinformatics Scientist II > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Work: 858.202.4582 > Email: ichorny(a)illumina.com > Website: www.illumina.com > >

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[Compbio-allhands] Fwd: CCL: CSA Trust Grant 2013 - Call for Applications
by Elaine Meng 17 Jan '13

17 Jan '13

Begin forwarded message: > From: "Rajarshi Guha rajarshi.guha . gmail.com" <owner-chemistry(a)ccl.net> > Date: January 16, 2013 1:13:03 PM PST > To: "Meng, Elaine -id#3ma-" <meng(a)cgl.ucsf.edu> > Subject: CCL: CSA Trust CSA Trust Grant 2013 - Call for Applications > Reply-To: "CCL Subscribers" <chemistry(a)ccl.net> > > On behalf of the CSA Trust. (Also see http://www.csa-trust.org/?page_id=9) > > > > Applications Invited for CSA Trust Jacques-Émile Dubois Grants for 2013. > > The Chemical Structure Association (CSA) Trust is an internationally recognized organization established to promote the critical importance of chemical information to advances in chemical research. In support of its charter, the Trust has created a unique Grant Program, renamed in honor of Professor Jacques-Émile Dubois who made significant contributions to the field of cheminformatics. The Trust is currently inviting the submission of grant applications for 2013. > > Purpose of the Grants: > The Grant Program has been created to provide funding for the career development of young researchers who have demonstrated excellence in their education, research or development activities that are related to the systems and methods used to store, process and retrieve information about chemical structures, reactions and compounds. A Grant will be awarded annually up to a maximum of ten thousand U.S. dollars ($10,000). Grants are awarded for specific purposes, and within one year each grantee is required to submit a brief written report detailing how the grant funds were allocated. Grantees are also requested to recognize the support of the Trust in any paper or presentation that is given as a result of that support. > > Who is Eligible? > > Applicant(s), age 35 or younger, who have demonstrated excellence in their chemical information related research and who are developing careers that have the potential to have a positive impact on the utility of chemical information relevant to chemical structures, reactions and compounds, are invited to submit applications. While the primary focus of the Grant Program is the career development of young researchers, additional bursaries may be made available at the discretion of the Trust. All requests must follow the application procedures noted below and will be weighed against the same criteria. > > Which Activities are Eligible? > Grants may be awarded to acquire the experience and education necessary to support research activities; e.g. for travel to collaborate with research groups, to attend a conference relevant to one’s area of research, to gain access to special computational facilities, or to acquire unique research techniques in support of one’s research. > > Application Requirements: > Applications must include the following documentation: > > > A letter that details the work upon which the Grant application is to be evaluated as well as details on research recently completed by the applicant; > The amount of Grant funds being requested and the details regarding the purpose for which the Grant will be used (e.g. cost of equipment, travel expenses if the request is for financial support of meeting attendance, etc.). The relevance of the above-stated purpose to the Trust’s objectives and the clarity of this statement are essential in the evaluation of the application); > A brief biographical sketch, including a statement of academic qualifications; > Two reference letters in support of the application. Additional materials may be supplied at the discretion of the applicant only if relevant to the application and if such materials provide information not already included in items 1-4. Three copies of the complete application document must be supplied for distribution to the Grants Committee. > Deadline for Applications: > Applications must be received no later than March 14, 2013. Successful applicants will be notified no later than May 2, 2013. > > Address for Submission of Applications: > Three copies of the application documentation should be forwarded to: Bonnie Lawlor, CSA Trust Grant Committee Chair, 276 Upper Gulph Road, Radnor, PA 19087, USA. If you wish to enter your application by e-mail, please contact Bonnie Lawlor at blawlor(~)nfais.org prior to submission so that she can contact you if the e-mail does not arrive. > > > > -- > Rajarshi Guha | http://blog.rguha.net > NIH Center for Advancing Translational Science

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[Compbio-allhands] 1/17/13 Comp Together seminar with Prof. Brian Shoichet
by Siegfried Leung 16 Jan '13

16 Jan '13

Talk title: Polypharmacology: A Feature, Not A Bug? Speaker: Prof. Brian Shoichet, UCSF Date: 2013-01-17 Time: 18:00:00 Location: UCSF Mission Bay 600 16th St. Byers Hall, Room 212 San Francisco, CA 94158 Schedule: 6 -- 7 pm: check-in & networking (pizza and wine provided) 7 -- 8 pm: presentation 8 -- 8:30 pm: informal discussions & networking Talk Abstract: Protein classification typically uses structural, sequence, or functional similarity. Here we explore an organization by ligand similarity, focusing on class A GPCRs. Comparing a ligand-based and sequence-based dendograms, we identified GPCRs that were distantly linked by sequence but neighbors by ligand similarity. Experimental testing of the ligands predicted to link three of these new pairs confirmed the predicted association, with potencies ranging from the low-nanomolar to low-micromolar. We also predicted hundreds of non-GPCRs closely related to GPCRs by ligand similarity, including the CXCR2 chemokine receptor to casein kinase I, the cannabinoid receptors to epoxide hydrolase 2, and the ?2 adrenergic receptor to phospholipase D, which we confirmed experimentally. Ligand similarities among these targets may reflect the conservation of identical ligands among unrelated receptors, which signal in different time domains. The method integrates these apparently unrelated receptors into chemically coherent circuits, and suggests which of these receptors may be targeted by individual ligands.

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[Compbio-allhands] BBC Journal Club, January 22nd
by Bass, Karche 16 Jan '13

16 Jan '13

BBC Journal Club BP-BMI-CCB Tuesday, January 22nd, 10:45am-GH Auditorum Patrick Harrigan Lauschke VM., et. al. Scaling of embryonic patterning based on phase-gradient encoding. Nature, 493(7430); 101-5 (2013) Weihan Li Locke JC., et. al. Stochastic Pulse Regulation in Bacterial Stress Response Science. Science, 334(6054):366-9. (2011) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] Fwd: Open Genentech internship position in the Bioinformatics & Computational Biology Department
by Andrej Sali 16 Jan '13

16 Jan '13

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Christina Chaivorapol <chaivorapol.christina(a)gene.com> > Subject: Open Genentech internship position in the Bioinformatics & Computational Biology Department > Date: January 16, 2013 6:31:33 AM GMT+01:00 > To: sali(a)salilab.org > > Hi Andrej, > > Happy New Year. I hope you are doing well. I am looking for a computational biology intern. Could you please circulate the following internship position at UCSF to graduate students who may be interested in a computational biology internship at Genentech? > > Thanks, > Christina > > Opening for a Genentech internship position in the Bioinformatics & Computational Biology department > ---------------------------------- > An internship at Genentech is a great way to get exposure to scientific research in an industry setting and meet industry folks from various departments at Genentech. > > The intern will focus on analyzing a large-scale sequencing data set in patients with lupus (an autoimmune disease that affects millions of people worldwide). The primary goals are to: > 1) compile a database of public non-coding RNAs from various sources > 2) explore existing R statistical methods and/or develop statistical methods to query differential expression of non-coding RNAs > 3) apply the database and the appropriate statistical methods to analyze differences in expression of non-coding RNAs across various subsets to further understand disease pathogenesis > 4) use (if time permits) public and in-house computational methods to understand function and pathways > > Requirements: > 1) Proficiency in high-level programming languages is essential (preferably in R), and a working knowledge of the UNIX operating system and version control systems (e.g. SVN) is desirable > 2) Strong knowledge of biology required, immunology a plus > 3) Experience with next generation sequencing data is preferred > 4) Ph.D. candidate in Computational Biology, Bioinformatics, or related field > > All interested candidates should send their CV to chrichai(a)gene.com. > -- > Christina Chaivorapol, Ph.D. > Genentech, Inc. > Bioinformatics & Computational Biology > phone: 650-225-6903 > chrichai(a)gene.com

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[Compbio-allhands] Junior faculty tenure-track position at U Michigan
by Katrina Lexa 14 Jan '13

14 Jan '13

The University of Michigan Department of Medicinal Chemistry is currently looking to fill two junior positions, and they are particularly interested in someone with a computational chemistry background. For those interested, they would need a CV and proposal by the end of this week. The general advertisement is here: http://umjobs.org/job_detail/75392/asst_professor Katrina Lexa Postdoctoral Fellow, UCSF 408.859.6993 katrina.lexa(a)ucsf.edu

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[Compbio-allhands] 1/17/13 Seminar with David Odde
by Nicole Takesono Flowers 14 Jan '13

14 Jan '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 David Odde University of Minnesota Microtubule self-assembly kinetics January 17, 2013 W. Marshall & D. Mullins, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: AMMA: positions and funding for young researchers
by Andrej Sali 14 Jan '13

14 Jan '13

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Elizabeth Yuriev <Elizabeth.Yuriev(a)monash.edu> > Subject: AMMA: positions and funding for young researchers > Date: January 14, 2013 5:02:26 AM GMT+01:00 > Cc: "RecruitmentTeam-VIC(a)csiro.au" <RecruitmentTeam-VIC(a)csiro.au> > > Dear AMMA members, > > Happy New Year to you all. > > Please see below for: > > 1. CSIRO Graduate Fellow Program 2013 – positions in Sydney, Melbourne and Perth (Applications Close: 23 January 2013) > http://csiro.nga.net.au/?jati=d251656b-4a4d-5dac-42f7-6e3e5f1aa6c3 > > 2. CSA Trust Grant > See attachment > > Cheers, > Elizabeth > > ************ > Dr Elizabeth Yuriev > Senior Lecturer > Faculty of Pharmacy and Pharmaceutical Sciences > Medicinal Chemistry and Drug Action > Monash Institute of Pharmaceutical Sciences > Monash University (Parkville Campus) > 381 Royal Parade, Parkville VIC 3052, Australia > Tel: Int +61 3 9903 9611, Fax: +61 3 9903 9143 > E-mail: elizabeth.yuriev(a)monash.edu > www.pharm.monash.edu.au >

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[Compbio-allhands] Michael Grabe
by Jacobson, Matt 11 Jan '13

11 Jan '13

All, Michael Grabe from Pitt is doing a sabbatical here at UCSF, hosted by Bill DeGrado ... just want to make sure everyone knows this, so relevant people can interact with him. Research interests in computational membrane biophysics (roughly speaking) http://mgrabe1.bio.pitt.edu/publications.html I've cc'ed him here in case you want to contact him -- Matt Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] BBC Journal Club, January 15th
by Bass, Karche 09 Jan '13

09 Jan '13

BBC Journal Club, January 15th, 10:45 am Genentech Hall Auditorium Juan Perez Bermejo Hayashi, K., et. al. "For a fistful of frost." Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells. Cell, 146, pp. 519-532. (2011) Diego Garrido Ruiz Gorbunova , V. et. al. Cancer resistance in the blind mole rat is mediated by concerted necrotic cell death mechanism. PNAS, vol. 109 no. 47 19392-19396. (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles Craik, Susan Miller, Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0943 | 7: 415-502-4690 | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] 1/10/13 Seminar with Susan Marqusee
by Nicole Takesono Flowers 04 Jan '13

04 Jan '13

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Susan Marqusee UC Berkeley Sequence Determinants of a Protein's Energy Landscape January 10, 2013 H. Lim, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] BBC Journal Club, January 8th
by Bass, Karche 02 Jan '13

02 Jan '13

BBC Journal Club BP-BMI-CCB Tuesday, January 8th, 10:45am-GH Auditorium Alex Pankov Weeden, VJ, et. al. The Geometric Structure of the Brain Fiber Pathways. Science, Volume 335, No. 6076, pp. 1628-1634 (2012) Kate Southard Bacchus, W., et. al. Synthetic two-way communication between mammalian cells. Nature Biology, vol. 30 ,pp. 991-996 (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] Fwd: open rank faculty position
by Andrej Sali 22 Dec '12

22 Dec '12

Sent from my iPhone Begin forwarded message: > From: Sergei Sheiko <sergei(a)email.unc.edu> > Date: December 22, 2012, 7:16:56 AM PST > To: Sergei Sheiko <sergei(a)email.unc.edu>, s.sacanna(a)nyu.edu, s.t.meikle(a)bton.ac.uk, s72k(a)hotmail.com, sa.ravishankar(a)cytec.com, sa454(a)georgetown.edu, saadink(a)umd.edu, saarloos(a)lorentz.leidenuniv.nl, saavedra(a)u.arizona.edu, sabatini(a)ou.edu, Sabine.Klapp(a)fluids.tu-berlin.de, sabrinaleslie(a)gmail.com, saburo(a)ph.tokushima-u.ac.jp, sac12(a)meadwestvaco.com, sacarter(a)ucsc.edu, sachdev(a)physics.harvard.edu, sachiko(a)phys.chs.nihon-u.ac.jp, sachinkinge(a)yahoo.com, sadhal(a)usc.edu, sae6z(a)virginia.edu, saeed.mohseni(a)wacker.com, saeedt(a)ucr.edu, safinya(a)mrl.ucsb.edu, safinyaweb(a)mrl.ucsb.edu, sagisaka(a)cc.hirosaki-u.ac.jp, saika(a)mun.ca, sakurada(a)apchem.gifu-u.ac.jp, sal2(a)emory.edu, saleh(a)engineering.ucsb.edu, sali(a)salilab.org, salis(a)psu.edu, salsbufr(a)wfu.edu > Subject: open rank faculty position > > Dear Colleagues, > > The Department of Chemistry at the University of North Carolina-Chapel Hill invite applications for an open rank faculty position. Areas of interest include bio-inspired materials, polymers, colloids, gels, rheology, and scattering. We would appreciate you very much if you forward this email to your colleagues, students, and postdocs who might be interested in this position. Review of applications will begin in January 2013. > > Applicants should submit a SINGLE PDF containing a cover letter, curriculum vita, research plan, and teaching statement to: http://jobs.unc.edu/2501212. Applicants should also arrange to have four pdf letters of recommendation sent electronically to chemsearch(a)unc.edu with a subject line Applied Sciences Search. > > Sincerely Yours, > > Sergei > > ______________________________________ > > Sergei S. Sheiko, PhD. > George A. Bush Jr. Distinguished Professor > Department of Chemistry CB# 3290, Caudill Laboratories, Rm. 157 > University of North Carolina at Chapel Hill Chapel Hill, NC 27599-3290 > OFFICE: (919) 843-5270 > FAX: (919) 962-2388 > E-MAIL:sergei@email.unc.edu > http://www.chem.unc.edu/people/faculty/sheikoss/sssindex.html

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[Compbio-allhands] Fwd: Oxford Summer Project 2013
by Andrej Sali 18 Dec '12

18 Dec '12

Sent from my iPhone Begin forwarded message: > From: Madeline Mitchell <madeline.mitchell(a)stats.ox.ac.uk> > Date: December 18, 2012, 7:33:15 AM PST > To: "maddy mitchell (mitchell(a)stats.ox.ac.uk)" <mitchell(a)stats.ox.ac.uk> > Subject: Oxford Summer Project 2013 > > Dear Colleague > I should be grateful if you could please pass the attached information on to anyone you think might be interested. > Many thanks > Maddy > (on behalf of Professor Jotun Hein) > > P.S. I apologise for any cross-posting > > > > We are looking for summer students to join us in a project-based summer school in Computational Biology, taking place from 8th July – 16th August 2013. > > Applications are invited from students with a strong background in mathematics, statistics, computer science, physics or chemistry, who have completed at least two years of undergraduate study. > > For more information see the attached flyer, and visit www.stats.ox.ac.uk/research/genome/summer_school > > Kind regards > > > Maddy > > Madeline Mitchell > PA to Professor Jotun Hein, Professor Chris Holmes & > Group Secretary, (Professor Peter Donnelly FRS FMedSci (WTCHG): PA +44 1865 287725) > Department of Statistics > University of Oxford > 1 South Parks Road > Oxford OX1 3TG > tel. (0)1865 285386: fax. (0)1865 285384 > email: mitchell(a)stats.ox.ac.uk > www.stats.ox.ac.uk > > >

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[Compbio-allhands] Fwd: [3dem] two positions available in computational electron cryo-microscopy
by Andrej Sali 18 Dec '12

18 Dec '12

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: <martyn.winn(a)stfc.ac.uk> > Subject: [3dem] two positions available in computational electron cryo-microscopy > Date: December 18, 2012 2:15:52 AM PST > To: <3dem(a)ncmir.ucsd.edu> > > The Research Complex at Harwell, Oxfordshire, UK hosts a growing number of computational scientists supporting a wide range of structural biology research. We have two vacancies for enthusiastic scientists with experience of computational methods to join the group. You will join one of two projects, both concerned with exploiting the recent growth in the application of electron cryo-microscopy (cryo-EM) to structural and cellular biology. > > Post 1: The European infrastructure project BioMedBridges (http://www.biomedbridges.eu) is constructing an e-infrastructure to allow interoperability between data and services in the biological, medical, translational and clinical domains. This post will contribute to Work Package 9 of Biomedbridges, which is a Use Case illustrating sharing of cryoEM data between structural biologists and biological database providers. You will create software for analysing, comparing and annotating cryoEM maps, in collaboration with developers at the EBI. > > Post 2: We seek an experienced scientist with an interest in software development, to work alongside the current project developer, on the Collaborative Computational Project for cryoEM (http://www.ccpem.ac.uk) You will be responsible for developing the CCP-EM software suite, in collaboration with application developers in the consortium, as well as developing and promoting community standards. > > Both posts will be located at the Research Complex at Harwell, within the Computational Biology group of Martyn Winn in the Scientific Computing Department of STFC. Further information is available online (see http://www.ccpem.ac.uk/positions.php and links to TopCareer site), and informal enquiries may be made to Martyn Winn martyn.winn(a)stfc.ac.uk > > * > * Dr. Martyn Winn > * STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. > * Tel: +44 1925 603455 (DL) or +44 1235 567865 (RcaH) > * E-mail: martyn.winn(a)stfc.ac.uk Skype: martyn.winn > * > > > > -- > Scanned by iCritical. > _______________________________________________ > 3dem mailing list > 3dem(a)ncmir.ucsd.edu > https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem

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[Compbio-allhands] SAVE THE DATE- PETER A. KOLLMAN LECTURESHIP - February 14, 2013
by Nicole Takesono Flowers 17 Dec '12

17 Dec '12

SAVE THE DATE- THURSDAY, FEBRUARY 14, 2013 AT 12:00PM PETER A. KOLLMAN LECTURESHIP GENENTECH HALL BYERS AUDITORIUM - UCSF MISSION BAY CAMPUS SIMULCAST TO PARNASSUS. ROOM S161 Reception in Byers Hall 5th Floor Lounge at 3:30 Please see attached flyer. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Open Positions: ELBE Postdoc Program in Dresden
by Andrej Sali 30 Nov '12

30 Nov '12

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Gene Myers <myers(a)mpi-cbg.de> > Subject: Open Positions: ELBE Postdoc Program in Dresden > Date: November 30, 2012 6:38:35 AM PST > To: undisclosed-recipients:; > > Dear colleague, > > The Max-Planck Institute for Molecular Cell Biology and Genetics (MPI-CBG) and the MPI for the Physics of Complex Systems (MPI-PKS) in Dresden have formed a new Systems Biology Center that is particularly focused on combining genomics, image-based, and bio-physical approaches. > We are beginning the first cycle of a fully-funded postdoctoral program and are seeking applicants. > > We kindly ask you to bring the attached one-page announcement to the attention of your students. > > Best regards, > Gene Myers > Founding Director, The Systems Biology Center at Dresden > > > Dr. Gene Myers, Director > Tschira Chair of Systems Biology > Max-Planck Institute of > Molecular Cell Biology & Genetics > Pfotenhauerstr. 108 > 01307 Dresden > > Tel: +49 351 210-1220 > Fax: +49 351 210-1209 > > > > >

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[Compbio-allhands] BBC Journal Club, December 4th
by Bass, Karche 29 Nov '12

29 Nov '12

BBC Journal Club BP-BMI-CCB Tuesday, December 4th at 10:45am-GH Auditorium Tara Friedrich Schmidt D, et. al. Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages. Cell, Volume 148, Issue 1, 335-348 (2012) Kay Aull Zhang Y, et. al. Structural Basis of Transcription Initiation. Science, vol. 338 no. 6110 pp. 1076-1080 (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] Nodality is hiring...
by Schnoes, Alexandra 26 Nov '12

26 Nov '12

FYI, Nodality, who just hired Alan Barber from the Babbitt lab (and has at least two other UCSF alums that I know of) is looking for a computational biologist/bioinformatics scientist. http://www.nodality.com/company/careers/openings/scientist-bioinformatics.p… -- Alexandra Schnoes, PhD Program Coordinator Graduate Student Internships for Career Exploration (GSICE) University of California San Francisco 513 Parnassus Ave, S-224 Campus Box 0410 San Francisco, CA 94143 Tel: 415-476-0572 Fax: 415-476-0689 Email: alexandra.schnoes(a)ucsf.edu<mailto:alexandra.schnoes@ucsf.edu> Web: http://gsice.ucsf.edu<http://gsice.ucsf.edu/>

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[Compbio-allhands] 11/29/12 Seminar with Sunny Xie
by Nicole Takesono Flowers 26 Nov '12

26 Nov '12

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Sunny Xie Harvard University Life at the Single Molecule Level November 29, 2012 D. Burkhardt, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] BBC Journal Club, November 27th
by Bass, Karche 21 Nov '12

21 Nov '12

BBC Journal Club BP-BMI-CCB November 27th at 10:45am in GH Auditorium Nicole Olson Choi, I., et. al. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature, 488, pp. 621-626 (30 August 2012) Jack Yue Bencherif SA, et. al. Injectable preformed scaffolds with shape-memory properties. Proc Natl, (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] 11/28/12 Seminar with Greg Verdine **OFF DATE & TIME**
by Nicole Takesono Flowers 21 Nov '12

21 Nov '12

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems 4 pm Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Greg Verdine Harvard University Cancer Chemical Biology Wednesday, November 28, 2012 J. Wells, Host **Please note this is an off date and time seminar** BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: PhD position in bioinformatics
by Andrej Sali 20 Nov '12

20 Nov '12

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: damien.devos(a)cos.uni-heidelberg.de > Subject: PhD position in bioinformatics > Date: November 20, 2012 7:33:42 AM PST > To: Michael.Rout(a)rockefeller.edu, sali(a)salilab.org, mfiedl(a)mac.com > Cc: avalencia(a)cnio.es > > Dear colleagues, thanks to publicize the available position in my lab, purely in bioinformatics: > > https://hbigs.system08.de/intern/projectspub_project_for.php?a=030000294000… > > Please let me know if you know anyone that could be interested. > Best wishes > > Damien > > **************** > Damien Devos > Center of Organismal Studies > Ruprecht-Karls-Universitat > Im Neuenheimer Feld 230 > 69120 Heidelberg, Germany > Tel: +49 (0) 6221 546254 > > > >

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[Compbio-allhands] Fwd: Research Cluster Grant Announced by Silicon Mechanics
by Tom Ferrin 15 Nov '12

15 Nov '12

From: Art Mann <research-grant(a)siliconmechanics.net<mailto:research-grant@siliconmechanics.net>> Reply-To: Art Mann <research-grant(a)siliconmechanics.net<mailto:research-grant@siliconmechanics.net>> Date: Monday, November 12, 2012 11:09 AM To: Jeff Bluestone <jeff.bluestone(a)ucsf.edu<mailto:jeff.bluestone@ucsf.edu>> Subject: Research Cluster Grant Announced by Silicon Mechanics Silicon Mechanics Announces Our Second Annual Research Cluster Grant We are pleased to again announce our sponsorship of a unique grant opportunity: A complete High Performance Compute Cluster using the latest AMD Opteron processors and NVIDIA GPUs Silicon Mechanics, a leading manufacturer of rackmount servers, storage systems, and high-performance computing solutions, is dedicated to building relationships and collaborating with professors and researchers at universities and other research institutions Last year’s Research Cluster Grant recipient, Saint Louis University, is already making productive use of their cluster, www.siliconmechanics.com/i43744/research-cluster-grant-winners-circle.php<http://www.siliconmechanics.com/i43744/research-cluster-grant-winners-circl…> This grant program is open to all US and Canadian qualified post-secondary institutions, university-affiliated research institutions, non-profit research institutions, and researchers at federal labs with university affiliations. Submissions will be reviewed for merit and related impacts. Further details on the grant rules and the technical specifications of the cluster itself are available at: http://www.siliconmechanics.com/i43822/Research+Cluster+Grant+Information.p… We hope you will consider this opportunity to support your research by submitting a proposal, or by forwarding this to others in your department who could benefit through this grant. If you have any questions, please do not hesitate to contact us at research-grant(a)siliconmechanics.com<mailto:research-grant@siliconmechanics.com>. Best regards, Art Mann Education/Research/Gov't Vertical Group Manager Silicon Mechanics 425-420-1285 artm(a)siliconmechanics.com<mailto:artm@siliconmechanics.com> Silicon Mechanics wishes to thank our partners who have helped make this grant possible: AMD · NVDIA · Mellanox · Supermicro · Seagate · Kingston Technology · Bright Computing <http://www.siliconmechanics.com/i42364/Lunch+and+Learn+Registration.php> This message was sent to you by Silicon Mechanics. We are located at 22029 23rd Dr SE, Bothell WA 98021. If you would prefer not to get any further mailings, please click here<https://www.siliconmechanics.com/mailtool/unsub.php?magic=ykrFfdI1iN1SWsyel…>.

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[Compbio-allhands] BBC Journal Club, November 20th
by Bass, Karche 14 Nov '12

14 Nov '12

BBC Journal Club BP-BMI-CCB Tuesday, November 20th, 10:45am; Genentech Hall Auditorium Ben Spangler Mi Hyeon Cho, et. al., A magnetic switch for the control of cell death signaling in in vitro and in vivo systems. Nature Materials DOI: 10.1038/NMAT3430; (2012) Peter Fellowes Cambell, KL, et. al., Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance. Nature Genetics: 42(6):536-40; (2010) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] 11/15/12 Seminar with Robert Lamb
by Nicole Takesono Flowers 09 Nov '12

09 Nov '12

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Robert Lamb Northwestern University Activating protein re-folding to cause paramyxovirus-mediated membrane fusion November 15, 2012 W. DeGrado, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] BBC Journal Club, November 13th
by Bass, Karche 07 Nov '12

07 Nov '12

BBC Journal Club (BP-BMI-CCB) Tuesday, November 13th at 10:45am in GH Auditorium Amy Chang Douglas, S.m., et. al., A logic-gated nanorobot for targeted transport of molecular payloads. Science. 335(6070):831-4; (2012) Daniel Hemmelstein Reid, C.R., et. al, Slime mold uses an externalized spatial "memory" to navigate in complex environments. Proc Natl Acad Sci U S A. 109(43):17490-4 (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles Craik, Susan Miller, Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0943 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] 11/8/12 Seminar with Doug Lauffenberger
by Nicole Takesono Flowers 02 Nov '12

02 Nov '12

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Doug Lauffenberger MIT In Vivo Systems Analysis of Cell-Cell Communication and Signaling in Inflammation November 8, 2012 K. Giacomini, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Insight Data Science Fellows Program - applications open for 2013
by Schnoes, Alexandra 01 Nov '12

01 Nov '12

The Insight Data Science Fellows Program is accepting applications for its second season. ===================== Insight Data Science Fellows Program Applications now open for 2013 http://insightdatascience.com<http://insightdatascience.com/> Silicon Valley technology companies are hiring data scientists to help them glean insights from the terabytes of data that they collect everyday. The Insight Data Science Fellows Program<http://insightdatascience.com/> is a postdoctoral training fellowship designed to bridge the gap between academia and a career in data science. Insight highlights: * 6 week fellowship in Palo Alto, CA includes tuition scholarship and a $5,000 living expense reimbursement. * 100% placement rate for Insight Fellows who completed job search in 2012. * Insight Fellows are now data scientists at LinkedIn, Facebook, Google, Twitter, Square, Microsoft and other top tech companies. For more information and to apply for the January, June and August 2013 sessions, please visit: http://insightdatascience.com<http://insightdatascience.com/> ===================== Please feel free to forward this to any appropriate mailing lists or to anyone who might be a good candidate for the Fellows Program. Also, if anyone has any questions please have them email me directly at jake(a)insightdatascience.com<mailto:jake@insightdatascience.com>. Many thanks, Jake --- Jake Klamka Founder, Insight

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Re: [Compbio-allhands] Visit from Jerry Tsai
by Jacobson, Matt 01 Nov '12

01 Nov '12

Forwarding this to the compbio listserv -- Matt Sent from my iPad On Nov 1, 2012, at 4:35 PM, "Brett T. Hannigan" <brett.hannigan(a)gmail.com<mailto:brett.hannigan@gmail.com>> wrote: Hi Dr. Jacobson, Dr. Sali, and Dr. Kortemme, I'm a PhD student in the DeGrado lab, and just wanted to let you guys know of a seminar that we have planned for next Tuesday, November 6th and 10:00 am. We will be hosting Dr. Jerry Tsai from the University of the Pacific, and he will be delivering a talk titled "An Amino Acid Code for Protein Structure." You can find his lab's website here: http://tsailab.chem.pacific.edu/ The seminar is currently scheduled to be held on the first floor of CVRI, in room SC159. We'd love to see anyone from your lab that is interested in coming. -Brett -- ****************************************** Brett T. Hannigan Belmont, CA brett.hannigan(a)gmail.com<mailto:brett.hannigan@gmail.com> ******************************************

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[Compbio-allhands] BBC Journal Club, November 6th
by Bass, Karche 31 Oct '12

31 Oct '12

BBC Journal Club (Tuesday, November 6- 10:45 am - GH Auditorium) Greg Fedewa Borodovka A., et. al., Evidence that viral RNAs have evolved for efficient, two-stage packaging. PNAS; vol 109 no. 39; (2012) Louise Goupil Frei AP., et. al,. Direct identification of ligand-receptor interactions on living cells and tissues. Frei et al. Nature Biotechnol; doi: 10.1038/nbt.2354; (2012) Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles Craik, Susan Miller, Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0943 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] Fwd: Postdoc position "Data Analysis" open at EMBL
by Andrej Sali 26 Oct '12

26 Oct '12

Sent from my iPhone Begin forwarded message: > From: Nina Papritz <assocdir(a)embl.org> > Date: October 25, 2012, 4:43:29 AM PDT > Cc: Matthias Hentze <hentze(a)embl.de>, Wolfgang Huber <whuber(a)embl.de> > Subject: Postdoc position "Data Analysis" open at EMBL > > Dear colleague, > > In my group at EMBL, we have a very interesting opening for a post-doc in the area of data analysis (see attached). The successful candidate will be included into the "wet-lab" projects of the Hentze group and be co-mentored by Wolfgang Huber. > > I would be very grateful if you could forward the ad to people that might be interested in such a position. > > Please feel free to contact me in case you have questions. > > Thank you very much! > > With kind regards, > Matthias > > > -- > Prof. Matthias W. Hentze, M.D. > Associate Director > European Molecular Biology Laboratory (EMBL) > Meyerhofstrasse 1 > 69117 Heidelberg > Germany > Tel: +49-(0)6221-387 8501 > Fax: +49-(0)6221-387 8144 > E-mail: hentze(a)embl.de

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[Compbio-allhands] BBC Journal Club, October 30th
by Bass, Karche 24 Oct '12

24 Oct '12

[BBC Journal Club] [BP * BMI * CCB] [Tuesday, October 30- 10:45 am - GH Auditorium] [Ben Heineike Thurman RE, et al. The accessible chromatin landscape of the human genome. Nature. 489(7414):75-82. doi: 10.1038/nature11232. 2012. Kyle Kundert Shiou Tzeng, et. al. Protein activity regulation by conformational entropy. Nature 488:236-240. 2012.] Karché K. Bass Karché K. Bass | Administrative Analyst Asst. to John D. Gross, Charles S. Craik, Susan Miller, and Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0523 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] 10/24/12 Braisted Lecture with Stuart Schreiber
by Nicole Takesono Flowers 19 Oct '12

19 Oct '12

UCSF-UCB Andrew Braisted Award Lectureship Stuart Schreiber, Ph.D. Howard Hughes Medical Institute Broad Institute of Harvard & MIT Harvard University, Department of Chemistry & Chemical Biology Cancer genetic dependencies targeted by small molecules Wednesday, October 24, 2010 4 pm Genentech Hall Byers Auditorium UCSF Mission Bay Campus Simulcast to Parnassus, Room 161 Reception in 1st Floor Atrium following talk Contact: Jim Wells, Charles Craik Sponsor: The Andrew Braisted Lecture Fund Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] BBC Journal Club, October 23
by Bass, Karche 17 Oct '12

17 Oct '12

[BBC Journal Club] [BP * BMI * CCB] [Tuesday, October 23- 10:45 am - GH Auditorium] John Haliburton Thomas E Kuhlman, et. al. Gene location and DNA density determine transcription factor distributions in Escherichia coli. Molecular Systems Biology 8; 610; doi:10.1038/msb2012.42. 2012. Jordan Carelli Winter, GE., et. al. Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML. Nat Chem Biol. doi: 10.1038/nchembio.1085. 2012. Karché K. Bass Karché K. Bass | Administrative Assistant Asst. to John D. Gross, Charles Craik, Susan Miller, Thomas James Department of Pharmaceutical Chemistry Administration; Box 2280 | University of California, San Francisco 600 16th Street, Suite 512 (5th Floor) | San Francisco, CA *: 415-502-0943 | 7: | *: Karche.Bass(a)ucsf.edu<mailto:Karche.Bass@ucsf.edu>

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[Compbio-allhands] Greg Bowman seminar, Monday Oct. 22, 10-11am: "Decrypting cryptic allosteric sites"
by David Sivak 17 Oct '12

17 Oct '12

Greg Bowman "Decrypting cryptic allosteric sites" Monday, Oct 22, 10-11am Genentech S204 Abstract: Cryptic allosteric sites--pockets in a folded protein that are invisible to conventional experiments but can alter enzymatic activity via allosteric communication with the active site--are a promising opportunity for facilitating drug design by greatly expanding the repertoire of available drug targets. Unfortunately, identifying these sites is difficult, typically requiring resource intensive screening of large libraries of small molecules. I will present recent advances in using Markov state models built from extensive computer simulations (totaling hundreds of microseconds of dynamics) to identify prospective cryptic sites from the equilibrium fluctuations of proteins like β-lactamase in the absence of any ligands. This approach reveals extensive conformational heterogeneity in folded proteins that could give rise to cryptic sites. Based on this observation, I hypothesized that cryptic sites should appear as high-energy (or low population) pockets adjacent to residues displaying correlated motions with the active site. I will show that these ingredients are sufficient to retrodict a known cryptic site in β-lactamase and, more importantly, predict the existence of a multitude of new sites. Finally, I will present the results of experimental tests supporting the existence of my new sites. Personal Web site: https://sites.google.com/site/gregoryrbowman/ -- David Sivak Systems Biology Fellow University of California, San Francisco david.sivak(a)gmail.com davidsivak.com 510-541-9006

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[Compbio-allhands] Fwd: On Behalf of Taekjip Ha and Klaus Schulten - PLEASE POST AND CIRCULATE
by Andrej Sali 15 Oct '12

15 Oct '12

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: "Flanegin, Susan A" <flanegin(a)illinois.edu> > Subject: On Behalf of Taekjip Ha and Klaus Schulten - PLEASE POST AND CIRCULATE > Date: October 15, 2012 10:04:08 AM PDT > To: "Flanegin, Susan A" <flanegin(a)illinois.edu> > Cc: "Yodh, Jaya G" <jyodh(a)illinois.edu>, "ralf.blossey(a)iri.univ-lille1.fr" <ralf.blossey(a)iri.univ-lille1.fr>, "ralf.seidel(a)biotec.tu-dresden.de" <ralf.seidel(a)biotec.tu-dresden.de>, "rama.ranganathan(a)utsouthwestern.edu" <rama.ranganathan(a)utsouthwestern.edu>, "Rao, Christopher V" <cvrao(a)illinois.edu>, "rao(a)cua.edu" <rao(a)cua.edu>, "rappel(a)physics.ucsd.edu" <rappel(a)physics.ucsd.edu>, "irasnik(a)physics.emory.edu" <irasnik(a)physics.emory.edu>, "ratner(a)northwestern.edu" <ratner(a)northwestern.edu>, "reevesme(a)gwu.edu" <reevesme(a)gwu.edu>, "lynne.regan(a)yale.edu" <lynne.regan(a)yale.edu>, "ribbeck(a)mit.edu" <ribbeck(a)mit.edu>, "ebright(a)waksman.rutgers.edu" <ebright(a)waksman.rutgers.edu>, "R.Bowater(a)uea.ac.uk" <R.Bowater(a)uea.ac.uk>, "anne.ridley(a)kcl.ac.uk" <anne.ridley(a)kcl.ac.uk>, "drissin(a)quanterix.com" <drissin(a)quanterix.com>, "kpritchie(a)purdue.edu" <kpritchie(a)purdue.edu>, "erittwe(a)gwdg.de" <erittwe(a)gwdg.de>, "mr(a)jhu.edu" <mr(a)jhu.edu>, "rw144(a)le.ac.uk" <rw144(a)le.ac.uk>, "susana.rocha(a)chem.kuleuven.be" <susana.rocha(a)chem.kuleuven.be>, "rodionov(a)nso.uchc.edu" <rodionov(a)nso.uchc.edu>, "srogers(a)bio.unc.edu" <srogers(a)bio.unc.edu>, "Antonina(a)mail.nih.gov" <Antonina(a)mail.nih.gov>, "r.tuma(a)leeds.ac.uk" <r.tuma(a)leeds.ac.uk>, "chalmers(a)nottingham.ac.uk" <chalmers(a)nottingham.ac.uk>, "michael.rosen(a)utsouthwestern.edu" <michael.rosen(a)utsouthwestern.edu>, "joel.rosenbaum(a)yale.edu" <joel.rosenbaum(a)yale.edu>, "jody.rosenblatt(a)hci.utah.edu" <jody.rosenblatt(a)hci.utah.edu>, "sr2327(a)columbia.edu" <sr2327(a)columbia.edu>, "rross(a)ucsd.edu" <rross(a)ucsd.edu>, "Eli.Rothenberg(a)nyumc.org" <Eli.Rothenberg(a)nyumc.org>, "rottapel(a)uhnres.utoronto.ca" <rottapel(a)uhnres.utoronto.ca>, "a.round(a)uea.ac.uk" <a.round(a)uea.ac.uk>, "roux(a)uchicago.edu" <roux(a)uchicago.edu>, "rouzi002(a)umn.edu" <rouzi002(a)umn.edu>, "ruderman(a)hms.harvard.edu" <ruderman(a)hms.harvard.edu>, "rudner(a)hms.harvard.edu" <rudner(a)hms.harvard.edu>, "rudy(a)wustl.edu" <rudy(a)wustl.edu>, "rueda(a)chem.wayne.edu" <rueda(a)chem.wayne.edu>, "valya(a)ou.edu" <valya(a)ou.edu>, "saffarian(a)physics.utah.edu" <saffarian(a)physics.utah.edu>, "safinya(a)mrl.ucsb.edu" <safinya(a)mrl.ucsb.edu>, "Sam.Safran(a)weizmann.ac.il" <Sam.Safran(a)weizmann.ac.il>, "saikrishnan(a)iiserpune.ac.in" <saikrishnan(a)iiserpune.ac.in>, "isaito(a)ims.u-tokyo.ac.jp" <isaito(a)ims.u-tokyo.ac.jp>, "ksogawa(a)riken.jp" <ksogawa(a)riken.jp>, "saleh(a)engineering.ucsb.edu" <saleh(a)engineering.ucsb.edu>, "sali(a)salilab.org" <sali(a)salilab.org>, "hsalman(a)pitt.edu" <hsalman(a)pitt.edu>, "tsalmon(a)email.unc.edu" <tsalmon(a)email.unc.edu>, "azadeh(a)brandeis.edu" <azadeh(a)brandeis.edu>, "samuel(a)physics.harvard.edu" <samuel(a)physics.harvard.edu>, "h.sanchezgonzalez(a)erasmusmc.nl" <h.sanchezgonzalez(a)erasmusmc.nl>, "tsanden(a)kth.se" <tsanden(a)kth.se>, "sandler(a)microbio.umass.edu" <sandler(a)microbio.umass.edu>, "vahid.sandoghdar(a)phys.chem.ethz.ch" <vahid.sandoghdar(a)phys.chem.ethz.ch>, "sangerjo(a)upstate.edu" <sangerjo(a)upstate.edu>, "mark.sansom(a)bioch.ox.ac.uk" <mark.sansom(a)bioch.ox.ac.uk>, "s.a.stratmann(a)rug.nl" <s.a.stratmann(a)rug.nl>, "s.miles(a)bristol.ac.uk" <s.miles(a)bristol.ac.uk>, "sarkarsk(a)mail.nih.gov" <sarkarsk(a)mail.nih.gov>, "ycsasaki(a)spring8.or.jp" <ycsasaki(a)spring8.or.jp>, "shs(a)chem.psu.edu" <shs(a)chem.psu.edu>, "dschlaepfer(a)ucsd.edu" <dschlaepfer(a)ucsd.edu>, "schlick(a)nyu.edu" <schlick(a)nyu.edu>, "schlierf(a)bcube-dresden.de" <schlierf(a)bcube-dresden.de>, "slschmid(a)scripps.edu" <slschmid(a)scripps.edu>, "jmscholey(a)ucdavis.edu" <jmscholey(a)ucdavis.edu>, "tschroe1(a)jhem.jhu.edu" <tschroe1(a)jhem.jhu.edu>, "daniel.schwartz(a)colorado.edu" <daniel.schwartz(a)colorado.edu>, "Ulrich.Schwarz(a)kit.edu" <Ulrich.Schwarz(a)kit.edu>, "jschwarz(a)princeton.edu" <jschwarz(a)princeton.edu>, "schwille(a)biotec.tu-dresden.de" <schwille(a)biotec.tu-dresden.de>, "dschwinn(a)uw.edu" <dschwinn(a)uw.edu>, "giorgio.scita(a)ifom-ieo-campus.it" <giorgio.scita(a)ifom-ieo-campus.it>, "ned.seeman(a)nyu.edu" <ned.seeman(a)nyu.edu>, "segall(a)aecom.yu.edu" <segall(a)aecom.yu.edu>, "cseidel(a)hhu.de" <cseidel(a)hhu.de>, "Selvin, Paul R" <selvin(a)illinois.edu>, "anirvan(a)physics.rutgers.edu" <anirvan(a)physics.rutgers.edu>, "dsept(a)biomed.wustl.edu" <dsept(a)biomed.wustl.edu>, "simas(a)indiana.edu" <simas(a)indiana.edu>, "sethna(a)lassp.cornell.edu" <sethna(a)lassp.cornell.edu>, "gseydoux(a)jhmi.edu" <gseydoux(a)jhmi.edu>, "shaevitz(a)princeton.edu" <shaevitz(a)princeton.edu>, "profss(a)yahoo.com" <profss(a)yahoo.com>, "lawrenceshapiro3(a)gmail.com" <lawrenceshapiro3(a)gmail.com>, "shapiro(a)convex.hhmi.columbia.edu" <shapiro(a)convex.hhmi.columbia.edu>, "sishaw(a)indiana.edu" <sishaw(a)indiana.edu>, "shea(a)chem.ucsb.edu" <shea(a)chem.ucsb.edu>, "ms2001(a)columbia.edu" <ms2001(a)columbia.edu>, "jpshen(a)phys.sinica.edu.tw" <jpshen(a)phys.sinica.edu.tw>, "david.sherratt(a)bioch.ox.ac.uk" <david.sherratt(a)bioch.ox.ac.uk>, "William_Shih(a)dfci.harvard.edu" <William_Shih(a)dfci.harvard.edu>, "shnerbn(a)mail.biu.ac.il" <shnerbn(a)mail.biu.ac.il>, "shubeita(a)chaos.utexas.edu" <shubeita(a)chaos.utexas.edu>, "kshukla(a)nsf.gov" <kshukla(a)nsf.gov>, "stas(a)princeton.edu" <stas(a)princeton.edu> > > > Dear Colleagues, > We are writing to inform you of several postdoctoral fellowship opportunities for the coming academic year, starting September 2013, in experimental and theoretical biophysics in the "Center for the Physics of Living Cells" (CPLC), a National Science Foundation Physics Frontier Center at the University of Illinois, Urbana-Champaign. > > Research in the Center falls in one of four themes: > (1) Maximizing information content of single molecule experiments; > (2) Using synthetic nanostructures to mimic cellular environments; > (3) Observing individual events within single cells; > (4) Extending computation to biologically relevant timescales, and theory to greater biological realism. > > Fellows will be using state-of-the-art experimental and theoretical biophysical tools to accomplish these goals: optical tweezers, single-molecule and super-resolution fluorescence microscopy, fabrication of synthetic nanostructure, live cell imaging, chemical biology and genomic biology tools, microscopic and coarse-grained molecular simulations, stochastic modeling, whole cell simulations, as well as the standard methods of molecular and cellular biology and genetics. Research will involve both the development and improvement of experimental and computational techniques and the application of these techniques to particular biological processes such as replication, transcription, translation, cell transport, signaling, and motility. As projects are collaborative endeavors between several labs, the Fellows will have the opportunity to be jointly advised by two or more faculty members of the Center. > Interested applicants should apply via https://my.physics.illinois.edu/join/ no later than December 1, 2012. Applications should include: cover letter, curriculum vita, research statement, publications list, and contact information for three references. Applications received after the December 1st deadline may not be considered. A full job description can be found at: http://www.cplc.illinois.edu/opps/postdocs.asp. > > Please post and circulate the attached announcement or if interested, apply accordingly. > > For more information about CPLC, please visit http://cplc.illinois.edu . > > Thank you. > > Taekjip Ha and Klaus Schulten > Co-directors, Center for the Physics of Living Cells > director(a)cplc.illinois.edu > http://cplc.illinois.edu > University of Illinois at Urbana-Champaign > 1110 West Green Street, MC 704 > Urbana, IL 61801-3080, USA >

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[Compbio-allhands] Fwd: bioengineering, biostats/epidemiology, and biochemistry faculty positions at UC Merced
by Andrej Sali 15 Oct '12

15 Oct '12

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: David Ojcius <david.ojcius(a)gmail.com> > Subject: bioengineering, biostats/epidemiology, and biochemistry faculty positions at UC Merced > Date: October 14, 2012 5:45:19 PM PDT > To: sali(a)salilab.org > Reply-To: David Ojcius <dojcius(a)ucmerced.edu> > > Dear Dr. Sali: > > I'm writing to draw your attention to a search for two faculty positions in biostatistics/epidemiology and biochemistry/molecular biology at the assistant professor rank that may be of interest to your post-docs or former graduate students. The positions are in the Molecular Cell Biology group at the newest campus of the University of California (UC) in Merced. Preference will be given to candidates doing research related to cancer, diabetes, neurobiology, inflammation, infectious disease, or mechanisms of cell fate decisions. Applicants must have a Ph.D. and a record of research, publication, and teaching commensurate with a faculty appointment at the University of California. > > The university also seeks applications for an open-rank position in bioengineering. A preference will be given to candidates working on physiological modeling, but strong candidates in other areas will also be considered. > > Interested individuals can refer to the full postings at: > http://jobs.ucmerced.edu/n/academic/position.jsf?positionId=4259 > http://jobs.ucmerced.edu/n/academic/position.jsf?positionId=4252 > http://jobs.ucmerced.edu/n/academic/position.jsf?positionId=4264 > > For additional information on UC Merced or the current biomedical sciences research programs, they can refer to the following website: > http://hsri.ucmerced.edu/ > > UC Merced is an affirmative action/equal opportunity employer with a strong commitment to the achievement of diversity among its faculty, staff, and students, and we strongly encourage applications from women and underrepresented groups. > > Sincerely yours, > > David Ojcius

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[Compbio-allhands] Fwd: Expertise in computational modelling systems
by Tom Ferrin 15 Oct '12

15 Oct '12

-------- Original Message -------- Subject: Expertise in computational modelling systems Date: Mon, 15 Oct 2012 10:09:31 +0100 From: Veronique Scordia <VS(a)oakland.co.uk> To: <tef(a)cgl.ucsf.edu> Good morning, My name is Véronique Scordia and I am working for a company called Oakland Innovation, a technology research company, based in Cambridge, UK. I am working with a client, a multinational food company, that is looking to *fund a PhD or a Post-Doc position to build a computational modelling system to predict UV-Visible spectral properties of certain molecules. * Indeed, our client asked us to find academic groups with capabilities to build a computational modelling system to predict UV-Visible spectral properties of certain molecules. These molecules have certain degree of conjugation and number of aromatic groups. Additionally they would like to model the effect of solvent, changes in pH and presence of multiple molecule interaction have on the UV-Visible spectral properties of these molecules. I will call you in the next few days, please let me know if there is a particular time/day that would suit you best. I am looking forward to our conversation. Kindest regards, Véronique ** ** *Véronique Scordia PhD Senior Analyst* * Oakland Innovation Ltd 328/329 Cambridge Science Park* *Milton Road* *Cambridge CB4 0WG* *UK* *T: +44 (0) 1223 507500 F: +44 (0) 1223 507501 E: vs(a)oakland.co.uk <mailto:vs@oakland.co.uk>* *www.oakland.co.uk <file:///\\www.oakland.co.uk> * *------------------------------------------------------- * *OAKLAND: INTELLIGENT THINKING ON BUSINESS INTELLIGENCE * * *CONFIDENTIAL: The information in this document is confidential and may be legally privileged. It is intended solely for the addressee. Access to this document by anyone else is unauthorised. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted to be taken in reliance on it, is prohibited and may be unlawful. It is possible for e-mails to be intercepted or affected by viruses. Whilst we maintain virus checks on inbound e-mails, we accept no liability for viruses or other material introduced with this message. This email message has been scanned for viruses by MessageLabs.

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[Compbio-allhands] 10/18/12 Seminar with Dianne Newman
by Nicole Takesono Flowers 12 Oct '12

12 Oct '12

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Dianne Newman CalTech New interpretations of ancient biomarkers: exploring the functions of (2-methyl) hopanoids, steroid analogs in bacteria October 18, 2012 J. Kliegman, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Advice much appreciated - Faculty position UW High resolution electron microscopy
by Andrej Sali 11 Oct '12

11 Oct '12

Sent from my iPhone Begin forwarded message: > From: "Wim G. J. Hol" <wghol(a)uw.edu> > Date: October 11, 2012, 11:26:08 AM PDT > To: sali(a)salilab.org > Subject: Advice much appreciated - Faculty position UW High resolution electron microscopy >

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