- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Fwd: Mobley lab hiring postdoc
by Jacobson, Matt 05 Apr '19

05 Apr '19

— Matt Begin forwarded message: From: David Mobley <dmobley(a)uci.edu<mailto:dmobley@uci.edu>> Subject: Mobley lab hiring postdoc Date: April 5, 2019 at 9:46:35 AM PDT To: David Mobley <dmobley(a)mobleylab.org<mailto:dmobley@mobleylab.org>> Dear Colleagues, I'm looking for a postdoc to start late summer or early fall in the area of free energy calculations and applications to problems in pharmaceutical drug discovery, ideally someone with significant software development experience and expertise with MD and/or Monte Carlo. Please pass along this link to anyone suitable you might be aware of: https://mobleylab.org/2019/04/05/postdoc-position-available-on-free-energy-…<https://protect2.fireeye.com/url?k=52e192f2-0ea1ffa4-52e1b5ef-0cc47adb57f0-…> Thanks so much, David Mobley -- David Mobley Professor Department of Pharmaceutical Sciences Department of Chemistry 3134B Natural Sciences I University of California, Irvine Irvine, CA 92697 dmobley(a)uci.edu<mailto:dmobley@uci.edu> work (949) 824-6383 cell (949) 385-2436

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[Compbio-allhands] 4/25/19 Seminar with Christine Jacobs-Wagner
by Flowers, Nicole 04 Apr '19

04 Apr '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/TATvuI [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Christine Jacobs-Wagner Yale Governing and organizational principles of transcription and translation: Lessons from bacteria April 25, 2019 F. Chang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] COMP together event on 11th April @ 6pm (GH N-114)
by isha singh 01 Apr '19

01 Apr '19

Hi all, Please join us at the COMP-together event on 11th April (6 pm) jointly organized by ACS Bay Area "Comp Together" and UCSF Pharm Postdocs. *Talks begin @6 pm*: *Sereina Riniker (ETH Zürich)*: Machine Learning with and for Molecular Dynamics Simulations *Hanneke Jansen (Novartis, Emeryville)*: Effective Exploration of Chemical Space in Hit-Finding Location 1700 4th St. UCSF Mission Bay *GH-N114 (Genentech Hall)* San Francisco CA 94158 Sponsored by Gilead and the COMP Division of the ACS Thank you. Best, Isha Isha Singh, PhD Post Doctoral Research Fellow @ Shoichet Lab Department of Pharmaceutical Chemistry - UCSF 1700 4th Street, room N501 San Francisco, CA 94158 USA Tel +1-415-514-4253

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[Compbio-allhands] Yurii Moroz of Enamine visiting Friday April 12th
by John Irwin 28 Mar '19

28 Mar '19

Dear Compbio Allhands If you are or are planning to become Enamine customers, Yurii Moroz, head of the Enamine REAL make-on-demand 710 M and growing project will be visiting us in two weeks, Friday April 12. He will be visiting with one or two colleagues. If you would like to meet Yurii, please write me with a time that works for you and I will try to arrange. Yurii will hold "Office Hours" in BH501 from 11-12 and 3-4 pm where you may simply drop by to chat. If you plan to do this, please let me know in a one-line email so we can plan. John John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] Fwd: postdoc positions
by Andrej Sali 28 Mar '19

28 Mar '19

> Begin forwarded message: > > From: Pedro Beltrao <pbeltrao(a)ebi.ac.uk> > Subject: postdoc positions > Date: March 28, 2019 at 4:13:26 AM PDT > To: undisclosed-recipients:; > > Dear colleagues, > > I am currently recruiting for 2 funded bioinformatics postdoc positions and I would be grateful if you could forward this to members of your team that may be a fit to such a position. > > We are hiring for any topic that relates to the interest of the group. This includes large scale studies of phosphorylation/ubiquitination and mutation data and/or genotype to phenotype analysis, including cancer genomics. Bioinformatics experience is required but I would also welcome applications for combined wet/dry positions. > > https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01381&newlang=1&pos[]=… <https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01381&newlang=1&pos[]=…> > > Although the closing date is on the 18 of April, I am happy to wait for strong applicants to join later in the year or even at the start of next year. > > thank you in advance > Pedro

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[Compbio-allhands] 4/4/19 Seminar with Zan Luthey-Schulten
by Flowers, Nicole 26 Mar '19

26 Mar '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/TATvuI Zan Luthey-Schulten University of Illinois at Urbana-Champaign Towards Simulating a Minimal Bacterial Cell: Integration of Experiment and Theory April 4, 2019 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Schrodinger software workshop @ UCSF - April 11
by John Irwin 13 Mar '19

13 Mar '19

Please register to reserve your spot! (free) https://www.eventbrite.com/e/schrodinger-workshop-at-uc-san-francisco-regis… Morning Session: Life-Sciences Molecular Dynamics Time: 9:30am - 12:00pm Description: This workshop is designed to enable users to run protein molecular dynamics simulations effectively using best practices. We cover basic workflows which include how to build systems appropriate for MD, running MD, basic and advanced trajectory analysis tools, and the architecture and configuration of Desmond input and output files. Finally, we will consider the use of binding-pose metadynamics as an approach for improved pose prediction within the context of a protein-ligand complex. Familiarity with Maestro is recommended. More details on MD can be found at: https://www.schrodinger.com/desmond Afternoon Session: Compound Library Preparation and Ligand-based Virtual Screening Time: 1:00pm - 3:30pm Description: This half-day workshop will cover two interrelated toolsets in computer-aided drug design that rely on the use of chemical descriptors to shape and screen compound libraries. The first part of the workshop will cover compound library design and preparation for virtual screening. During the session, we will discuss the selection and enumeration of virtual compound libraries followed by the shaping and preparation of those libraries for virtual screening. Hands-on tutorials with Schrödinger’s enumeration and filtering tools will be provided. The second part of the workshop will be an introduction to pharmacophore-based virtual screening with Schrödinger’s Phase. More details on Phase can be found at: https://www.schrodinger.com/phase John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] 10 am TODAY seminar: Design and synthesis of novel building blocks for drug discovery
by John Irwin 13 Mar '19

13 Mar '19

Seminar by Pavel Mykhailiuk, CSO Enamine, Kyiv "Design and synthesis of novel building blocks for drug discovery." Genentech Hall S-536A Weds March 13, 2019, 10-11 am TODAY Host: John Irwin John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] Seminar: Pavel Mykhailiuk of Enamine - Weds March 13 2019 . 10 am
by John Irwin 11 Mar '19

11 Mar '19

Seminar by Pavel Mykhailiuk, CSO Enamine, Kyiv "Design and synthesis of novel building blocks for drug discovery." Genentech Hall S-536A Weds March 13, 2019, 10-11 am Host: John Irwin

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[Compbio-allhands] 3/14/19 Seminar with Rachel Klevit
by Flowers, Nicole 08 Mar '19

08 Mar '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Rachel Klevit Yale From One to Many: How Ubiquitin Regulates (almost) Everything March 14, 2019 S. Dickinson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Fall ACS Meeting - Call for abstracts - Women make COMP symposium
by Jacobson, Matt 05 Mar '19

05 Mar '19

— Matt Begin forwarded message: From: "Armacost, Kira A." <kira.armacost(a)merck.com<mailto:kira.armacost@merck.com>> Subject: Fall ACS Meeting - Call for abstracts - Women make COMP symposium Date: March 5, 2019 at 11:18:55 AM PST Cc: Giulia Palermo <gpalermo(a)engr.ucr.edu<mailto:gpalermo@engr.ucr.edu>>, Maria Nagan <maria.c.nagan(a)gmail.com<mailto:maria.c.nagan@gmail.com>> Hey all – This is a call for the Women make COMP symposium that will be held at the Fall ACS meeting in San Diego. We are actively searching for abstracts from female graduate students and postdocs to participate in this symposium. Each awardee will be given the opportunity to present a short oral presentation alongside lectures from eminent women in the COMP field from both academia and industry. The awardee will also be given the Promise in COMP award, which includes registration fees and a plaque. Abstracts are due March 25th, under the ACS MAPS portal for COMP – Women make COMP symposium. Please see attached PDF for any other information, and forward to whomever you would like. If you have any questions, please let myself, Giulia or Maria know! Thanks, Kira Armacost Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system.

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[Compbio-allhands] 2/27/19 Peter Kollman Lectureship with Frances Arnold
by Flowers, Nicole 21 Feb '19

21 Feb '19

PETER A. KOLLMAN LECTURESHIP Frances Arnold Cal Tech Wednesday, February 27, 2019 4:00 PM Genentech Hall Byers Auditorium - UCSF Mission Bay Campus Livestream: http://tiny.ucsf.edu/VB1vGc Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Re: Looking for Fellows in the Life Sciences
by Tom Ferrin 20 Feb '19

20 Feb '19

-------- Forwarded Message -------- Subject: Re: Looking for Fellows in the Life Sciences Date: Wed, 20 Feb 2019 13:40:10 +0000 From: Murray, Andrew <awm(a)mcb.harvard.edu> To: awm(a)fas.harvard.edu <awm(a)fas.harvard.edu> CC: Kefalas, Linda <lkefalas(a)mcb.harvard.edu> Reminder that the application deadline for this search is* 11:59pm EST, on Thursday, February 28, 2019*. ** *ANDREW MURRAY* 617-496-1350 MCB, HARVARD UNIVERSITY 52 OXFORD STREET, NW 469.20 awm(a)mcb.harvard.edu CAMBRIDGE, MA 02138 *Lab Administrator*: Linda Kefalas (lkefalas(a)mcb.harvard.edu, 617-496-1350) *Lab*: 617-496-1384 or 617-496-1489 *Lab website*: https://www.mcb.harvard.edu/directory/andrew-murray/ *John Harvard Distinguished Science Fellows website*: https://projects.iq.harvard.edu/jhdsfprogram <https://projects.iq.harvard.edu/jhdsfprogram.> ------------------------------------------------------------------------ *From:* Murray, Andrew *Sent:* Monday, December 3, 2018 8:03 AM *To:* awm(a)fas.harvard.edu *Cc:* Kefalas, Linda *Subject:* Looking for Fellows in the Life Sciences Dear Friends, Humblest apologies for the mass emailing, and please let us know if you'd prefer not to receive these emails in the future. We are looking for John Harvard Distinguished Science Fellows in the life sciences, who will be appointed for an initial three years and will form a small community of exciting young scientists both by interacting with each other and with their counterparts in the life sciences. If you're a physical scientist, you're getting this email because you might have run into someone in the life sciences who seems appropriate for this fellowship or know colleagues in the life sciences who you could pass this request on to. Briefly, i) we are looking for extremely bright and creative young scientists from across the full breadth of the life sciences, including those with training in theory and computation, ii) we will give the successful applicant the space, facilities,and money to run a three-person research group for five years, iii) each Fellow will have a formal affiliation with and participate in the intellectual life of one of the life science departments, iv) the Fellow will teaching responsibilities byparticipating in the research laboratories of a new Integrated Science course (https://projects.iq.harvard.edu/ls50) v) the Fellow will be intensely mentored by participating in a weekly communal lab meeting, meeting me monthly, having their paper drafts and grant applications read and critiqued, and meeting with a three person mentoring committee twice a year, and vi) the new Fellows will be located in the Northwest Building next to the John Harvard Distinguished Science Fellows (https://projects.iq.harvard.edu/jhdsfprogram) If you know anyone fabulous, please tell them to apply, and, if you've time, please let us know that you have. Details on how to apply are at:*http://academicpositions.harvard.edu/postings/8627* The application deadline is* 11:59pm EST, on Thursday, February 28, 2019*. Many, many thanks, Andrew *Information about the Fellows Program* The John Harvard Distinguished Science Fellow’s program is an initiative in Faculty of Arts and Sciences to recruit bright young scientists to work as independent researchers at Harvard. There are separate searches for Fellows in the physical and life sciences, but the Fellows appointed by these searches form a single intellectual community. The life science Fellows are young, independent researchers usually straight out of their PhD who are appointed initially for three years, and carries an expectation of extension by a further two years. Each fellow has the support of a mentoring committee comprising of three faculty who are interested in the fellow's area of research. As fellows move on to faculty positions, we replace them with new fellows; this year we are looking to hire one new fellow. Because we strongly believe that solving exciting problems will require combining different approaches, we are particularly interested in recruiting fellows with broad scientific interests and a taste for collaboration. We strongly encourage applications from women and minority candidates. A description of the Fellow program, and information about the application procedure, is available on our website at: */https://projects.iq.harvard.edu/jhdsfprogram/* ** *ANDREW MURRAY* 617-496-1350 MCB, HARVARD UNIVERSITY 52 OXFORD STREET, NW 469.20 awm(a)mcb.harvard.edu CAMBRIDGE, MA 02138 *Lab Administrator*: Linda Kefalas (lkefalas(a)mcb.harvard.edu, 617-496-1350) *Lab*: 617-496-1384 or 617-496-1489 *Lab website*: https://www.mcb.harvard.edu/directory/andrew-murray/ *John Harvard Distinguished Science Fellows website*: https://projects.iq.harvard.edu/jhdsfprogram <https://projects.iq.harvard.edu/jhdsfprogram.>

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[Compbio-allhands] COMP together talks today @ 6pm (GH N-114)
by isha singh 19 Feb '19

19 Feb '19

Hi all, Please join us at the COMP-together event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs. Schedule: 6–7 pm: Networking & posters (pizza & drinks provided) 7–7:30 pm: Talk 1. Recent Advances in Chemical Search Systems: Evolution vs. Revolution Speaker: Roger Sayle (NextMove Software) 7:30–8pm: Talk 2. pQSAR story or invention of a time machine Speaker: Valery Polyakov (Novartis) 8-9 pm: Opportunity for extended discussion and networking Location UCSF 1700 4th St. UCSF Mission Bay GH-N114 San Francisco CA 94158 Thank you. Best, Isha

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[Compbio-allhands] Fwd: Intro from Jacob Berlin from City of Hope
by Brian Shoichet 15 Feb '19

15 Feb '19

FYI Brian Shoichet, Professor, UCSF latest science http://www.bkslab.org ---------- Forwarded message --------- From: jacob Berlin <jacob(a)terraytherapeutics.com> Date: Tue, Feb 12, 2019, 5:38 PM Subject: Intro from Jacob Berlin from City of Hope To: <shoichet(a)cgl.ucsf.edu> Dear Brian, Hope that this note finds you well. By way of background I'm now the CEO of Terray Therapeutics a next generation drug discovery company based on six years of research in my lab at City of Hope. I believe you know Vaidehi quite well. Our platform is based on fluorescent imaging of ultra-dense microarrays such that we can measure billions of target/synthetic molecule interactions in a day. I'm reaching out because we are looking to hire someone to lead our data science team. I've followed your work in the field and thought that you might know of a great candidate from your lab or elsewhere. I've attached a job description. Also, I'll be up in SF Feb 26-28 and would love to get together and tell you more about Terray and hear about your work in person. Let me know if that's of interest and if you're free. Best, Jacob Berlin

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[Compbio-allhands] 2/21/19 Seminar with Robert Singer
by Flowers, Nicole 14 Feb '19

14 Feb '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Robert Singer Albert Einstein College of Medicine and Janelia Farm Following single mRNAs in living cells February 21, 2019 L. Weinberger, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] SAVE THE DATE- PETER KOLLMAN LECTURESHIP- FEBRUARY 27, 2019
by Flowers, Nicole 11 Feb '19

11 Feb '19

SAVE THE DATE Wednesday, February 27, 2019 AT 4:00 PM Frances Arnold CalTech PETER A. KOLLMAN LECTURESHIP GENENTECH HALL BYERS AUDITORIUM - UCSF MISSION BAY CAMPUS LIVE WEBCAST: http://tiny.ucsf.edu/VB1vGc Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 2/14/19 Seminar with Hesper Rego
by Flowers, Nicole 08 Feb '19

08 Feb '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Hesper Rego Yale Bacterial infections - one cell at a time February 14, 2019 S. Chou, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Professor of Chemistry - Chicago at The University of Chicago (ID: 43946987)
by Tom Ferrin 08 Feb '19

08 Feb '19

-------- Forwarded Message -------- Subject: Professor of Chemistry - Chicago at The University of Chicago (ID: 43946987) Date: Fri, 08 Feb 2019 14:02:00 +0000 (UTC) From: Kimble Group <kimble(a)kimblegroup.com> To: tef(a)cgl.ucsf.edu Hi Tom, The University of Chicago has an opening for a Professor of Chemistry - Chicago in their Chicago location. We thought you might be interested in this opportunity. To explore this further you'll find more details and the application instructions on the job details page below. Professor of Chemistry - Chicago <https://smail.kimblegroup.com/wf/click?upn=fu5wYRsUPD2SBxLwyhGw8WjKbzjcQBvc…> at The University of Chicago Have a great day. Houston | New York | Los Angeles | Seattle | Atlanta 2450 Louisiana St. Suite 400-437, Houston, TX 77006 If you would like to unsubscribe and stop receiving these emails click here <https://smail.kimblegroup.com/wf/unsubscribe?upn=vt0wlPBpVMTXxsRCM-2F45kMnN…>.

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[Compbio-allhands] Fwd: Ultra-large library docking + ad Principal Scientist Computational Chemistry - Sosei Heptares
by Brian Shoichet 06 Feb '19

06 Feb '19

FYI ---------- Forwarded message --------- From: Chris De Graaf <Chris.DeGraaf(a)soseiheptares.com> Date: Wed, Feb 6, 2019 at 3:01 PM Subject: Ultra-large library docking + ad Principal Scientist Computational Chemistry - Sosei Heptares To: bshoichet(a)gmail.com <bshoichet(a)gmail.com> Dear Brian, I hope you are doing well, congratulations on amongst others your recent impressive publication on ultra-large library docking! Attached/link to a Principal Scientist in Computational Chemistry position at Sosei Heptares, I would be great full if you could share this with those interested: https://www.soseiheptares.com/global-jobs-portal Many thanks in advance and with kind regards, Chris Chris De Graaf PhD Director, Computational Chemistry d +44 (0)1223 949210 m +44 (0)7731 082157 e Chris.DeGraaf(a)SoseiHeptares.com <http://SoseiHeptares.com> Steinmetz Building Granta Park Cambridge CB21 6DG United Kingdom The information in this e-mail is confidential and may be legally privileged. It is intended for the exclusive attention of the addressee stated above and should not be copied or disclosed to any other. If you have received this transmission in error, please contact the sender immediately, make no use of its contents and delete this message from your system. Contact and registered office address: Heptares Therapeutics Limited, Granta Park, Great Abington, Cambridge, CB21 6DG. Company No: 06267989. -- Brian Shoichet, Professor, UCSF latest science from the lab: *http://www.bkslab.org/ <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 2/7/19 Seminar with Angela Brooks
by Flowers, Nicole 01 Feb '19

01 Feb '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Angela Brooks UC Santa Cruz Characterizing RNA splicing alterations in cancer February 7, 2019 T. Cavazos, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 1/31/19 Seminar with Carolyn Bertozzi
by Flowers, Nicole 24 Jan '19

24 Jan '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Carolyn Bertozzi Stanford Cancer immune therapies targeting glycol-immune checkpoints January 31, 2019 P. Rohweder, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Postdoctoral Research Fellow (Computational Biology & Computational Chemistry) in Singapore
by Andrej Sali 23 Jan '19

23 Jan '19

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] 1/24/19 Seminar with Gregory Alushin
by Flowers, Nicole 17 Jan '19

17 Jan '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Gregory Alushin Rockefeller Cytoskeletal structural plasticity in force generation and mechanosensation January 24, 2019 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] SAVE THE DATE- PETER KOLLMAN LECTURESHIP- NOVEMBER 9, 2017
by Flowers, Nicole 16 Jan '19

16 Jan '19

SAVE THE DATE Wednesday, February 27, 2019 AT 4:00 PM Frances Arnold CalTech PETER A. KOLLMAN LECTURESHIP GENENTECH HALL BYERS AUDITORIUM - UCSF MISSION BAY CAMPUS LIVE WEBCAST: http://tiny.ucsf.edu/VB1vGc Reception to follow in Byers Hall 2rd Floor Lounge -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 1/17/19 Seminar with Olivia Rissland
by Flowers, Nicole 10 Jan '19

10 Jan '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Olivia Rissland University of Colorado at Denver Connections between translation and mRNA decay January 17, 2019 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 1/10/19 Seminar with Long Cai
by Flowers, Nicole 04 Jan '19

04 Jan '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Long Cai CalTech Spatial genomics and dynamics by intron seqFISH January 10, 2019 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] faculty position in comp bio at Univ of Lausanne, Switzerland
by Andrej Sali 19 Dec '18

19 Dec '18

https://professeurs.epfl.ch/page-26457-en-html/faculty-position-in-computat… <https://professeurs.epfl.ch/page-26457-en-html/faculty-position-in-computat…> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Opportunity for graduating student / postdoc
by Andrej Sali 13 Dec '18

13 Dec '18

Begin forwarded message: > > From: Scott Pegg <scott.pegg(a)gladstone.ucsf.edu> > Subject: Re: Opportunity for graduating student / postdoc > Date: December 13, 2018 at 8:28:36 AM PST > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej. > > Here's a short advertisement for the position. Thanks for being willing to post it for me. > > Scott > > An early stage drug discovery startup based on novel methods of building and screening DNA-encoded small molecule libraries is looking for a full-time computational scientist to help analyze data and build predictive systems. This is a rare position that provides opportunities in sequence analysis, computational chemistry, and machine learning. The company is based in South San Francisco and is comprised of a highly collaborative, innovative, and fun group of scientists that are pushing the boundaries of drug discovery technology. If you're interested in this position, please contact scott.pegg(a)haystacksciences.com <mailto:scott.pegg@haystacksciences.com>. >

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[Compbio-allhands] 12/6/18 Seminar with Elizabeth Winzeler- MH 1400
by Flowers, Nicole 29 Nov '18

29 Nov '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Mission Hall 1400 Livestream: http://tiny.ucsf.edu/1nDzjE Elizabeth Winzeler UCSD Using genetics and genomics to find next-generation cures for malaria December 6, 2018 E. Gonzalez, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 11/29/18 Seminar with Sinisa Urban- MH 1400
by Flowers, Nicole 29 Nov '18

29 Nov '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Mission Hall 1400 Livestream: http://tiny.ucsf.edu/1nDzjE Sinisa Urban Johns Hopkins Medical Institute Life in the membrane: the story of rhomboid intramembrane proteases November 29, 2018 A. Manglik, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] job ad - field scientist position at Dassault Systems, for macromolecular modelers
by Andrej Sali 27 Nov '18

27 Nov '18

https://careers.3ds.com/jobs/biovia-%E2%80%93-solution-scientist-pre-sales-… <https://careers.3ds.com/jobs/biovia-%E2%80%93-solution-scientist-pre-sales-…> -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Group leader positions in Computational Biology and Genomics at the Center for Genomic Regulation (CRG) in Barcelona
by Jacobson, Matt 19 Nov '18

19 Nov '18

— Matt Begin forwarded message: From: Roderic Guigo <roderic.guigo(a)crg.cat<mailto:roderic.guigo@crg.cat>> Subject: Group leader positions in Computational Biology and Genomics at the Center for Genomic Regulation (CRG) in Barcelona Date: November 15, 2018 at 12:40:36 PM EST To: Roderic Guigo Serra <roderic.guigo(a)crg.cat<mailto:roderic.guigo@crg.cat>> Dear colleagues I would like to bring to your attention to new group leader positions in Computational Biology and Genomics available at the Center for Genomic Regulation (CRG-CNAG) in Barcelona. https://www.nature.com/naturecareers/job?id=663275 The junior group leader positions are ideal for young researchers starting their career as independent researchers. All positions are supported by a generous and very competitive package. While we are prioritising candidates in the areas of Statistical Genomics, Image Bioinformatics and Phenomics, all outstanding candidates in computational biology will be considered The CRG is located at the Barcelona Biomedical Research Park (PRBB) with six other institutes including a newly created EMBL Outstation. Barcelona ranks among the top European cities to do science. It is also a great place to live. The capital of Catalonia, it is a cosmopolitan city, rich in history, culture, art, sports, food, .... It has lively streets. It is socially and politically strongly motivated. A rich and complex environment, which is intellectually very stimulating. Catalonia has great outdoors, and within one day trips you can find yourself in a secluded beach or hiking a solitary peak. Skiing is within two hours drive. Please help us to get this message to candidates that you may know, and to distribute it as widely as possible. Best regards Roderic Guigo, Bioinformatics and Genomics Center for Genomic Regulation and University Pompeu Fabra -- (1) Centre de Regulacio Genomica (2) Universitat Pompeu Fabra Dr. Aiguader, 88 +34 93 3160110 ph E-08003 Barcelona, Catalonia email: roderic.guigo(a)crg.cat https://protect2.fireeye.com/url?k=738b0b89e561db00.738b2c94-56865fec1dbc5f…

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[Compbio-allhands] Fwd: BioMarin Job Opening
by Michael Keiser 13 Nov '18

13 Nov '18

---------- Forwarded message --------- From: Teague Sterling <teaguesterling(a)gmail.com> Date: Mon, Nov 12, 2018 at 10:44 AM Subject: BioMarin Job Opening To: Michael Keiser <keiser(a)keiserlab.org> Hey Mike, I wanted to share a job here in the north bay that may interest some folks in your lab or people you know. It's heavily on the genetics side but I figure you may have one or two interested contacts in that area. It's for a scientist position in our new statistical genetics group here at BioMarin: http://app.jobvite.com/m?3sg0ekwL There's also a Sr./Associate Director level position in the same group. The genetics team here is a great group of scientists and fantastic co workers working on some really interesting projects. Best, Teague -- Michael J Keiser, PhD Assistant Professor, UCSF Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: REVISED POSTING: Postdoctoral position in FFT-based binding free energy calculations
by Andrej Sali 08 Nov '18

08 Nov '18

Sent from my iPhone Begin forwarded message: > From: David Minh <dminh(a)iit.edu> > Date: November 7, 2018 at 3:29:16 PM PST > Subject: REVISED POSTING: Postdoctoral position in FFT-based binding free energy calculations > > Dear fellow PIs in theoretical/computational chemistry, > > I have revised the following postdoctoral job announcement: > > — > > Recently, my group showed that a fast Fourier transform may be used to quickly calculate binding free energies (J. Comput. Chem 2018 (39): 621-636). Our article describing this approach was selected for the cover of JCC, recommended by F1000 as being of special significance in its field, and forms the basis of a recently-awarded NIH grant. I am looking for a capable and enthusiastic postdoc to develop and apply this innovative approach to protein-protein binding free energies. The postdoc will also have the opportunity to and be expected to help mentor graduate and undergraduate students, write papers on the research conducted, and present at scientific meetings. > > Qualifications for the position include experience with (bio)molecular modeling and programming (preferably python), proficiency with statistical mechanics, and demonstrated ability to write scientific manuscripts (preferably as first author). A Ph.D. in Chemistry, Physics, or a related area is required before starting the position. > > The position will be at the Illinois Institute of Technology in Chicago, starting January 2019 or later. Salary will be commensurate with experience. Presently, funding for this position is expected to last for about four years. > > To apply, please send a cover letter, curriculum vitae, and contact information for 2-3 references to David Minh (dminh(a)iit.edu) > > — > > David Minh, PhD > Assistant Professor, Department of Chemistry > Associate Director, Center for Interdisciplinary Scientific Computation > Illinois Institute of Technology > email: david.minh(a)iit.edu > Skype: daveminh > > Links: > Research group > David’s availability calendar >

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[Compbio-allhands] 11/15/18 Seminar with HARC Speaker, Jesse Bloom
by Flowers, Nicole 05 Nov '18

05 Nov '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1nDzjE [cidimage001.png(a)01D348E0.5A74E200] Jesse Bloom Fred Hutchinson Cancer Research Center How genetic heterogeneity affects the outcome of viral infection in single cells November 15, 2018 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: Research position in computational chemistry at Pfizer, Cambridge MA
by Jacobson, Matt 02 Nov '18

02 Nov '18

— Matt Begin forwarded message: From: "Lovering, Frank" <Frank.Lovering(a)pfizer.com<mailto:Frank.Lovering@pfizer.com>> Subject: Research position in computational chemistry at Pfizer, Cambridge MA Date: November 2, 2018 at 8:37:52 AM PDT To: "Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Matt, We have an opening in Computational Chemistry at Pfizer, Cambridge, MA, in the Inflammation and Immunology Computational Chemistry group. As described in the link below, we are looking for candidates with expertise in Computational Chemistry who are interested in applying a wide variety of techniques to impact projects in the Inflammation and Immunology portfolio. At Pfizer we have state-of-the-art facilities and access to a wide variety of tools that scientists can utilize. While the job description does suggest that post-PhD work experience would be desired, we would also welcome highly qualified candidates without such work experience to apply, especially people with postdoctoral research experience. If you know of any outstanding candidates who might be interested in this opportunity, please ask them to see the link as well as to reach out to me directly for more information. Sincerely, Frank Lovering, Ph.D. Director, Computational Chemistry Inflammation and Immunology Chemistry Pfizer Cambridge, MA Frank.lovering(a)pfizer.com<mailto:Frank.lovering@pfizer.com> 978 509 2141 Link to Job posting: https://pfizer.wd1.myworkdayjobs.com/en-US/PfizerCareers/job/United-States-…

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[Compbio-allhands] Fwd: Postdoctoral position in the area of FFT-based binding free energy calculations
by Andrej Sali 02 Nov '18

02 Nov '18

> Begin forwarded message: > > From: David Minh <dminh(a)iit.edu> > Subject: Postdoctoral position in the area of FFT-based binding free energy calculations > Date: November 2, 2018 at 11:22:49 AM PDT > To: David Minh <dminh(a)iit.edu> > > Dear fellow PIs in theoretical/computational chemistry, > > Please forward the following posting to any potentially interested candidates: > > — > > Beginning January 2019 or later, a senior research associate position is available in the Department of Chemistry at the Illinois Institute of Technology (in Chicago) to develop computational biochemistry methods for binding free energy calculations. Specifically, the researcher will work on FFT-based binding free energy calculations (J. Comput. Chem 2018 (39): 621-636) for protein interactions. The position will be for one year but may be extended to multiple years. Salary will be commensurate with experience. Applicants should have a Ph.D. in Chemistry, Physics, or related area, and have a strong background in computational chemistry or physics. Candidates should be capable of working independently or with others and have several publications. In addition to the research projects, other duties of the position include mentoring undergraduate and graduate students, writing papers on research conducted, and presenting research at scientific meetings. > > Please send a cover letter, curriculum vitae, and contact information for 2-3 references to Professor David Minh (dminh(a)iit.edu <mailto:dminh@iit.edu>). > > — > > Best regards, > > David Minh, PhD > Assistant Professor, Department of Chemistry > Associate Director, Center for Interdisciplinary Scientific Computation > Illinois Institute of Technology > email: david.minh(a)iit.edu <mailto:david.minh@iit.edu> > Skype: daveminh > > Links: > Research group <http://mypages.iit.edu/~dminh/> > David’s availability calendar <https://calendar.google.com/calendar/embed?src=daveminh@gmail.com&ctz=Ameri…>

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[Compbio-allhands] 11/8/18 Braisted Lecture with Tom Muir
by Flowers, Nicole 01 Nov '18

01 Nov '18

UCSF-UCB Andrew Braisted Award Lectureship Livestream: http://tiny.ucsf.edu/1nDzjE Tom Muir, Ph.D. Princeton Inteins: Discovery, Engineering and Applications to Chromatin Biology Thursday, November 8, 2018 4 pm Genentech Hall Byers Auditorium UCSF Mission Bay Campus Contact: Charles Craik Sponsor: The Andrew Braisted Lecture Fund -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: AbbVie Postdoctoral Program
by Michael Keiser 22 Oct '18

22 Oct '18

---------- Forwarded message --------- From: Korst, Dorth M <Dorth.Korst(a)abbvie.com> Date: Fri, Oct 19, 2018 at 4:02 PM Subject: AbbVie Postdoctoral Program To: keiser(a)keiserlab.org <keiser(a)keiserlab.org> Dr. Keiser, Dr. Scott Mittelstadt, Director of Pharmaceutical Development/AbbVie Development Sciences indicated that he had met you recently at a conference and that you had mentioned that you had two graduate students finishing up their graduate work. If my timing serves me well, I would like to present an opportunity for an industry Postdoc positon within our Development Biological Sciences group. I have attached a brochure which provides an overview of our program, now in its third year, as well as, a cover note from the hiring manager, Dr. Mohan Rao, and a more detailed position description. If there might be an interest, could you direct your students to me and I would be able to elaborate a bit further on AbbVie and its excitement and commitment to this program. *Cheers /TSChuss* *Dorth Korst* Postdoctoral Program Manager [image: cid:image005.png@01CFC6D1.D5522A30] *AbbVie* V32W AP34 – SW 2nd Floor 1 North Waukegan Road North Chicago, IL 60064 *OFFICE * +1 847-938-3599 *CELL:* +1 224 214-2093 *FAX * +1 847-937-4464 *EMAIL * dorth.korst(a)abbvie.com *AbbVie Fact Book <http://www.flipsnack.com/FDFAE758B7A/explore-abbvie-share-the-passion.html>* *abbvie.com <http://www.abbvie.com/> | Follow us: * *[image: twitter]* <http://www.twitter.com/abbvie> *[image: facebook]* <http://www.facebook.com/abbviecareers> *[image: linkedin]* <http://www.linkedin.com/company/abbvie> *[image: youtube]* <https://www.youtube.com/user/AbbVie> PEOPLE. PASSION. POSSIBILITIES. -- Michael J Keiser, PhD Assistant Professor, UCSF Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] 10/25/18 Seminar with Youxing Jiang
by Flowers, Nicole 18 Oct '18

18 Oct '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1nDzjE Youxing Jiang UT Southwestern Structural Insights into the Selectivity and Gating of Organellar Two-pore Channels October 25, 2018 B. Stroud, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/18/18 Seminar with Yuan Gao
by Flowers, Nicole 12 Oct '18

12 Oct '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1nDzjE Yuan Gao Clements Lecture Structural studies on ligand and lipid modulation of the capsaicin receptor, TRPV1 October 18, 2018 Y. Cheng & D. Julius, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Fwd: 4-year PhD Theoretical Systems Biology & Bioinformatics @ Imperial College London Oct 2018
by Andrej Sali 08 Oct '18

08 Oct '18

> Begin forwarded message: > > From: "Sternberg, Michael J E" <m.sternberg(a)imperial.ac.uk> > Subject: FW: 4-year PhD Theoretical Systems Biology & Bioinformatics @ Imperial College London Oct 2018 > Date: October 8, 2018 at 5:37:53 AM PDT > > > > Dear colleague > > I would be grateful if you could forward this exciting opportunity to your undergraduates > > If possible, please could put the poster - that would be great. > > Thanks > > Mike Sternberg > Imperial College London > > A 4-year PhD in Theoretical Systems Biology and Bioinformatics at Imperial College London > The opportunity > This 4-year PhD programme <https://www.findaphd.com/common/clickCount.aspx?theid=1005&type=185&url=htt…>, supported by The Wellcome Trust, will provide an exciting training opportunity to acquire multidisciplinary skills to develop and then apply modelling to biological and clinical problems at the molecular and cellular levels. The programme aims to facilitate discipline hopping into this area and we welcome undergraduates from biological and medical sciences, physical sciences, mathematics, statistics, engineering and computing. The course will enable you, whatever your first degree, to acquire the breadth of skills to undertake stimulating research using theoretical systems biology and bioinformatics to advance biological and clinical research. As a member of the programme you will join a large community at Imperial applying modelling to study biological and biomedical problems. > > > > The training programme > You will begin your studies by being registered on our highly-successful, year-long MSc in Bioinformatics and Theoretical Systems Biology. This course starts with training and you will acquire core biological, computational and mathematics skills and have lectures in bioinformatics and theoretical systems biology. This is followed by three different rotation projects which enable you to discover and experience different modelling methodologies and experimental laboratory environments. During the first year you will benefit from working with many other students studying for this MSc. The subsequent three PhD years will involve research developing novel theoretical methodologies and applying them to solve biological and biomedical problems. You will have two supervisors throughout your PhD – one theoretical and one experimental – to provide multidisciplinary training. You will have an opportunity to spend time with the experimental group so you understand the data-generating protocols and you can undertake laboratory work to test hypotheses generated from your modelling. We will offer you a wide range of research topics for your PhD as Imperial College has many vibrant research groups working in theoretical systems biology and bioinformatics and their application to bioscience and biomedical problems. > > Application Procedure > The next 4-year programme starts in October 2018. There are 5 fully funded places (stipend, fees and generous research support including travel) for home/EU students and there is one scholarship to provide the additional fees required for an exceptional overseas student. The stipend for 2017 will start at no less than £22,278 in year one, rising to at least £26,839 in year four. Deadline for receipt of applications is 23:00 GMT on Monday 4 December 2017. For further details and application procedure: Google “Wellcome Bioinformatics Imperial” > or go to http://www.imperial.ac.uk/wellcome-bioinformatics-phd/ <http://www.imperial.ac.uk/wellcome-bioinformatics-phd/>

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[Compbio-allhands] Fwd: Postdoc Positions Available
by Andrej Sali 04 Oct '18

04 Oct '18

Begin forwarded message: > > From: "Gregory A. Voth" <gavoth(a)uchicago.edu> > Subject: Postdoc Positions Available > Date: October 4, 2018 at 12:31:49 PM PDT > To: "Gregory A. Voth" <gavoth(a)uchicago.edu> > > > Dear Colleague, > > There is the possibility of one or more postdoc positions in my group, subject to the qualifications and experience of the applicants, as well as the final availability of funding. > > The postdoc position(s) involve the development and application of simulation methods for complex membranes and proteins/peptides interacting with them, as well as multi-protein complexes, at both the all-atom and coarse-grained levels. Experience with MD simulation is required, and preferably (but not required) also with free energy sampling techniques such as umbrella sampling, replica exchange, and metadynamics. > > Please ask any interested student in your group to contact me by email. > > Best wishes, > Greg > > PS-I apologize if you get this email more than once. > > _____________________________________________________________________ > > Gregory A. Voth, Ph.D. > Haig P. Papazian Distinguished Service Professor > Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics > > Department of Chemistry > The University of Chicago > 5735 S. Ellis Avenue > Chicago, Illinois 60637 > Phone: 773-702-9092 <tel:773-702-9092> > Fax: 773-795-9106 <tel:773-795-9106> > Administrative Assistant: 773-702-9096 <tel:773-702-9096> > Email: gavoth(a)uchicago.edu <mailto:gavoth@uchicago.edu> > Group Web Site: vothgroup.uchicago.edu <http://vothgroup.uchicago.edu/> > ____________________________________________________________________

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[Compbio-allhands] 10/11/18 Seminar with Rong Li
by Flowers, Nicole 04 Oct '18

04 Oct '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1nDzjE [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Rong Li Johns Hopkins University Cellular asymmetry in aging and proteostasis October 11, 2018 L. Wu, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] 10/4/18 Seminar with Tracy Johnson
by Flowers, Nicole 04 Oct '18

04 Oct '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/1nDzjE Tracy Johnson UCLA RNA Processing, Chromatin Modification, and the Coordinated Control of Gene Expression October 4, 2018 S. Floor, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] 9/27/18 Seminar with Gala Amarasinghe
by Flowers, Nicole 27 Sep '18

27 Sep '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Mission Hall 1400- THIS DATE ONLY Livestream: http://tiny.ucsf.edu/1nDzjE Gaya Amarasinghe Washington University, Saint Louis Viral immune evasion mechanisms September 27, 2018 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Looking For Fellows
by Tom Ferrin 14 Sep '18

14 Sep '18

-------- Forwarded Message -------- Subject: Looking For Fellows Date: Fri, 14 Sep 2018 13:27:55 +0000 From: Murray, Andrew <awm(a)mcb.harvard.edu> To: Murray, Andrew <awm(a)mcb.harvard.edu> CC: Kefalas, Linda <lkefalas(a)mcb.harvard.edu> Dear Friends, Humblest apologies for the mass emailing and please let us know if you'd prefer not to receive these emails in the future. We are looking for John Harvard Distinguished Science Fellows in the physical sciences, who will be appointed for three years and will form a small community of exciting young scientists both by interacting with each other and with their counterparts in the life sciences. If you're a life scientist, you're getting this email because you might have run into someone in the physical sciences who seems appropriate for this fellowship or know colleagues in the physical science who you could pass this request on to. Briefly, i) we are looking for bright and creative young scientists from across the full breadth of the physical sciences, including both theory and experiment, ii) we will give the successful applicant space for their research, principal investigator rights, and can provide some start up funding for experimentalists iii) each Fellow will have a formal affiliation with and participate in the intellectual life of one of the physical science departments, iv) the Fellows will be encouraged, but not obligated, to teach in small classes in areas that they find exciting, and v) the Fellow will be intensely mentored by participating in a weekly communal lab meeting, meeting monthly with the director of the fellows program, having their paper drafts and grant applications read and critiqued, and meeting with a three person mentoring committee twice a year. Our goal is to give the Fellows the time, space, and mentorship to do original and exciting science with a level of independence that is closer to that of a faculty member than that of a postdoc. More details follow at the end of this message. If you know anyone fabulous, please tell them to apply, and, if you've time, please let us know that you have. Details on how to apply are at:*/https://academicpositions.harvard.edu/postings/8368/* The application deadline is*11:59pm EST, November 30, 2018*. Many, many thanks, Andrew *Information about the Fellows Program* The John Harvard Distinguished Science Fellow’s program is an initiative in Faculty of Arts and Sciences to recruit bright young scientists to work as independent researchers at Harvard. There are separate searches for Fellows in the physical and life sciences, but the Fellows appointed by these searches form a single intellectual community. The physical science Fellows are young, independent researchers usually straight out of their PhD who are appointed for three years. Each fellow has the support of a mentoring committee comprising of three faculty who are interested in the fellow's area of research. As fellows move on to faculty positions, we replace them with new fellows; this year we are looking to hire one or two new fellows. Because we strongly believe that solving exciting problems will require combining different approaches, we are particularly interested in recruiting fellows with broad scientific interests and a taste for collaboration. We strongly encourage applications from women and minority candidates. A description of the Fellows program, and information about the application procedure, is available on our website at*/https://projects.iq.harvard.edu/jhdsfprogram/* ** *ANDREW MURRAY* 617-496-1350 MCB, HARVARD UNIVERSITY 52 OXFORD STREET, NW 469.20 awm(a)mcb.harvard.edu CAMBRIDGE, MA 02138 *Lab Administrator*: Linda Kefalas (lkefalas(a)mcb.harvard.edu, 617-496-1350) *Lab Manager*: Beverly Neugeboren (bneugeb(a)mcb.harvard.edu, 617-496-1384 or 617-496-1489) *Lab website*: https://www.mcb.harvard.edu/directory/andrew-murray/ *John Harvard Distinguished Science Fellows website*: https://projects.iq.harvard.edu/jhdsfprogram

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[Compbio-allhands] Fwd: Rockefeller University Faculty Search
by Andrej Sali 14 Sep '18

14 Sep '18

> Begin forwarded message: > > From: Paul Bieniasz <pbieniasz(a)mail.rockefeller.edu> > Subject: Rockefeller University Faculty Search > Date: September 14, 2018 at 12:32:21 PM PDT > To: Paul Bieniasz <pbieniasz(a)mail.rockefeller.edu> > Cc: "Jill C. Benz" <benzj(a)mail.rockefeller.edu> > > Dear Colleague, > > The Rockefeller University is continuing its effort to recruit outstanding new Heads of Laboratory. As chair of the Search Committee, I would greatly appreciate your assistance. We are seeking tenure-track faculty candidates, ranging from new assistant professor candidates to recently tenured scientists at an early stage of their career. > > I would be extremely grateful for your help in one (or more) of three ways: > Please encourage exceptional candidates in your, or other, laboratories to apply. > Please post the attached flyers in your laboratory or department. > We would particularly appreciate receiving your suggestions of specific candidates we should consider. We are especially interested in the names of any women or minority candidates. > The Rockefeller University is committed to supporting outstanding scientists by providing generous resources for research as well as a superb and collaborative environment. We are recruiting in any of the following major areas of research: > > - Biochemistry, Biophysics, Chemical Biology, and Structural > - Cancer Biology > - Cell Biology > - Genetics and Genomics > - Neurosciences and Behavior > - Immunology, Virology, and Microbiology > - Organismal Biology and Evolution > - Mechanisms of Human Disease > - Physical, Mathematical, and Computational Biology > - Stem Cells, Development, Regeneration, and Aging > > Applications are being accepted electronically through our Online Application System at http://oas.rockefeller.edu <http://oas.rockefeller.edu/> > > Please forward any recommendations you may have to facultysearch(a)rockefeller.edu <mailto:facultysearch@rockefeller.edu> > > Further information regarding our current search can be found at http://www.rockefeller.edu/facultysearch <http://www.rockefeller.edu/facultysearch> > > With many thanks in advance for your consideration. > > > Best wishes, > > Paul Bieniasz > Chair, Rockefeller University Faculty Open Search Committee. > > >

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[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium | September 6, 2018 at UCSF Mission Bay
by Tom Ferrin 29 Aug '18

29 Aug '18

*The COMPTogether champions in collaboration with PH-OCS talks would like to announce the following event:* Speaker: Bill Shirley (Novartis), Mika Lindvall (Novartis), John Irwin (UCSF) Title: Talks & Posters by COMP Together & UCSF Pharm Postdocs Date: 2018-09-06 Time: 6:00 PM Event ID: 40 Sponsor: Genentech Location UCSF 1700 4th St. UCSF Mission Bay GH-N114 San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) *Schedule:** 6-7 pm: Networking and posters (pizza and drinks provided) 7 – 7:30 pm: Talk #1 Title: Accelerated chemical inspiration from NibrHops push messages Speakers: Bill Shirley and Mika Lindvall (Novartis) 7:30 – 8.00 pm: Talk #2 Title: Ligand discovery by docking large and growing libraries Speaker: John Irwin (UCSF)* 8-9 pm: Opportunity for extended discussion and networking *We encourage attendees to propose a poster for presentation.* Posters can be put up at 6 pm and stay up through the extended discussion period after the talks. Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together": johanna.jansen(a)novartis.com <mailto:johanna.jansen@novartis.com>, wei.binqing(a)gene.com <mailto:wei.binqing@gene.com>, Uli.Schmitz(a)gilead.com <mailto:Uli.Schmitz@gilead.com>, an.levit(a)gmail.com <mailto:an.levit@gmail.com> Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=40 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=40>. If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com <mailto:atjohanna.jansen@novartis.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>* *

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