- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Fwd: Open position in our Lab, please distribute
by Andrej Sali 19 Apr '21

19 Apr '21

Begin forwarded message: > > From: Marc Marti-Renom <martirenom(a)cnag.crg.eu> > Subject: Open position in our Lab, please distribute > Date: April 19, 2021 at 8:19:03 AM PDT > To: "Marc A. Marti-Renom" <martirenom(a)cnag.crg.eu> > > Dear friends and colleagues, > > Apologies for the mass email. I would love if you can distribute this advertisement along your colleagues. > > We are looking for a Postdoctoral fellow who would like to join our lab in Barcelona to work on spatial transcriptomics and cancer as part of a larger interdisciplinary team. > > You can read more details here: https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct… <https://recruitment.crg.eu/content/jobs/position/postdoctoral-fellow-struct…> > > Thanks and stay safe! > Marc > ... > Marc A. Marti-Renom, ICREA Research Professor > Structural Genomics Group Leader > Centre Nacional d’Anàlisi Genòmica - Centre de Regulació Genòmica (CNAG-CRG) > The Barcelona Institute of Science and Technology (BIST) > Parc Científic de Barcelona – Torre I (10th floor) > Baldiri Reixac, 4, 08028 Barcelona > Tel +34 9340 33743 > Email: martirenom(a)cnag.crg.eu <mailto:martirenom@cnag.crg.eu> · martirenom(a)gmail.com <mailto:martirenom@gmail.com> > Web: http://marciuslab.org <http://marciuslab.org/> · http://cnag.crg.eu <http://cnag.crg.eu/> · http://crg.cat <http://crg.cat/> > > *** Consider the environment. Print responsibly. *** > > > > > >

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host This lecture will NOT be recorded as unpublished data will be shared. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/22/21 BBC Seminar with Vamsi Mootha, MD
by Flowers, Nicole 16 Apr '21

16 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Vamsi Mootha, MD Harvard Mitochondrial parts, pathways, and pathogenesis April 22, 2021 Y. Gómez, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/15/21 BBC Seminar with Lisa Jones, PhD
by Flowers, Nicole 09 Apr '21

09 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Lisa Jones, Ph.D. University of Maryland In-Cell Protein Footprinting Coupled with Mass Spectrometry for Proteome-Wide Structural Biology April 15, 2021 S. Naing & S. Thompson, Hosts BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/8/21 BBC Seminar with Kevin Haigis, PhD
by Flowers, Nicole 02 Apr '21

02 Apr '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Kevin Haigis, Ph.D. Harvard How mutations and post-translational modifications influence K-RAS networks April 8, 2021 S. Bandyopadhyay, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] 4/1/21 BBC Seminar with Eugene Valkov, PhD
by Flowers, Nicole 29 Mar '21

29 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Eugene Valkov, Ph.D. NIH Biochemical Studies of Messenger RNA Degradation April 1, 2021 J. Gross, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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[Compbio-allhands] Fwd: Post-doc opportunity: Machine learning for biology (Biancalani lab)
by Michael Keiser 15 Mar '21

15 Mar '21

---------- Forwarded message --------- From: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Date: Sat, Mar 13, 2021 at 2:08 PM Subject: Post-doc opportunity: Machine learning for biology (Biancalani lab) To: Tommaso Biancalani <biancalani.tommaso(a)gene.com> Hi, I am looking for a postdoc for my lab in Genentech (in the beautiful San Francisco, CA), and I would appreciate it if you could circulate the opening to potentially interested candidates. The position is for four years and includes competitive salary (>$80k gross) and benefits - you can find more details here <https://www.gene.com/careers/university-and-early-career/postdocs>. Broadly speaking, in my lab we leverage AI methods to understand -omic data, with focus on scRNA-seq, *ISH, and spatial transcriptomics. Some topics of interest include identifying cell cell communication mechanisms, revealing spatial co-localization of cell types or gene programs, and predicting the outcome of perturbation assays. We address these topics using modern machine learning methods, such as training a convolutional neural network for extracting features from images, learning a latent representation for harmonizing different data modalities, using gradient boosting to forecast biological responses from medical records and so forth. My lab is within Research Biology in Genentech which is *very* academic-like. Our environment is ideal either for landing an academic professorship or an industry job. I would be delighted to provide more information about how life is in Genentech. The interested candidates can apply here <https://www.gene.com/careers/detail/202102-103783/Postdoctoral-Fellow-Artif…>. Feel free to drop me a message so that I am aware of your application. Ciao, -- *Tommaso Biancalani PhD* *Director and Senior Scientist* AI/ML (Research Biology) Genentech <https://www.gene.com/> | +1-650-608-0381 -- Michael J Keiser, PhD Associate Professor, UCSF Chan Zuckerberg Initiative Ben Barres Investigator Paul G. Allen Frontiers Group Distinguished Investigator Dept Pharmaceutical Chemistry Dept Bioengineering & Therapeutic Sciences Bakar Computational Health Sciences Institute Kavli Institute for Fundamental Neuroscience Institute for Neurodegenerative Diseases p/1-415-886-7651 keiserlab.org <http://www.keiserlab.org> calendly.com/mjke

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[Compbio-allhands] Fwd: Postdoc position available at Institut Pasteur
by Andrej Sali 15 Mar '21

15 Mar '21

Sent from my iPhone Begin forwarded message: > From: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Date: March 15, 2021 at 1:03:08 AM PDT > To: Massimiliano BONOMI <massimiliano.bonomi(a)pasteur.fr> > Subject: Postdoc position available at Institut Pasteur > > Dear friends and colleagues, > > I hope you are all well in these strange times. > > I am writing to you because there is a postdoc position available in my group at Institut Pasteur (Paris, France) starting September 2021. > The position is funded by the French Research Agency (ANR) to work on integrating cryo-EM data in MD simulations for > single-structure and ensemble refinement. If you have talented PhD students (or postdocs) looking for a postdoc, please let them know of this opportunity. > They can contact me directly with any question. More info about this position can be found here: > > https://research.pasteur.fr/en/job/154853/ > > Have a nice day and stay safe, > Max > > --------------------------------------------------------------------------------- > Max Bonomi, Ph.D. HDR > Chargé de Recherche, CNRS UMR 3528 > Group Leader, Institut Pasteur > Department of Structural Biology and Chemistry > 28 rue du Docteur Roux > 75015 Paris, France > phone: +33 (0)1 44 38 93 63 > web: https://research.pasteur.fr/en/member/massimiliano-bonomi/ > email: mbonomi(a)pasteur.fr > twitter: https://twitter.com/BonomiMax >

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[Compbio-allhands] 3/18/21 BBC Seminar with Hunter Fraser, PhD
by Flowers, Nicole 12 Mar '21

12 Mar '21

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Zoom: https://urldefense.com/v3/__https://ucsf.zoom.us/j/98066125224?pwd=TlhUbHpw… Hunter Fraser, Ph.D. Stanford Using hybrids to explore the evolution of complex traits March 18, 2021 N. Ahituv, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view previously recorded lectures from this academic year, please go to this link: https://urldefense.com/v3/__https://ucsf.box.com/v/2020BBCSeminars__;!!LQC6…

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