- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium | September 6, 2018 at UCSF Mission Bay
by Anat Levit 28 Aug '18

28 Aug '18

*The COMP Together champions in collaboration with PH-OCS talks would like to announce the following event:* Speaker: Bill Shirley (Novartis), Mika Lindvall (Novartis), John Irwin (UCSF) Title: Talks & Posters by COMP Together & UCSF Pharm Postdocs Date: 2018-09-06 Time: 6:00 PM Event ID: 40 Sponsor: Genentech Location UCSF 1700 4th St. UCSF Mission Bay GH-N114 San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) *Schedule:* * 6-7 pm: Networking and posters (pizza and drinks provided) 7 – 7:30 pm: Talk #1 Title: Accelerated chemical inspiration from NibrHops push messages Speakers: Bill Shirley and Mika Lindvall (Novartis) 7:30 – 8.00 pm: Talk #2 Title: Ligand discovery by docking large and growing libraries Speaker: John Irwin (UCSF)* 8-9 pm: Opportunity for extended discussion and networking *We encourage attendees to propose a poster for presentation.* Posters can be put up at 6 pm and stay up through the extended discussion period after the talks. Please send proposals (title with optional short description) by email to any of the following, with subject line "Poster Submission for COMP Together": johanna.jansen(a)novartis.com, wei.binqing(a)gene.com, Uli.Schmitz(a)gilead.com, an.levit(a)gmail.com Non-UCSF affiliated participants: please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit http://campuslifeservices.ucsf.edu/transportation/services/parking/public_ parking If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=40. If you have any questions about this event, please contact Hanneke Jansen atjohanna.jansen(a)novartis.com. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/ update_login.php

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[Compbio-allhands] Fwd: Hiring a postdoc in the Shirts Research Group at CU Boulder
by Jacobson, Matt 28 Aug '18

28 Aug '18

— Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Hiring a postdoc in the Shirts Research Group at CU Boulder Date: August 23, 2018 at 3:06:01 PM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Hello, colleagues- I am still in the process of hiring a postdoctoral researcher to do fundamental theoretical and computational work towards understanding and designing secondary structure in general non-peptidic oligomers. I think this is an exciting project (it's probably the new direction I'm most interested in in my group!) with lots of potential directions that someone could take in independent research projects afterwards. I am open to people who might be graduating/finishing later this the fall; there may be some additional candidates who were not ready this summer when I first announced the search who might be interested now. I would love if you could pass this on to any students/former students/junior researchers you think might be good candidates. The job description and direct link to apply is below. I'm happy to answer any questions that anyone you may refer might have. Note: the CU application requires a letter of recommendation, but that does not need to be uploaded initially; that can be uploaded as a confidential letter of recommendation later in the process by me. The job number is #13828 at https://cu.taleo.net/careersection/2/moresearch.ftl. Direct Link is: https://cu.taleo.net/careersection/2/jobdetail.ftl?job=13828&lang=en&sns_id… Job Description: The Shirts research group in the Department of Chemical and Biological Engineering at University of Colorado Boulder is hiring a research associate to help develop guidelines, based on fundamental physical principles, by which short nonbiological heteropolymers with sequence specificity can fold into secondary structure elements. The candidate will also study what governs the relative stability between these allowed secondary structural elements. Initial studies will pave the way for more extensive and realistic modeling of the proposed heteropolymers, working with our experimental collaborators. The research effort is intended to build towards tools for designing human-engineered foldameric materials with a much larger range of properties and functions than occur in naturally occurring biological heteropolymers such as proteins. This position requires a Ph.D. in chemistry, chemical engineering, physics or a related field, and exceptionally strong skills in statistical mechanics and molecular simulation. Other potential (but not required) qualifications of interest include Python expertise and experience with protein design algorithms. Competitive candidates will have a track record of scientific success in graduate study, creative and innovative thinking, experience working on teams, excellent writing skills, and a strong publication record. Best, ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] Fwd: Group Leaders in Cell Biology and Biophysics
by Andrej Sali 23 Aug '18

23 Aug '18

> Begin forwarded message: > > From: "Jan Ellenberg" <jan.ellenberg(a)embl.de> > Subject: Group Leaders in Cell Biology and Biophysics > Date: August 23, 2018 at 12:11:32 PM PDT > To: sali(a)salilab.org > > Dear Andrej, > > I would like to draw your attention to the opening for a group leader position in the Cell Biology and Biophysics Unit at EMBL Heidelberg, as recently advertised in Nature and Science. > > We are looking for outstanding junior scientists with a background in biology, physics, chemistry, engineering or mathematics that want to pursue original and interdisciplinary research in cutting edge molecular cell biology and/or technology development in the areas of imaging technology and computational modelling of dynamic cell biological processes. > > Although there is no age range, we generally hire group leaders early in their careers, often after their first postdoc and sometimes immediately after their PhD. We therefore strongly encourage highly promising young and particularly also female candidates to apply. EMBL group leaders are provided with a very generous internal support package and a highly collaborative environment. > > I would very much appreciate if you could bring the attached advertisement to the attention of suitable candidates or let me know if I should contact them personally. > > Thanks so much for help with this recruitment, > > All the best, > Jan > > Dr. Jan Ellenberg > > Head, Cell Biology and Biophysics Unit > > European Molecular Biology Laboratory (EMBL) > > Meyerhofstr. 1 > > D-69117 Heidelberg > > Germany > > > T +49-6221-387-8391 > > jan.ellenberg(a)embl.de <mailto:jan.ellenberg@embl.de> > > www.embl.de/research/units/cbb/ellenberg/index.html <http://www.embl.de/research/units/cbb/ellenberg/index.html> >

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[Compbio-allhands] Fwd: Opportunity for a postdoctoral position in London
by Andrej Sali 16 Aug '18

16 Aug '18

Sent from my iPad Begin forwarded message: > From: Maya Topf <m.topf(a)cryst.bbk.ac.uk> > Date: August 15, 2018 at 8:49:40 PM PDT > To: Maya Topf <m.topf(a)mail.cryst.bbk.ac.uk> > Subject: Opportunity for a postdoctoral position in London > > Dear friends and colleagues, > > Could you please forward this email to anyone at your research institutions who could be interested in a 2.5 year postdoctoral position in computational biology (with potential extension to 5 years) at Birkbeck College and UCL? > > Detailed information can be found here: > > https://www.jobs.ac.uk/job/BMC050/postdoctoral-researcher-in-computational-… > > Many thanks! > Maya > > > > > -------------- > Maya Topf > Professor in Structural and Computational Biology > Biological Sciences > Institute of Structural and Molecular Biology at Birkbeck/UCL > University of London > Malet St., London WC1E 7HX > Tel: +44 (0)20 7079 0886 > http://people.cryst.bbk.ac.uk/~ubcg67a > > >

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[Compbio-allhands] Fwd: EIPOD postdoctoral fellowships at EMBL
by Andrej Sali 10 Aug '18

10 Aug '18

Begin forwarded message: > > From: Jan Kosinski <jan.kosinski(a)embl.de> > Subject: EIPOD postdoctoral fellowships at EMBL > Date: August 10, 2018 at 12:15:14 AM PDT > To: Andrej Sali <sali(a)salilab.org> > > Hi Andrej, > > I am looking for candidates who would like to apply with my group for the Interdisciplinary Postdoc Fellowship programme (EI3POD) fellowship at EMBL. If you think it could be interesting to someone from your lab or in your network, I would be grateful for forwarding this e-mail. > > The EI3POD fellowships are funded by EMBL and a grant from the EC’s Marie Skłodowska-Curie actions COFUND programme and provide funding for a three-year position. Applicants design and submit interdisciplinary research project involving two or more groups from the six EMBL sites. Additional external partners from academia or industry may also participate as defined by the research interests of the fellows. > > Research areas that currently are relevant for my group are: 1) integrative structure modeling based on EM and other data of protein complexes, viral genomes, and viral particles, 2) analyses of the nuclear pore complex, 3) systems biology and pathway modeling of infection cycles, 4) cell and molecular biology of influenza virus infection in our wet-lab. We would provide training in integrative structure modeling, interpretation of electron microscopy and other data, and, through EIPOD project partners, other techniques at EMBL. > > The details of the EIPOD programme: > https://www.embl.de/training/postdocs/08-eipod/application/index.html <https://www.embl.de/training/postdocs/08-eipod/application/index.html> > > About Kosinski group: > http://www.embl-hamburg.de/research/unit/kosinski/index.html <http://www.embl-hamburg.de/research/unit/kosinski/index.html> > > Best, > Jan > > — > Jan Kosinski > Group leader at European Molecular Biology Laboratory (EMBL) > Joint appointment Structural and Computational Biology Unit EMBL Heidelberg > Group leader at Centre for Structural Systems Biology (CSSB) > > c/o DESY, Building 15 (CSSB), Room 02.247 > Notkestraße 85 > 22607 Hamburg, Germany > Phone: +49 (0)40 8990 2787573 > http://www.embl-hamburg.de/research/unit/kosinski/ <http://www.embl-hamburg.de/research/unit/kosinski/> > http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html <http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html> > > -- > Group leader at European Molecular Biology Laboratory (EMBL) > Joint appointment Structural and Computational Biology Unit EMBL Heidelberg > Group leader at Centre for Structural Systems Biology (CSSB) > > c/o DESY, Building 15 (CSSB), Room 02.247 > Notkestraße 85 > 22607 Hamburg, Germany > Phone: +49 (0)40 8990 2787573 > http://www.embl-hamburg.de/research/unit/kosinski/ <http://www.embl-hamburg.de/research/unit/kosinski/> > http://www.cssb-hamburg.de/research/jan_kosinski/index_eng.html >

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[Compbio-allhands] Fwd: Computational protein engineer position
by Jacobson, Matt 17 Jul '18

17 Jul '18

— Matt Begin forwarded message: From: JW Feng <feng(a)dnli.com<mailto:feng@dnli.com>> Subject: Computational protein engineer position Date: July 16, 2018 at 1:19:56 PM PDT To: "Jacobson, Matt" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Hi Matt, I am looking for a scientist to lead antibody modeling and developability assessment. Would you mind sharing this job description with your network and help me advertise the opening? Thanks, JW ___________________ JW Feng, Ph.D. Denali Therapeutics Inc. 151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080 CONFIDENTIALITY NOTICE: This email message and any attachments are intended solely for the addressee(s) and may contain confidential information or may be legally protected from disclosure. If you are not the intended recipient of this message, or if this message has been addressed to you in error, please immediately alert the sender by reply email and then delete this message and any attachments.

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[Compbio-allhands] Fwd: Career Fair Tomorrow for Bioinformatics Students & Alumni
by Jacobson, Matt 25 Jun '18

25 Jun '18

— Matt Begin forwarded message: From: Charles Howell <chowell(a)CareerMD.com<mailto:chowell@CareerMD.com>> Subject: Career Fair Tomorrow for Bioinformatics Students & Alumni Date: June 25, 2018 at 12:44:09 PM EDT To: <matt.jacobson(a)UCSF.EDU<mailto:matt.jacobson@UCSF.EDU>> Good morning, Students (and alumni) in Bioinformatics, Quantitative Biology, and Computational Biology training programs are invited to participate in the CMDscience Virtual Career Fair<http://www.careermd.com/science>, taking place online tomorrow, Tuesday, June 26. This invitation-only digital event offers your busy trainees an opportunity to learn about Bioinformatics employment opportunities at numerous life science and engineering companies across the country -- all from the convenience of their phones, laptops, or tablets. Participants may log into this Career Fair any time between 6am and midnight tomorrow. Would you please forward this invitation to the students, alumni, and quantitative biologists in your department so that they may sign up for the Career Fair? Anyone who would like to participate is asked to email me at chowell(a)CareerMD.com<mailto:chowell@CareerMD.com> with their name, degree program, and year of graduation to receive login instructions for tomorrow's event. Please contact me if you or your trainees have questions about this online Career Fair. Thank you, Charles Howell CMDscience | CareerMD 41 East 11th Street New York, NY 10003 (800) 355-2626 chowell(a)CareerMD.com<mailto:chowell@CareerMD.com>

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[Compbio-allhands] Fwd: Hiring a postdoc in the Shirts Research Group
by Jacobson, Matt 09 Jun '18

09 Jun '18

— Matt Begin forwarded message: From: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Subject: Hiring a postdoc in the Shirts Research Group Date: June 8, 2018 at 12:34:49 PM PDT To: Michael R Shirts <Michael.Shirts(a)Colorado.EDU<mailto:Michael.Shirts@Colorado.EDU>> Hello, friends and colleagues- My group is now hiring a postdoctoral researcher to do fundamental theoretical and computational work towards understanding and designing secondary structure in general non-peptidic oligomers. This should be an exciting project (it's perhaps the new direction I'm most interested in in my group!) with lots of potential places to take independent research afterwards. I would love if you could pass this on to any students/former students/junior researchers you thought would be good candidates. The job description and direct link to apply is below. I'm happy to answer any questions that anyone you are thinking of referring might have. Note: For strange reasons, the CU application requires a non-confidential letter of recommendation. This can consist of a letter that describes the relationship to the applicant, but then states any additional information will be sent directly to me upon request. The job number is #13828 at https://cu.taleo.net/careersection/2/moresearch.ftl. Direct Link is: https://cu.taleo.net/careersection/2/jobdetail.ftl?job=13828&lang=en&sns_id… Job Description: The Shirts research group in the Department of Chemical and Biological Engineering at University of Colorado Boulder is hiring a research associate to help develop guidelines, based on fundamental physical principles, by which short nonbiological heteropolymers with sequence specificity can fold into secondary structure elements. The candidate will also study what governs the relative stability between these allowed secondary structural elements. Initial studies will pave the way for more extensive and realistic modeling of the proposed heteropolymers, working with our experimental collaborators. Research effort is intended to build towards tools for designing human-engineered foldameric materials with a much larger range of properties and functions than occur in naturally occurring biological heteropolymers such as proteins. This position requires a Ph.D. in chemistry, chemical engineering, physics or related field, and exceptionally strong skills in statistical mechanics and molecular simulation. Other qualifications of interest include Python expertise and experience with protein design algorithms. Competitive candidates will have a track record of scientific success in graduate study, creative and innovative thinking, experience working on teams, excellent writing skills, and a strong publication record. Best, ~~~~~~~~~~~~~~~~ Michael Shirts Associate Professor michael.shirts(a)colorado.edu<mailto:michael.shirts@colorado.edu> http://www.colorado.edu/lab/shirtsgroup/ Phone: (303) 735-7860 Office: JSCBB C123 Department of Chemical and Biological Engineering University of Colorado Boulder

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[Compbio-allhands] 5/31/18 Seminar with Andre Levchenko
by Flowers, Nicole 22 May '18

22 May '18

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/yqytD9 [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Andre Levchenko Yale Are signaling networks Rube Goldberg machines? Information Processing v. Network Structure May 31, 2018 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] two comp bio postdoc positions at A*STAR institute in Singapore
by Andrej Sali 20 May '18

20 May '18

http://www.bii.a-star.edu.sg/career/research/bmad.php -- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Associate Dean for Research, School of Pharmacy Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org

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