- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] 10/19/17 Seminar with Andre Levchenko
by Flowers, Nicole 16 Oct '17

16 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Andre Levchenko Yale Are signaling networks Rube Goldberg machines? Information processing vs. Network structure October 19, 2017 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 1

[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Jacobson, Matt 11 Oct '17

11 Oct '17

Begin forwarded message: From: Greg Lakatos <glakatos(a)zymeworks.com<mailto:glakatos@zymeworks.com>> Subject: Employment opportunity in computational protein modeling for a student or postdoc Date: October 11, 2017 at 1:56:20 PM PDT To: "matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>" <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Dear Professor Jacobson, I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com<http://www.zymeworks.com/>). Thank you for your time and assistance. Sincerely, Greg Lakatos Principal Scientist and Simulations Team Lead Zymeworks Inc. Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

1 0

[Compbio-allhands] Fwd: Employment opportunity in computational protein modeling for a student or postdoc
by Andrej Sali 11 Oct '17

11 Oct '17

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94143, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Administrative Assistant: Steve Ha, assistant(a)salilab.org, Tel +1 (415) 514-4228, 502-8084 Email sali(a)salilab.org; Web http://salilab.org > Begin forwarded message: > > From: Greg Lakatos <glakatos(a)zymeworks.com> > Subject: Employment opportunity in computational protein modeling for a student or postdoc > Date: October 11, 2017 at 1:59:15 PM PDT > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Professor Sali, > > I am writing on behalf of Zymeworks Inc., a computational biotechnology company located in Vancouver, Canada. Zymeworks has developed a set of computational protein modeling tools that have been used to design a novel antibody-based drug platform. As part of our on-going efforts to improve our tools, we are recruiting a scientist to join our modeling and simulations team. I have attached a copy of our current job posting and I would be grateful if you could forward it to members of your group, and any other students or postdocs who may be interested. More information about Zymeworks is available at our website (www.zymeworks.com <http://www.zymeworks.com/>). > > Thank you for your time and assistance. > > Sincerely, > > Greg Lakatos > Principal Scientist and Simulations Team Lead > Zymeworks Inc. > > Notice of Confidentiality: The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error please contact the sender immediately by return electronic transmission and then immediately delete this transmission including all attachments without copying, distributing or disclosing the same.

1 0

[Compbio-allhands] 10/12/17 Seminar with Peng Wu
by Flowers, Nicole 10 Oct '17

10 Oct '17

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/LF29og Peng Wu Scripps Chemoenzymatic glycan labeling; methods and applications October 12, 2017 L. Wang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Quantitative Student Group Series. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 Phone: (415) 502-6518 Fax: (415) 514-1546

1 0

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium, Thursday, October 5th, 6-9 pm
by magdalena K 03 Oct '17

03 Oct '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, A reminder of the upcoming event on Thursday. Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) Please register so that we can have an accurate headcount for the food order. http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37 <http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37> If you want to present a poser, please follow this link (space is limited): www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> Thanks and look forward to seeing you there. ——————————————————————————————- When: Thursday, October 5th, 6-9 pm Where: UCSF Mission bay, Genentech Hall Room GH114N If you would like to present a poster please visit: www.tiny.cc/UCSF <http://www.tiny.cc/UCSF> If you would like to register for the event only, please visit: www.tiny.cc/UCSF-Comp <http://www.tiny.cc/UCSF-Comp> 6-7pm Poster session (food and refreshments provided); 7-8pm Two talks 1) Huifen Chen (Genentech), Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project 2) Alan Cheng (Merck), Designing Beyond Rule of 5 Molecules for Tough Targets 8-9pm Poster session;

1 0

[Compbio-allhands] Reminder: Special seminar today: Vijay Pande, Fri Sep22, 3:30 pm, GH-N436A
by Pasquini, Millo 22 Sep '17

22 Sep '17

------------ From: Jacobson, Matt Sent: Monday, September 18, 2017 10:39 AM To: allhands(a)compbio.ucsf.edu<mailto:allhands@compbio.ucsf.edu>; Pharm Chem Faculty Subject: Special seminar: Vijay Pande, Fri Sep22, 3:30 pm, GH-N436A I will be hosting Vijay Pande for a special seminar Friday Sep 22, 3:30 pm, GH-N436A Many of you know Vijay. Over the past few years, he has split his time between Andreessen Horowitz and his academic lab at Stanford, which remains quite active: https://profiles.stanford.edu/vijay-pande?tab=publications. In this informal seminar, he will discuss his current interests, including his ongoing work on molecular dynamics methodology and applications, as well as newer interests in machine learning. Please join us! - Matt Millo Mau Pasquini MSO/Director of Administration Pharmaceutical Chemistry X6-1915

1 0

[Compbio-allhands] Fwd: Postdoc and PhD add
by Andrej Sali 21 Sep '17

21 Sep '17

> Begin forwarded message: > > From: "Heck, A.J.R. (Albert)" <A.J.R.Heck(a)uu.nl> > Subject: Postdoc and PhD add > Date: September 21, 2017 at 11:37:17 PM PDT > To: Brandon Ruotolo <bruotolo(a)umich.edu> > > Dear all, > > We do have some exciting vacancies in the group both at postdoc and PhD level. > Please notify potential candidates. > > Thank you, > > Albert > > Want to see the movie we made on the Cyanobacterial Clock system; www.hecklab.com/molecularclock/ <https://www.hecklab.com/molecularclock/> > > Want to know more on our proteomics research? Check out this movie <https://www.youtube.com/watch?v=1G6jTGAfgUc&feature=youtu.be>made in our laboratory > — > Prof. dr. Albert J. R. Heck > Scientific Director Netherlands Proteomics Centre and > Scientific Director Utrecht Institute for Pharmaceutical Sciences > > www.hecklab.nl <http://www.hecklab.nl/><http://www.hecklab.nl/ <http://www.hecklab.nl/>> > Biomolecular Mass Spectrometry and Proteomics > Bijvoet Center for Biomolecular Research and > Utrecht Institute for Pharmaceutical Sciences > Utrecht University > Padualaan 8, 3584 CH Utrecht, The Netherlands > E-mail: a.j.r.heck(a)uu.nl <mailto:a.j.r.heck@uu.nl><mailto:a.j.r.heck@uu.nl <mailto:a.j.r.heck@uu.nl>> > > Tel: +31-30-2536797 > >

1 0

[Compbio-allhands] Fwd: An announcement from COMP Together
by Jacobson, Matt 21 Sep '17

21 Sep '17

Begin forwarded message: From: <comp_together(a)acscomp.org<mailto:comp_together@acscomp.org>> Subject: An announcement from COMP Together Date: September 21, 2017 at 12:05:55 AM PDT To: Matthew Jacobson <matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu>> Reply-To: BinQing Wei <wei.binqing(a)gmail.com<mailto:wei.binqing@gmail.com>> The COMP Together champions in your area would like to announce the following event: Speaker: Huifen Chen (Genentech), Alan Cheng (Merck) Title: Posters and Talks by COMP Together & UCSF Pharm Postdocs Date: 2017-10-05 Time: 6:00 PM Event ID: 37 Sponsor: Gilead, Genentech Location Genentech 1700 4th St. GH114N UCSF Mission Bay San Francisco CA 94158 Description and Notes Please join us at this event jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) Schedule: 6 – 7 pm: Poster session (pizza and drinks provided) 7 – 7:30 pm: Talk #1 Title: Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project Speaker: Huifen Chen (Genentech) 7:30 – 8.00 pm: Talk #2 Title: Designing Beyond Rule of 5 Molecules for Tough Targets Speaker: Alan Cheng (Merck) 8 – 9 pm: Poster session Notes: Please note the new room #: GH114N Non-UCSF affiliated participants please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit: http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… If you would like to attend this COMP Together event, please visit the COMP website and register using the http://app.acscomp.org/COMP_Together/meeting_signup.php?event_id=37. If you have any questions about this event, please contact BinQing Wei atwei.binqing(a)gmail.com<mailto:atwei.binqing@gmail.com>. If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php

1 0

[Compbio-allhands] PH-OCS & ACS COMP Together Present: Computers in Chemistry Symposium, Thursday, October 5th, 6-9 pm
by magdalena K 21 Sep '17

21 Sep '17

Hello UCSF Pharmaceutical Chemistry Postdocs and Community, Please join us for the Computers in Chemistry Symposium, jointly organized by Bay Area Comp Together and UCSF Pharm Postdocs (Ph-ocs) When: Thursday, October 5th, 6-9 pm Where: Genentech Hall, Room GH114N If you would like to present a poster please visit: www.tiny.cc/UCSF If you would like to register for the event only, please visit: www.tiny.cc/UCSF-Comp 6-7pm Poster session (food and refreshments provided); 7-8pm Two talks 1) Huifen Chen (Genentech), Twists and Turns: Challenges and Opportunities of Supporting an Ion Channel Drug Discovery Project 2) Alan Cheng (Merck), Designing Beyond Rule of 5 Molecules for Tough Targets 8-9pm Poster session; Notes: Please note the new room #: GH114N Non-UCSF affiliated participants please enter through the main entrance of Genentech Hall (600 16th St., San Francisco, CA 94158) and sign in at the security desk. Public parking is available at the UCSF Mission Bay surface lots. For more information, please visit: http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p… <http://campuslifeservices.ucsf.edu/transportation/services/parking/public_p…> If you have any questions about this event, please contact BinQing Wei atwei.binqing(a)gmail.com <mailto:atwei.binqing@gmail.com>. If you would like to COMP register for Together, please visit http://app.acscomp.org/COMP_Together/reg_form.php If you would like to update your COMP Together registration or unsubscribe, please visit http://app.acscomp.org/COMP_Together/reg_update/update_login.php <http://app.acscomp.org/COMP_Together/reg_update/update_login.php>

1 0

[Compbio-allhands] Fwd: Two Wellcome Trust Funded Post-Doctoral Positions Available
by Andrej Sali 20 Sep '17

20 Sep '17

> Begin forwarded message: > > From: Sarah-jane Scard <sarah-jane.scard(a)bioch.ox.ac.uk> > Subject: Two Wellcome Trust Funded Post-Doctoral Positions Available > Date: September 20, 2017 at 3:26:43 AM PDT > To: "'sali(a)salilab.org'" <sali(a)salilab.org> > > Dear Andrej, > > We have two Wellcome Trust-funded post-doctoral positions currently available, as part of a newly funded project called “LipID”. These positions are for 3 years each, with the possibility of extension to 5 years. > > The aim of the project is to study and characterise lipid interactions with membrane proteins through multi-scale molecular simulation. > > The deadline for applications is 12:00 (UK) on Friday the 13th October. > > Further details can be found here: > http://www.bioch.ox.ac.uk/aspsite/index.asp?sectionid=vacancies&job=130967 <http://www.bioch.ox.ac.uk/aspsite/index.asp?sectionid=vacancies&job=130967> > > Please forward to any students or postdocs in your group that you think would be interested. > > Many thanks & best wishes, > > Mark Sansom & Phill Stansfeld > > > > > Best wishes > > Mark > > ========================================================================== > Prof. Mark S.P. Sansom > David Phillips Professor of Molecular Biophysics & Head of Department > Dept. of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU > > e-mails: > mark.sansom(a)bioch.ox.ac.uk <mailto:mark.sansom@bioch.ox.ac.uk> - for research & teaching > > website: http://sbcb.bioch.ox.ac.uk <http://sbcb.bioch.ox.ac.uk/> > head(a)bioch.ox.ac.uk <mailto:head@bioch.ox.ac.uk> - for Head of Department's business > > phone: > (0)1865-613306 (personal office) > (0)1865-613212 (Head of Department's office) > > PA: Ms. Sarah-jane Scard (0)1865-613212; head(a)bioch.ox.ac.uk <mailto:head@bioch.ox.ac.uk>

1 0