- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Fwd: Mobley lab hiring postdoc
by Jacobson, Matt 05 Apr '19

05 Apr '19

— Matt Begin forwarded message: From: David Mobley <dmobley(a)uci.edu<mailto:dmobley@uci.edu>> Subject: Mobley lab hiring postdoc Date: April 5, 2019 at 9:46:35 AM PDT To: David Mobley <dmobley(a)mobleylab.org<mailto:dmobley@mobleylab.org>> Dear Colleagues, I'm looking for a postdoc to start late summer or early fall in the area of free energy calculations and applications to problems in pharmaceutical drug discovery, ideally someone with significant software development experience and expertise with MD and/or Monte Carlo. Please pass along this link to anyone suitable you might be aware of: https://mobleylab.org/2019/04/05/postdoc-position-available-on-free-energy-…<https://protect2.fireeye.com/url?k=52e192f2-0ea1ffa4-52e1b5ef-0cc47adb57f0-…> Thanks so much, David Mobley -- David Mobley Professor Department of Pharmaceutical Sciences Department of Chemistry 3134B Natural Sciences I University of California, Irvine Irvine, CA 92697 dmobley(a)uci.edu<mailto:dmobley@uci.edu> work (949) 824-6383 cell (949) 385-2436

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[Compbio-allhands] 4/25/19 Seminar with Christine Jacobs-Wagner
by Flowers, Nicole 04 Apr '19

04 Apr '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/TATvuI [/var/folders/7s/ln22sh2n38z5pq0vj15rm0tm0000gq/T/com.microsoft.Outlook/WebArchiveCopyPasteTempFiles/cidimage001.png(a)01D3C747.62849D60] Co-Sponsored by The Gladstone Center for Cell Circuitry Christine Jacobs-Wagner Yale Governing and organizational principles of transcription and translation: Lessons from bacteria April 25, 2019 F. Chang, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] COMP together event on 11th April @ 6pm (GH N-114)
by isha singh 01 Apr '19

01 Apr '19

Hi all, Please join us at the COMP-together event on 11th April (6 pm) jointly organized by ACS Bay Area "Comp Together" and UCSF Pharm Postdocs. *Talks begin @6 pm*: *Sereina Riniker (ETH Zürich)*: Machine Learning with and for Molecular Dynamics Simulations *Hanneke Jansen (Novartis, Emeryville)*: Effective Exploration of Chemical Space in Hit-Finding Location 1700 4th St. UCSF Mission Bay *GH-N114 (Genentech Hall)* San Francisco CA 94158 Sponsored by Gilead and the COMP Division of the ACS Thank you. Best, Isha Isha Singh, PhD Post Doctoral Research Fellow @ Shoichet Lab Department of Pharmaceutical Chemistry - UCSF 1700 4th Street, room N501 San Francisco, CA 94158 USA Tel +1-415-514-4253

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[Compbio-allhands] Yurii Moroz of Enamine visiting Friday April 12th
by John Irwin 28 Mar '19

28 Mar '19

Dear Compbio Allhands If you are or are planning to become Enamine customers, Yurii Moroz, head of the Enamine REAL make-on-demand 710 M and growing project will be visiting us in two weeks, Friday April 12. He will be visiting with one or two colleagues. If you would like to meet Yurii, please write me with a time that works for you and I will try to arrange. Yurii will hold "Office Hours" in BH501 from 11-12 and 3-4 pm where you may simply drop by to chat. If you plan to do this, please let me know in a one-line email so we can plan. John John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] Fwd: postdoc positions
by Andrej Sali 28 Mar '19

28 Mar '19

> Begin forwarded message: > > From: Pedro Beltrao <pbeltrao(a)ebi.ac.uk> > Subject: postdoc positions > Date: March 28, 2019 at 4:13:26 AM PDT > To: undisclosed-recipients:; > > Dear colleagues, > > I am currently recruiting for 2 funded bioinformatics postdoc positions and I would be grateful if you could forward this to members of your team that may be a fit to such a position. > > We are hiring for any topic that relates to the interest of the group. This includes large scale studies of phosphorylation/ubiquitination and mutation data and/or genotype to phenotype analysis, including cancer genomics. Bioinformatics experience is required but I would also welcome applications for combined wet/dry positions. > > https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01381&newlang=1&pos[]=… <https://www.embl.de/jobs/searchjobs/index.php?ref=EBI01381&newlang=1&pos[]=…> > > Although the closing date is on the 18 of April, I am happy to wait for strong applicants to join later in the year or even at the start of next year. > > thank you in advance > Pedro

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[Compbio-allhands] 4/4/19 Seminar with Zan Luthey-Schulten
by Flowers, Nicole 26 Mar '19

26 Mar '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/TATvuI Zan Luthey-Schulten University of Illinois at Urbana-Champaign Towards Simulating a Minimal Bacterial Cell: Integration of Experiment and Theory April 4, 2019 W. Marshall, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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[Compbio-allhands] Schrodinger software workshop @ UCSF - April 11
by John Irwin 13 Mar '19

13 Mar '19

Please register to reserve your spot! (free) https://www.eventbrite.com/e/schrodinger-workshop-at-uc-san-francisco-regis… Morning Session: Life-Sciences Molecular Dynamics Time: 9:30am - 12:00pm Description: This workshop is designed to enable users to run protein molecular dynamics simulations effectively using best practices. We cover basic workflows which include how to build systems appropriate for MD, running MD, basic and advanced trajectory analysis tools, and the architecture and configuration of Desmond input and output files. Finally, we will consider the use of binding-pose metadynamics as an approach for improved pose prediction within the context of a protein-ligand complex. Familiarity with Maestro is recommended. More details on MD can be found at: https://www.schrodinger.com/desmond Afternoon Session: Compound Library Preparation and Ligand-based Virtual Screening Time: 1:00pm - 3:30pm Description: This half-day workshop will cover two interrelated toolsets in computer-aided drug design that rely on the use of chemical descriptors to shape and screen compound libraries. The first part of the workshop will cover compound library design and preparation for virtual screening. During the session, we will discuss the selection and enumeration of virtual compound libraries followed by the shaping and preparation of those libraries for virtual screening. Hands-on tutorials with Schrödinger’s enumeration and filtering tools will be provided. The second part of the workshop will be an introduction to pharmacophore-based virtual screening with Schrödinger’s Phase. More details on Phase can be found at: https://www.schrodinger.com/phase John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] 10 am TODAY seminar: Design and synthesis of novel building blocks for drug discovery
by John Irwin 13 Mar '19

13 Mar '19

Seminar by Pavel Mykhailiuk, CSO Enamine, Kyiv "Design and synthesis of novel building blocks for drug discovery." Genentech Hall S-536A Weds March 13, 2019, 10-11 am TODAY Host: John Irwin John Irwin UCSF Pharmaceutical Chemistry http://irwinlab.compbio.ucsf.edu

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[Compbio-allhands] Seminar: Pavel Mykhailiuk of Enamine - Weds March 13 2019 . 10 am
by John Irwin 11 Mar '19

11 Mar '19

Seminar by Pavel Mykhailiuk, CSO Enamine, Kyiv "Design and synthesis of novel building blocks for drug discovery." Genentech Hall S-536A Weds March 13, 2019, 10-11 am Host: John Irwin

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[Compbio-allhands] 3/14/19 Seminar with Rachel Klevit
by Flowers, Nicole 08 Mar '19

08 Mar '19

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, 12 Noon Genentech Hall Auditorium Livestream: http://tiny.ucsf.edu/VB1vGc Rachel Klevit Yale From One to Many: How Ubiquitin Regulates (almost) Everything March 14, 2019 S. Dickinson, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. -- Nicole Takesono Flowers BMI, BP, CCB, & PSPG Graduate Program Assistant UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94143 P: 415.502.6518

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