- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] 12/1/22 BBC Seminar with Jin Zhang Postponed
by Flowers, Nicole 17 Nov '22

17 Nov '22

The originally scheduled seminar on December 1, 2022 with Jin Zhang, PhD, of UCSD has been postponed until April 20, 2023. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] Fwd: Job Opportunities: Computational Chemist and Deep Learning Scientist
by Brian Shoichet 15 Nov '22

15 Nov '22

FYI ---------- Forwarded message --------- From: David Baker <dabaker(a)uw.edu> Date: Mon, Nov 14, 2022 at 10:39 PM Subject: Fwd: Job Opportunities: Computational Chemist and Deep Learning Scientist To: Brian Shoichet <shoichet(a)cgl.ucsf.edu>, <john.chodera(a)choderalab.org> Hi Brian and John, I hope you are doing well! Please pass these job postings on to anybody in your groups who might be interested. Patrick and Adam are great so I think it could be a lot of fun and hopefully impactful. Best regards, David Begin forwarded message: *From: *Adam Moyer <adam(a)vilyatx.com> *Subject: **Job Opportunities: Computational Chemist and Deep Learning Scientist* *Date: *November 14, 2022 at 11:37:09 AM PST *To: *David Baker <dabaker(a)uw.edu>, Patrick Salveson <patrick(a)vilyatx.com>, Gaurav Bhardwaj <gauravb(a)uw.edu>, Nao Hiranuma <nao(a)vilyatx.com> Hi all, I am excited to share two computational scientist positions at Vilya, a platform-based computational design macrocycle therapeutics company based in Seattle WA. It was founded from the structure-based molecular design developments in David Baker’s lab at the University of Washington. See a recent publication by one of our co-founders: https://www.cell.com/cell/pdf/S0092-8674(22)00922-9.pdf [cell.com] <https://urldefense.com/v3/__https://www.cell.com/cell/pdf/S0092-8674(22)009…> Structure-based computational molecular design is a core tenet of Vilya. If you love thinking about the energetics of non-covalent interactions, conformational entropy, and writing innovative code to design therapeutics, join the team! Job descriptions are attached. Please feel free to reach out to me at adam(a)vilyatx.com if you are interested. Thanks, Adam -- Adam Moyer, Ph.D. (he/him/his) vilyatx.com [vilyatx.com] <https://urldefense.com/v3/__https://vilyatx.com/__;!!K-Hz7m0Vt54!j5OoX_Ds0Y…> -- Brian Shoichet, Professor, UCSF *http://www.bkslab.org/contact.php <http://www.bkslab.org/contact.php>*

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[Compbio-allhands] 11/17/22 BBC Seminar with Peijun Zhang, PhD
by Flowers, Nicole 10 Nov '22

10 Nov '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> HARC Speaker Peijun Zhang, Ph.D. University of Oxford Visualizing virus infection in cells by cryoEM November 17, 2022 C. Craik, Host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 11/17/22 BBC Seminar with Mohammed AlQuraishi, PhD
by Flowers, Nicole 10 Nov '22

10 Nov '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> HARC Speaker Peijun Zhang, Ph.D. University of Oxford Visualizing virus infection in cells by cryoEM November 17, 2022 C. Craik, Host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] Register for Advanced Cytoscape Automation
by Zainab Yusuf-Sada 07 Nov '22

07 Nov '22

Data Science Training Program Advanced Cytoscape Automation Alex Pico November 15, 2022 1–4pm Online Learn how Cytoscape can be integrated into programmatic workflows and pipelines using R or Python. LEARN MORE AND REGISTER <https://gladstone.org/events/advanced-cytoscape-automation-1> Cordially, *Zainab Yusuf Sada, *(she/her/hers) Executive Administrator Director's Office of Data Science & Biotechnology *Gladstone Institutes* *Science Overcoming Disease*gladstone.org <http://www.gladstoneinstitutes.org/> Follow us on Twitter <https://twitter.com/GladstoneInst> Like us on Facebook <https://www.facebook.com/gladstoneinstitutes/>

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[Compbio-allhands] 11/10/22 NO BBC SEMINAR
by Flowers, Nicole 04 Nov '22

04 Nov '22

There is no BBC Seminar next week, Thursday, November 10. We will resume the following week on November 17. Nicole Takesono Flowers Biophysics Graduate Program Manager UCSF MC 2240 600 16th St. Genentech Hall Room N474D San Francisco, CA 94158-2517 Phone: (415) 502-6518

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[Compbio-allhands] 11/3/22 BBC Seminar with Mohammed AlQuraishi, PhD
by Flowers, Nicole 28 Oct '22

28 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Mohammed AlQuraishi, PhD Columbia OpenFold: Lessons learned and insights gained from rebuilding AlphaFold2 November 3, 2022 B. Orr, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/27/22 BBC Seminar with Greg Bowman, PhD
by Flowers, Nicole 21 Oct '22

21 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Greg Bowman, PhD University of Pennsylvania Protein dynamics and energy landscape design October 27, 2022 M. Jacobson, host Calendar also available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Subscribe to the BBC Seminar Series Calendar! Use this URL to access this calendar from a web browser.<https://urldefense.com/v3/__https://calendar.google.com/calendar/embed?src=… > Use this address to access this calendar from other applications.<https://urldefense.com/v3/__https://calendar.google.com/calendar/u/1?cid=cz… > Use this URL to view and open the calendar in iCal and/or Outlook.<https://urldefense.proofpoint.com/v2/url?u=https-3A__ucsf.us20.list-2Dmanag…> To view recorded lectures, click here: https://lecture.ucsf.edu/ets/Channel/0671978c87c64a7db9251cff75b922505f

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[Compbio-allhands] 10/20/22 Clements Lecture with Daniel Asarnow, PhD
by Flowers, Nicole 17 Oct '22

17 Oct '22

BBC Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Systems Thursdays, Noon Genentech Hall Byers Auditorium Livestream: http://tiny.ucsf.edu/AbdeVL <http://tiny.ucsf.edu/AbdeVL> Biophysics Alumnus Daniel Asarnow, PhD Clements Lecture Membrane unanchored - how Dispatched releases lipid-modified Hedgehog in animal development October 20, 2022 Y. Chang, Host John Clements is one of the founding members of the UCSF Biophysics graduate group, and he endowed a Biophysics thesis prize in 1996 to be awarded to the Biophysics graduate whose thesis "represents the highest standards of scholarship" filed during the academic year. The award carries a cash prize. BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology, and the Gladstone Center for Cell Circuitry. Calendar available at https://ccb.ucsf.edu/seminars-events/bbc-seminar-series, https://biophysics.ucsf.edu/seminars-events/bbc-seminar-series, https://bioinformatics.ucsf.edu/seminars-events/bbc-seminar-series

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[Compbio-allhands] Fwd: Structural Bioinformatics position at Interline
by Andrej Sali 15 Oct '22

15 Oct '22

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