- compbio-allhands@cgl.ucsf.edu - RBVI Mailing Lists

[Compbio-allhands] Fwd: Post-doc with Rhoades and Miranker
by Andrej Sali 20 Jan '14

20 Jan '14

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Andrew Miranker <Andrew.Miranker(a)YALE.EDU> > Subject: Post-doc with Rhoades and Miranker > Date: January 20, 2014 at 8:37:04 AM PST > To: Andrej Sali <sali(a)salilab.org> > > Dear Andrej, > > I am looking to recruit a post-doc in the near future for a position joint between myself and the lab of > Prof Liz Rhoades. I've attached a job-ad below. > Please encourage your graduating students to send me an application and/or come find Prof Rhoades > or myself at the Biophysical Society Meeting next month. > > Sincerely, > > Andrew > > > Andrew Miranker > Professor | Office: (203) 432-8954 > Dept of Molecular Biophysics & Biochemistry | Lab: (203) 432-5563 > Yale University | Assistant: (203) 432-5708 > 266 Whitney Avenue / Bass 318 | Fax: (203) 432-8492 > PO Box 208114 | Email: andrew.miranker(a)yale.edu > New Haven, CT 06520-8114 | Web: www.yale.edu/miranker/ > > **Please note. This is my professional email address and as such is read and > managed by my assistant, Lisa Adams (lisa.adams(a)yale.edu) >

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[Compbio-allhands] postdoc jobs ad in Singapore
by Andrej Sali 17 Jan '14

17 Jan '14

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org

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[Compbio-allhands] Fwd: Reminder for TDT competition
by Jacobson, Matt 12 Jan '14

12 Jan '14

-- Matt Sent from my iPhone Begin forwarded message: From: Hanneke Jansen <hanneke(a)tdti.org<mailto:hanneke@tdti.org>> Date: January 12, 2014, 3:10:08 PM PST To: "'Jacobson, Matt'" <Matt.Jacobson(a)ucsf.edu<mailto:Matt.Jacobson@ucsf.edu>> Subject: Reminder for TDT competition Dear Matt, A quick reminder that the deadline for the second round of the TDT competition is coming up! There are four exciting challenges that focus on developing and disseminating computational workflows for drug discovery of neglected diseases with a premium on reproducibility (use freely available software tools!). Note that one of these challenges is an open innovation challenge which is a great place to submit truly novel workflows that can be exemplified on any publicly available dataset. The other three challenges are structured around specific questions with held-out test data to compare across the various submissions. Three cash prizes - plus partial reimbursement of travel - will be awarded! Winners are required to present their work at the TDT Award symposium during the Fall 2014 ACS National Meeting in San Francisco, California. Detailed information about the 2014 Competition can be found here: http://www.TDTproject.org/2014-competition.html Submissions deadline is February 3, 2014. Please remind people in your group and let me know if there are any questions. Ciao, Hanneke ++++++++++++++++++++++++++ Hanneke Jansen Hanneke(a)TDTi.org<mailto:Hanneke@TDTi.org> 415.336.3036 (cell)

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[Compbio-allhands] 1/16/14 Seminar with Kevin Healy
by Flowers, Nicole 10 Jan '14

10 Jan '14

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Kevin Healy UC Berkeley Disease-Specifric Microphysiological Human Organ Models: the Future of Personalized Medicine? January 16, 2014 B. Conklin, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Fwd: Very Exciting Postdoctoral Position Available
by Andrej Sali 09 Jan '14

09 Jan '14

Sent from my iPhone Begin forwarded message: > From: Klaus Schulten <kschulte(a)ks.uiuc.edu> > Date: January 9, 2014 at 1:25:50 PM PST > To: mike.himmel(a)nrel.gov, michael.crowley(a)nrel.gov, smithjc(a)ornl.gov, rwoods(a)ccrc.uga.edu, fsl+3(a)psu.edu, skaf(a)iqm.unicamp.br, ipolikarpov(a)ifsc.usp.br, pascutti(a)biof.ufrj.br, olson(a)scripps.edu, ramaro(a)ucsd.edu, jmccammon(a)ucsd.edu, sali(a)salilab.org, daggett(a)uw.edu, jonuchic(a)rice.edu, tolya(a)rice.edu, jpma(a)bcm.tmc.edu, cecilia(a)rice.edu, mpettitt(a)utmb.edu, brookscl(a)umich.edu, brb(a)mail.nih.gov, feig(a)msu.edu, tom.cheatham(a)pharm.utah.edu, case(a)biomaps.rutgers.edu, mlklein(a)temple.edu, twoolf(a)jhu.edu, thirum(a)umd.edu, pande(a)stanford.edu, haw2002(a)med.cornell.edu, Elizabeth.rhoades(a)yale.edu, tieleman(a)ucalgary.ca, treptow(a)unb.br, s.j.marrink(a)rug.nl, mv245(a)cam.ac.uk, g-schatz(a)northwestern.edu, bahar(a)pitt.edu, jerome.henin(a)ibpc.fr, david.perahia(a)lbpa.ens-cachan.fr, grace.brannigan(a)rutgers.edu, matteo.dalperaro(a)epfl.ch, wah(a)bcm.edu, roberto.lins(a)ufpe.br, thereza.soares(a)ufpe.br, mark.sansom(a)bioch.ox.ac.uk, cui(a)chem.wisc.edu, hgrubmu(a)gwdg.de, laio(a)sissa.it, dennis.salahub(a)ucalgary.ca, modesto.orozco(a)irbbarcelona.org, straub(a)bu.edu, itamar(a)ime.eb.br, schlick(a)nyu.edu, amackere(a)rx.umaryland.edu, rbb24(a)cam.ac.uk, pastorr(a)nhlbi.nih.gov, ddmmzz(a)pitt.edu, andricio(a)umich.edu, cbp(a)purdue.edu, roux(a)uchicago.edu, dinner(a)uchicago.edu, gavoth(a)uchicago.edu, vandervaart(a)asu.edu, chapmami(a)ohsu.edu, dabaker(a)uw.edu, gianni.defabritiis(a)upf.edu, p.g.bolhuis(a)uva.nl, christoph.dellago(a)univie.ac.at, erik.lindahl(a)scilifelab.se, Lennart.Nilsson(a)ki.se, stefan.fischer(a)iwr.uni-heidelberg.de, bgroot(a)gwdg.de, gerhard.hummer(a)biophys.mpg.de, caflisch(a)bioc.uzh.ch, takada(a)biophys.kyoto-u.ac.jp > Subject: Very Exciting Postdoctoral Position Available > > Dear Colleagues, > > > The Theoretical and Computational Biophysics Group of the University of Illinois is seeking applications for a postdoctoral research associate position in theoretical biophysics. > > The position is funded by the Energy Biosciences Institute (www.energybiosciencesinstitute.org) to guide through molecular dynamics simulations the development of enzymes needed in second generation biofuel production. These biofuels are made from degradation of agricultural waste, e.g., of wood chips, a process which involves use of redesigned bacterial enzymes. The redesign aims at preventing inhibition of the used enzymes by process products and at enhancing efficiency. The work will be performed in collaboration with experimentalists both at the University of California – Berkeley and at the University of Illinois Urbana-Champaign. The postdoc will interact with first rate researchers in polymer science, bacteriology, plant science and bioengineering and be involved in starting an exciting, completely new research area. Pursuing in connection with biofuel studies bacterial degradation of biomass in general will be encouraged. The new postdoc will join another Energy Biosciences Institute postdoc in my group and will enjoy a well equipped research laboratory and intense research team. > > More information is available in our website (http://tcbg.illinois.edu) and also in the attached announcement. > > Please feel free to share this announcement. > > Best regards, > > Klaus Schulten >

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[Compbio-allhands] Fwd: Happy New Year and hiring at new company
by Jacobson, Matt 09 Jan '14

09 Jan '14

Job opportunity ... Begin forwarded message: I’ve recently moved from Amazon because this is a compelling opportunity. IO is the global leader in software-defined data centers, and has pioneered the next-generation of data center infrastructure technology and Intelligent Control. We are a mature startup with over 600 clients, including for example Goldman Sachs. The Applied Intelligence team in San Francisco uses predictive modeling, analytics and simulation to impact both design and intelligent control. Are there any great people that spring to mind? I will attach the two job descriptions and may I ask you to let people know about the opportunity? Thank you and I’d love to catch up soon, Jim James Arnold, Ph.D. | Director Applied Intelligence Software M +1.415.216.5655 E jarnold(a)io.com<mailto:jarnold@io.com> | www.io.com<http://www.io.com> The communication contained in this e-mail is confidential and is intended only for the named recipient(s) and may contain information that is privileged, proprietary, attorney work product or exempt from disclosure under applicable law. If you have received this message in error, or are not the named recipient(s), please note that any form of distribution, copying or use of this communication or the information in it is strictly prohibited and may be unlawful. Please immediately notify the sender of the error, and delete this communication including any attached files from your system. Thank you for your cooperation. Matthew P. Jacobson Professor, Department of Pharmaceutical Chemistry Department of Bioengineering and Therapeutic Sciences California Institute for Quantitative Biosciences Institute for Neurodegenerative Diseases Director, Graduate Group in Biophysics UCSF MC 2540 1700 4th St., Byers Hall, Room 408E San Francisco, CA 94158-2330 matt.jacobson(a)ucsf.edu<mailto:matt.jacobson@ucsf.edu> jacobsonlab.org<http://jacobsonlab.org>

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[Compbio-allhands] Fwd: Lunenfeld Tanenbaum Research Institute PI Search
by Andrej Sali 08 Jan '14

08 Jan '14

-- Andrej Sali, Ph.D. Professor, Department of Bioengineering and Therapeutic Sciences Department of Pharmaceutical Chemistry California Institute for Quantitative Biosciences University of California, San Francisco UCSF MC 2552 Byers Hall Room 503B 1700 4th Street San Francisco, CA 94158-2330, USA Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Assistant: Ms. Hilary Mahon, hilary(a)salilab.org, Tel +1 (415)514-4228; Lab +1 (415) 514-4233, 4258 Email sali(a)salilab.org; Web http://salilab.org Begin forwarded message: > From: Donna Doherty <doherty(a)lunenfeld.ca> > Subject: Lunenfeld Tanenbaum Research Institute PI Search > Date: January 8, 2014 at 11:30:30 AM PST > To: "sali(a)salilab.org" <sali(a)salilab.org> > > Dear Professor Sali, > > Please find enclosed information related to recruitment of scientists at the Lunenfeld Tanenbaum Research Institute at Mt. Sinai Hospital. Please feel free to forward this information to your colleagues. > > Sincerely, > > > Donna Doherty on behalf of Professors Jim Woodgett, Dan Durocher, and Daniel Drucker >

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[Compbio-allhands] 1/9/14 Seminar with Wah Chiu
by Nicole Takesono Flowers 06 Jan '14

06 Jan '14

BBC Graduate Programs Seminar Series Bioinformatics Biophysics Chemistry & Chemical Biology Complex Biological Sytems Thursdays, 12 Noon Genentech Hall Auditorium Simulcast to Parnassus Campus S-161 Wah Chiu Baylor College of Medicine Structures of Viruses Inside and Outside the Host Cells January 9, 2014 Y. Cheng, Host BBC Seminars are supported by the Biophysics, Bioinformatics, and Chemistry & Chemical Biology IFM, Department of Pharmaceutical Chemistry, QBC, HARC Center, and the Center for Systems and Synthetic Biology. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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[Compbio-allhands] Mini-course: Information Theory and Biology
by David Sivak 03 Jan '14

03 Jan '14

Hi. You ever noticed how people around here use the word "Information" like it's going out of style? You ever wondered what's the big deal? We (David Sivak, Raj Bhatnagar, Michael Chevalier) plan on getting to the heart of all that in a mini-course at Mission Bay this spring on "Information Theory and Biology." If you have any interest in possibly taking this mini-course, please help us get a sense of numbers and backgrounds by sharing a little information [sorry] about yourself at: https://docs.google.com/forms/d/1HtENxOKiXyZXyzq9-4zoK0qWpTklQHLPpZC-UKqQYA… Feel free to pass along to other interested parties. Apologies for any mailing list duplication... Thanks, David -- David Sivak Systems Biology Fellow University of California, San Francisco david.sivak(a)gmail.com davidsivak.com 510-541-9006

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[Compbio-allhands] SAVE THE DATE- PETER A. KOLLMAN LECTURESHIP - April 3, 2014
by Nicole Takesono Flowers 20 Dec '13

20 Dec '13

SAVE THE DATE- THURSDAY, APRIL 3, 2014 AT 12:00 PM PETER A. KOLLMAN LECTURESHIP GENENTECH HALL BYERS AUDITORIUM - UCSF MISSION BAY CAMPUS SIMULCAST TO PARNASSUS CAMPUS LIBRARY 221 Reception in Byers Hall 5th Floor Lounge at 3:30 Please see attached flyer. Nicole Takesono Flowers CCB Graduate Program Assistant AMBER Software Administrator UCSF MC 2280 600 16th St. Genentech Hall Room 522 San Francisco, CA 94158-2517 Phone: (415) 502-6518 Fax: (415) 514-1546

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