Good Evening
I wanted to asked about compatibility and installation issues.
I am currently using a Chromebook with Linux Debian 11 (Bootstrap) and I am trying to get ChimeraX 1.7 installed onto it. I keep coming into errors when I try to run it by the way specified on the site.
For info: "
Download is a tarball of the chimerax application directory. Make symbolic link to executable in chimerax/bin/ChimeraX. Do not put on path. It may require additional libraries and/or older versions of libraries to be installed. More Info...built: 2023-12-19 02:49:21 PST
committed: 2023-12-19 00:36:03 PST
size: 584.1 MiB
md5: d44f016e787d45621a077b04852ab66c
sha256: 005bd0b6942b5e8c3a32ad39bb6ea1118da173217c2c0c51d3e0c665913e6c3a
I used the Generic Linux download and with all i could look up with and try to figure out with ChatGPT, I get this when I try to run it:
"NOTE: available bundle cache has not been initialized yet
WARNING: Traceback (most recent call last):
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/core/toolshed/info.py", line 376, in initialize
api._api_caller.initialize(api, session, self)
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py", line 1294, in initialize
return cls._get_func(api, "initialize")(session, bi)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/__init__.py", line 31, in initialize
from .ui.segmentation_mouse_mode import (
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/ui/segmentation_mouse_mode.py", line 20, in <module>
from .segmentations import SegmentationTool
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/ui/segmentations.py", line 55, in <module>
from ..ui.orthoplanes import Axis
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/ui/orthoplanes.py", line 51, in <module>
from ..graphics import (
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/graphics/__init__.py", line 1, in <module>
from .view import OrthoplaneView
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/dicom/graphics/view.py", line 6, in <module>
from chimerax.graphics import gllist
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/graphics/gllist.py", line 71, in <module>
wrap_opengl_routines(globals())
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/graphics/gllist.py", line 22, in wrap_opengl_routines
from OpenGL import GL
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/OpenGL/GL/__init__.py", line 4, in <module>
from OpenGL.GL.VERSION.GL_1_1 import *
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_1.py", line 14, in <module>
from OpenGL.raw.GL.VERSION.GL_1_1 import *
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/OpenGL/raw/GL/VERSION/GL_1_1.py", line 7, in <module>
from OpenGL.raw.GL import _errors
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/OpenGL/raw/GL/_errors.py", line 4, in <module>
_error_checker = _ErrorChecker( _p, _p.GL.glGetError )
^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'glGetError'
ERROR: Bundle 'ChimeraX-Dicom' custom initialization failed
NOTE: Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/core/__main__.py", line 1069, in <module>
exit_code = init(sys.argv)
^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/core/__main__.py", line 722, in init
sess.ui.build()
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 191, in build
self.main_window = mw = MainWindow(self, self.session)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 445, in __init__
self.graphics_window = g = GraphicsWindow(self._stack, ui, stereo)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/ui/graphics.py", line 36, in __init__
oc = OpenGLContext(self, ui.primaryScreen(), use_stereo = stereo)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 60, in __init__
_initialize_pyopengl() # Set global GL module.
^^^^^^^^^^^^^^^^^^^^^^
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 375, in _initialize_pyopengl
import OpenGL.GL
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/OpenGL/GL/__init__.py", line 4, in <module>
from OpenGL.GL.VERSION.GL_1_1 import *
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/OpenGL/GL/VERSION/GL_1_1.py", line 14, in <module>
from OpenGL.raw.GL.VERSION.GL_1_1 import *
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/OpenGL/raw/GL/VERSION/GL_1_1.py", line 7, in <module>
from OpenGL.raw.GL import _errors
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/OpenGL/raw/GL/_errors.py", line 4, in <module>
_error_checker = _ErrorChecker( _p, _p.GL.glGetError )
^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'glGetError'
BUG: AttributeError: 'NoneType' object has no attribute 'glGetError'
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-
packages/OpenGL/raw/GL/_errors.py", line 4, in
_error_checker = _ErrorChecker( _p, _p.GL.glGetError )
^^^^^^^^^^^^^^^^
_See log for complete Python traceback._
NOTE: Exception ignored in: <function OpenGLContext.__del__ at 0x7e24611d5a80>
Traceback (most recent call last):
File "/home/rogercoleucf/chimerax-1.7/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 85, in __del__
if not self._deleted:
^^^^^^^^^^^^^
AttributeError: 'OpenGLContext' object has no attribute '_deleted'"
This is as far as i could get
I apologize about the lengthy message, and thank you for any assistance you can give
-CJ
