Hello,
I'm trying to visualize the hydrogen bonds of a small molecule in water over the trajectory of a molecular dynamics simulation, using the following commands:
alias evalhb hide solvent; hb :LIG reveal true coordsets false makePseudobonds true ; view
perframe evalhb; coordset #1 1,20 holdsteady :LIG; wait 20; ~perframe
However, this does not work as expected. Could you please help me with this issue?
Thank you,
Ute
