- ChimeraX-users - RBVI Mailing Lists

Navigating to a OneDrive folder prompts a wholesale download
by David Bhella 20 Nov '25

20 Nov '25

Dear ChimeraX users and team, I am wondering if anyone can advise how to stop OneDrive trying to download the contents of every folder I navigate through when trying to e.g. save an image or open a file? I haven’t seen this behaviour with any other software, but as I maintain a lot of my work on OneDrive, it would be nice to be able to interact directly with the working folder. At the moment I need to work on a local folder and then copy files across when saving, and open files through finder rather than the ChimeraX dialog, otherwise my Mac locks up while it tries to download everything in every folder it sees. Thanks, D David Bhella Professor of Structural Virology Director, Scottish Centre for Macromolecular Imaging Associate Director, MRC - University of Glasgow Centre for Virus Research +44 (0)141 330 3685<tel:+441413303685> [cid:image002.png@01DAE420.99202CC0] [Logo, company name Description automatically generated]

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AI spam
by Eric Pettersen 18 Nov '25

18 Nov '25

Hi all, We have made some further adjustments to try to prevent these AI spams posts you have seen over the last few days. We are hopeful, but you never can be sure... --Eric Eric Pettersen UCSF Computer Graphics Lab

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ChimeraX languages
by Nicolas Caudron - IA-IPR SVT 18 Nov '25

18 Nov '25

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Emirates Estate
by soradae＠mailbox.in.ua 18 Nov '25

18 Nov '25

Real Estate in UAE https://emirates.estate/

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Listing cavity contacting residues
by George Tzotzos 17 Nov '25

17 Nov '25

Hi everyone, I’ve used kvfinder and the command: coulombic (#1 & protein) surfaces #1.1.1 offset -1 select #!1 & (#!1.1.1 @< 3.5)185 atoms, 163 bonds, 34 residues, 1 model selected Is there a way to list the 34 residues? Have a good day George

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Colouring a morph anim
by Pranav Shah 17 Nov '25

17 Nov '25

Hi Team, I am seeking advice on the most effective way to visualize a morphing trajectory within ChimeraX. Specifically, I have a multi-chain model transitioning (morphing) from its starting state to its final state, and I would like to know if there is a method in ChimeraX to apply a color gradient along this trajectory. Additionally, I would greatly appreciate guidance on how to color specific atoms, such as Cα atoms, based on their overall displacement. Ideally, the color intensity (hue) would increase in proportion to the magnitude of the displacement. Best regards, Pranav Best, Pranav -- Pranav Shah Postdoctoral Research Fellow. Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK

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Converting .stl to .mrc or .pdb
by mitchell.gulkis＠ufl.edu 17 Nov '25

17 Nov '25

Hello everyone, For instructional purposes, I am trying to generate simulated cryo-EM micrographs from a .stl file, in this case Mickey Mouse. This way, students can hold the 3D printed Mickey up to the micrograph to better understand projection images and angular assignment. I am able to open the .stl file in ChimeraX, but I can not figure out how to convert it to a format that is accepted by micrograph simulation programs, either .mrc or .pdb. Has anyone else figured out how to do this? Thanks! Sincerely, Mitch

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On the web Casino wars 101 The way to Take full advantage of The Payout
by pachat71＠teleworm.us 16 Nov '25

16 Nov '25

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PyPI Chimerax Package for Windows
by Berenice E Cowfer Chavez 14 Nov '25

14 Nov '25

Hello, Do you have a PyPI ChimeraX package for windows? I can online find a .whl file for macOS. Sincerely, Berenice E. Cowfer Chavez, M.S. Lab Manager, Profs. Johnson and Shoulders Labs Massachusetts Institute of Technology

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A fixed clipping plane?
by jon_choy＠g.harvard.edu 14 Nov '25

14 Nov '25

Hi all, Prior to this I was an avid IMOD user. There I was able to set a clipping plane and move/rotate the model such that the model clipping plan would NOT clip any other parts of the model. Essentially i want to create a clipping plane, set it and then transform the model such that no other parts of the model will be clipped. Is this possible? I could not figure it out for the life of me. It's pretty simple in IMOD, just not sure if it's possible in ChimeraX. Would love to hear what you guys think. -Jon

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